jgi.p|Nanoce1779_2|150910, mRNA_1090 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|150910
Unique Name	mRNA_1090
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1437
Alignment location	scaffold_2:1196685..1198329 +

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Properties


Property Name	Value
TranscriptId	150996
Track	FilteredModels2
ProteinId	150910

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1196685..1198329 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|150910	gene_1090	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|150910	mRNA_1090-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1090	CDS_1090	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1196685..1198329+
coding sequence from alignment at scaffold_2:1196685..1198329+

mRNA sequence

>mRNA_1090 ID=mRNA_1090|Name=jgi.p|Nanoce1779_2|150910|organism=Nannochloropsis oceanica|type=mRNA|length=1437bp
GCGAGGCGTTGTGAGTGTGGTTCTTGAAAGAGCGCATGGCAAAGGGATGG
CCTGGCCTGAGATGATGGCGCTCGCTCAAAAATCGTTGGCGAGGCCCGTC
CATGTCGATCGTCGTCCGTGCCGTCGGGACAACCAAATCCTGTGCACACA
TTCTAGAGAGCCAATGCTTTCATGGCCCTGTTGCCATCCCTTGCGAGCAT
ATACTCGGCCATGGCTTTAGGCTGGCAGAGTTACAAGGTTCTGGCTGAGG
AGAGCGTCGAAGAAGAGGAAGAGAACGACATGGACATAGACGCTAGGCCC
CCCTCCTATTCCCCCTGCTTCGCCCCCTCCCCTTCTGCCCTTAGTCCCGA
CTTGCTGGCGGCTTGGACGGTGCTGGGTGCTGTGCAGCTCTTCGAATGCA
CCCTGGAGTGGCTTGTGTCATGGCTGCCGTTCCACAATGTGGTCAAGGCA
GCGTTCCTCATCGCCCTTACGTTTCCCGAAACCCGCCTCCCGCACCTAGC
GCTCACACGCGTGGTAGCGCCCTACTCCGACGCTTTAAACGCTTTCTTTC
AGACACACCTTCTTCCTGAACTGGTGCAGCTGGTCTTGGCATTGCCGCAA
CATTTTTTGGACGCCGTATTTCCTATGTCCCATGACCATCCATCCTTTGC
CGGGCCCCCTTTTTTGGAAAGCCCTCGGCATCAACGACAGCAATATTATG
CCCGGCGTCGTCGATCTTCCCTCCTTTCCTTGTCAAAAGCAGGCGTAATC
ACATTCTCTCATGTGCAGGCTACCCCAACCCGTCGCTCTGCTTTTGAAAG
GATCCTAGACACCTCTCCACCACCATCGTCCCCTCCTCGCGTGGTACCCC
CGACGAACGTGACGCTTTATCCTCCCTCTACGCCCGCTTTACCTTCTGCG
TCCTGTGATATTTATCGATCATCGCCACGAGCATCACGGCAAAGGCCAGT
TTCACCGCCCAAGCCCAATTACCCCCACCAAAGGCAAAAAGTGATGCGGC
CGCACGAGCAACAGCAGCAGCAGCAGCAGCAGCCACAACAACAGCCATCG
CAACGGCAGCAGCAGCATCAAGATAAACCACGAAATCCCTCCCCACCCCC
CCCCTCCCAAGCCGCAGCACAAACGCCCTGTCTCACCACCCTTCCATCTC
TCCCCTCCTCTCCCATCATTGTCAAAAGTAGCAACATCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACAGCAACAG
CCAAACCTGAGCACTTTTCGTCGTCAAATAGATCCATCTCCATGCCTCGT
GCGGATTCAGGCGAGGAGAAAGTAAACAGCAGCAGCAGCAGTAGTAATAG
TAGTAGTAGTAGTAGTAGTAGCAGCAGCAGCAGGAGCAGCAGCAGCAGTG
GTAGTAGCAGTAGTGGCAGTAGTAGCAACAGTAGACG

protein sequence of jgi.p|Nanoce1779_2|150910

>mRNA_1090-protein ID=mRNA_1090-protein|Name=jgi.p|Nanoce1779_2|150910|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MALLPSLASIYSAMALGWQSYKVLAEESVEEEEENDMDIDARPPSYSPCF
APSPSALSPDLLAAWTVLGAVQLFECTLEWLVSWLPFHNVVKAAFLIALT
FPETRLPHLALTRVVAPYSDALNAFFQTHLLPELVQLVLALPQHFLDAVF
PMSHDHPSFAGPPFLESPRHQRQQYYARRRRSSLLSLSKAGVITFSHVQA
TPTRRSAFERILDTSPPPSSPPRVVPPTNVTLYPPSTPALPSASCDIYRS
SPRASRQRPVSPPKPNYPHQRQKVMRPHEQQQQQQQQPQQQPSQRQQQHQ
DKPRNPSPPPPSQAAAQTPCLTTLPSLPSSPIIVKSSNISSSSSSSSSSS
SSSNSSNSNSQT*

mRNA from alignment at scaffold_2:1196685..1198329+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1090 ID=mRNA_1090|Name=jgi.p|Nanoce1779_2|150910|organism=Nannochloropsis oceanica|type=mRNA|length=1645bp|location=Sequence derived from alignment at scaffold_2:1196685..1198329+ (Nannochloropsis oceanica)
GCGAGGCGTTGTGAGTGTGGTTCTTGAAAGAGCGCATGGCAAAGGGATGG
CCTGGCCTGAGATGATGGCGCTCGCTCAAAAATCGTTGGCGAGGCCCGTC
CATGTCGATCGTCGTCCGTGCCGTCGGGACAACCAAATCCTGTGCACACA
TTCTAGAGAGCCAATGTATGTGTGTGATTAAATTTGCATGCAGGGTTAAG
GTGTGAAGGTGAGAAGCAATCGCCTCGCCATTTTGATTTCGCTCCTAACA
AAACACATACCAAAACCCCCCTTACCACAGGCTTTCATGGCCCTGTTGCC
ATCCCTTGCGAGCATATACTCGGCCATGGCTTTAGGCTGGCAGAGTTACA
AGGTTCTGGCTGAGGAGAGCGTCGAAGAAGAGGAAGAGAACGACATGGAC
ATAGACGCTAGGCCCCCCTCCTATTCCCCCTGCTTCGCCCCCTCCCCTTC
TGCCCTTAGTCCCGACTTGCTGGCGGCTTGGACGGTGCTGGGTGCTGTGC
AGCTCTTCGAATGCACCCTGGAGTGGCTTGTGTCATGGCTGCCGTTCCAC
AATGTGGTCAAGGCAGCGTTCCTCATCGCCCTTACGTTTCCCGAAACCCG
CCTCCCGCACCTAGCGCTCACACGCGTGGTAGCGCCCTACTCCGACGCTT
TAAACGCTTTCTTTCAGACACACCTTCTTCCTGAACTGGTGCAGCTGGTC
TTGGCATTGCCGCAACATTTTTTGGACGCCGTATTTCCTATGTCCCATGA
CCATCCATCCTTTGCCGGGCCCCCTTTTTTGGAAAGCCCTCGGCATCAAC
GACAGCAATATTATGCCCGGCGTCGTCGATCTTCCCTCCTTTCCTTGTCA
AAAGCAGGCGTAATCACATTCTCTCATGTGCAGGCTACCCCAACCCGTCG
CTCTGCTTTTGAAAGGATCCTAGACACCTCTCCACCACCATCGTCCCCTC
CTCGCGTGGTACCCCCGACGAACGTGACGCTTTATCCTCCCTCTACGCCC
GCTTTACCTTCTGCGTCCTGTGATATTTATCGATCATCGCCACGAGCATC
ACGGCAAAGGCCAGTTTCACCGCCCAAGCCCAATTACCCCCACCAAAGGC
AAAAAGTGATGCGGCCGCACGAGCAACAGCAGCAGCAGCAGCAGCAGCCA
CAACAACAGCCATCGCAACGGCAGCAGCAGCATCAAGATAAACCACGAAA
TCCCTCCCCACCCCCCCCCTCCCAAGCCGCAGCACAAACGCCCTGTCTCA
CCACCCTTCCATCTCTCCCCTCCTCTCCCATCATTGTCAAAAGTAGCAAC
ATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAG
CAGCAACAGCAACAGCCAAACCTGAGCACTTTTCGTCGTCAAATGTTAGT
GTCCGACATCGTCACCTCTCTGGATTGACTGCGATTGCCTCCTCCCCTTC
ATCCCTTCCTCCCTCCTCGTCTTCCCCTTGTGGACAGAGATCCATCTCCA
TGCCTCGTGCGGATTCAGGCGAGGAGAAAGTAAACAGCAGCAGCAGCAGT
AGTAATAGTAGTAGTAGTAGTAGTAGTAGCAGCAGCAGCAGGAGCAGCAG
CAGCAGTGGTAGTAGCAGTAGTGGCAGTAGTAGCAACAGTAGACG

Coding sequence (CDS) from alignment at scaffold_2:1196685..1198329+

>mRNA_1090 ID=mRNA_1090|Name=jgi.p|Nanoce1779_2|150910|organism=Nannochloropsis oceanica|type=CDS|length=1089bp|location=Sequence derived from alignment at scaffold_2:1196685..1198329+ (Nannochloropsis oceanica)
ATGGCCCTGTTGCCATCCCTTGCGAGCATATACTCGGCCATGGCTTTAGG
CTGGCAGAGTTACAAGGTTCTGGCTGAGGAGAGCGTCGAAGAAGAGGAAG
AGAACGACATGGACATAGACGCTAGGCCCCCCTCCTATTCCCCCTGCTTC
GCCCCCTCCCCTTCTGCCCTTAGTCCCGACTTGCTGGCGGCTTGGACGGT
GCTGGGTGCTGTGCAGCTCTTCGAATGCACCCTGGAGTGGCTTGTGTCAT
GGCTGCCGTTCCACAATGTGGTCAAGGCAGCGTTCCTCATCGCCCTTACG
TTTCCCGAAACCCGCCTCCCGCACCTAGCGCTCACACGCGTGGTAGCGCC
CTACTCCGACGCTTTAAACGCTTTCTTTCAGACACACCTTCTTCCTGAAC
TGGTGCAGCTGGTCTTGGCATTGCCGCAACATTTTTTGGACGCCGTATTT
CCTATGTCCCATGACCATCCATCCTTTGCCGGGCCCCCTTTTTTGGAAAG
CCCTCGGCATCAACGACAGCAATATTATGCCCGGCGTCGTCGATCTTCCC
TCCTTTCCTTGTCAAAAGCAGGCGTAATCACATTCTCTCATGTGCAGGCT
ACCCCAACCCGTCGCTCTGCTTTTGAAAGGATCCTAGACACCTCTCCACC
ACCATCGTCCCCTCCTCGCGTGGTACCCCCGACGAACGTGACGCTTTATC
CTCCCTCTACGCCCGCTTTACCTTCTGCGTCCTGTGATATTTATCGATCA
TCGCCACGAGCATCACGGCAAAGGCCAGTTTCACCGCCCAAGCCCAATTA
CCCCCACCAAAGGCAAAAAGTGATGCGGCCGCACGAGCAACAGCAGCAGC
AGCAGCAGCAGCCACAACAACAGCCATCGCAACGGCAGCAGCAGCATCAA
GATAAACCACGAAATCCCTCCCCACCCCCCCCCTCCCAAGCCGCAGCACA
AACGCCCTGTCTCACCACCCTTCCATCTCTCCCCTCCTCTCCCATCATTG
TCAAAAGTAGCAACATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAACAGCAGCAACAGCAACAGCCAAACCTGA

Synonyms

Publications