jgi.p|Nanoce1779_2|576243, mRNA_109 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576243
Unique Name	mRNA_109
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1388
Alignment location	scaffold_3:290913..292627 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576329
Track	FilteredModels2
ProteinId	576243

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:290913..292627 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576243	gene_109	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576243	mRNA_109-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_109	CDS_109	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:290913..292627+
coding sequence from alignment at scaffold_3:290913..292627+

mRNA sequence

>mRNA_109 ID=mRNA_109|Name=jgi.p|Nanoce1779_2|576243|organism=Nannochloropsis oceanica|type=mRNA|length=1388bp
TGTTGAGAACCTTCAGTCGTCCCAATTTGAGCGACCATTCGAACAATTCA
ACCAAGGCCCCTGGCCAACCATCGCACCGCCACGAACTTTGTCCACGGGT
CCTAGTATGGTGAGTGTGGGACAAAGGTGAGTCGAACGGTCTGAGGGGCG
ACATAAAGTCAAACAACAAGGGTAGGAGAGCGTGGCATCTTGCTCGCTAA
AGCAATGTTGCCGTCAAAACATATTGAGGTCTATTTATTACCACGTACAT
GAGTCTAGAGAGCTGTATTTATGCAAAATGCATGCCATGCAACCACTGCT
TCGCTCCCGACGGCATGTCCTCCACCCACATTTCCCCCCACCCTTTTTAC
AAGGAGGCAGGAGGTCGACCAGCATTGGCCCCCGACCGCAGGAAGACGCC
ATGGCTCCCGCTACCACCACACCCGCAGACGCCAGCCTCCGCCGGCTCCT
CAATGCCATGGCCTACCCCGGCCTAGCTGCCTTTACACTGGATGACCCCA
CCGAAGTTCGCAAGGCCATCACCTGGGTGGAGGACCGCAAAATTCGCCTT
TATGACATTGACGAACGCGAACCCCTTCGCACATCCGGCCCGGGATGGAA
CGCAGCGTTTCGGAAGTATTTAGATGACGTGGAATGTCCTCATCTTGTGA
AGGGAGAGTGGGCTGCTGCCTCGGCGCAAGCAAAGGTACAGGTCCTGCAC
TGGCTTTTCGCGAAGGGCCTGGCTTGCGAATACGTGGATGAGGCAGAGAC
GTACAACCCAGCCGCCGCAGCAGCTGTGGCAGCAGCAGCAGCAGCATCTC
CAGCAGAGGAGGAGGAGGGCCTGCCGGCTGACTTTCACGAGCGAGTCCAC
ACCCTTGCCACGCGCCTCGGCATTCTCCCTTCCTCTTCCTCTTCCTCCCT
CTCCTCCTCTTCAACATCCCCTCCTTTCTCCTCCCTCCTCACTACCTTAC
AAACGATCCTTTCTGTCATTCAACTCCGTCTTTCTCCTGCTGCTTTCCAG
GCGACCAAAGAAGGGCAAGCCTCCGACCTTCAGCTTGACGACTTTCTTCT
CTCCTACTCCACTCAAGACCCGGTGGTGGACCGCGTTGCACGGGCAATGA
CCATGCTCTATGTCAACGATCTGAGAGAGCTACAAACGGATATAAACGAT
ATTCTCGTGTCGGCGCAGGAGTTTACCGCGAACCCGAAAACCAACACGGC
CTTAGGGAAAGTTGGGCGATAGAGGTAACGCTTCCTGCTTTGCTTTAAAA
GAAAGAATACAAAAATGGGAAAGAGGTGGGCGGTTGGACCAAGAAAGAGT
GGGTAGTTGACAAAACAATACAGCAACCACCACAGGGGGAAAATGGCCAC
TCACGAACAATGTATACACAGCACTTATGTGTGGAATT

protein sequence of jgi.p|Nanoce1779_2|576243

>mRNA_109-protein ID=mRNA_109-protein|Name=jgi.p|Nanoce1779_2|576243|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MHAMQPLLRSRRHVLHPHFPPPFLQGGRRSTSIGPRPQEDAMAPATTTPA
DASLRRLLNAMAYPGLAAFTLDDPTEVRKAITWVEDRKIRLYDIDEREPL
RTSGPGWNAAFRKYLDDVECPHLVKGEWAAASAQAKVQVLHWLFAKGLAC
EYVDEAETYNPAAAAAVAAAAAASPAEEEEGLPADFHERVHTLATRLGIL
PSSSSSSLSSSSTSPPFSSLLTTLQTILSVIQLRLSPAAFQATKEGQASD
LQLDDFLLSYSTQDPVVDRVARAMTMLYVNDLRELQTDINDILVSAQEFT
ANPKTNTALGKVGR*

mRNA from alignment at scaffold_3:290913..292627+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_109 ID=mRNA_109|Name=jgi.p|Nanoce1779_2|576243|organism=Nannochloropsis oceanica|type=mRNA|length=1715bp|location=Sequence derived from alignment at scaffold_3:290913..292627+ (Nannochloropsis oceanica)
TGTTGAGAACCTTCAGTCGTCCCAATTTGAGCGACCATTCGAACAATTCA
ACCAAGGCCCCTGGCCAACCATCGCACCGCCACGAACTTTGTCCACGGGT
CCTAGTATGGTGAGTGTGGGACAAAGGTGAGTCGAACGGTCTGAGGGGCG
ACATAAAGTCAAACAACAAGGGTAGGAGAGCGTGGCATCTTGCTCGCTAA
AGCAATGTTGCCGTCAAAACATATTGAGGTCTATTTATTACCACGTACAT
GAGTCTAGAGAGCTGTATTTATGCAAAATGCATGCCATGCAACCACTGCT
TCGCTCCCGACGGCATGTCCTCCACCCACATTTCCCCCCACCCTTTTTAC
AAGGAGGCAGGAGGTCGACCAGCATTGGCCCCCGACCGCAGGAAGACGCC
ATGGCTCCCGCTACCACCACACCCGCAGACGCCAGCCTCCGCCGGCTCCT
CAATGCCATGGCCTACCCCGGCCTAGCTGCCTTTACACTGGATGGTCCGT
GCATGTCGGAATGGTACCCTTTCTTCTCGGCCCTTCACGTCCTGGCGCAT
ATAACAAACCCCCCCTTATGCTTGTGAACATTTTGATGCTGTTTGTGATC
TCGAGACTCATGTTGTCCTCTGACTTCTCTGACTAAATCTTACAAAACAT
TCCAGTATGAAAAGCTCACCCCTAAACCAACTCCTCGCCTATCCAAACCC
CCCACCAGACCCCACCGAAGTTCGCAAGGCCATCACCTGGGTGGAGGACC
GCAAAATTCGCCTTTATGACATTGACGAACGCGAACCCCTTCGCACATCC
GGCCCGGGATGGAACGCAGCGTTTCGGAAGTATTTAGATGACGTGGAATG
TCCTCATCTTGTGAAGGGAGAGTGGGCTGCTGCCTCGGCGCAAGCAAAGG
TACAGGTCCTGCACTGGCTTTTCGCGAAGGGCCTGGCTTGCGAATACGTG
GATGAGGCAGAGACGTACAACCCAGCCGCCGCAGCAGCTGTGGCAGCAGC
AGCAGCAGCATCTCCAGCAGAGGAGGAGGAGGGCCTGCCGGCTGACTTTC
ACGAGCGAGTCCACACCCTTGCCACGCGCCTCGGCATTCTCCCTTCCTCT
TCCTCTTCCTCCCTCTCCTCCTCTTCAACATCCCCTCCTTTCTCCTCCCT
CCTCACTACCTTACAAACGATCCTTTCTGTCATTCAACTCCGTCTTTCTC
CTGCTGCTTTCCAGGCGACCAAAGAAGGGCAAGCCTCCGACCTTCAGCTT
GACGACTTTCTTCTCTCCTACTCCACTCAAGACCCGGTGGTGGACCGCGT
TGCACGGGCAATGACCATGCTCTATGTCAACGATCTGAGAGAGCTACAAA
CGGATATAAACGATATTCTCGTGTCGGCGCAGGAGTTTACCGCGAACCCG
TGCGTGGGAGGGAGGGAGGGACGGCAGGCTTCTGTGATCACATTTTTGCA
AATCGTTTTCTCATTAACTTTCTTCTTCTTTTCTCTCCCCTTTGCCTGAA
CCCCACCGACAGGAAAACCAACACGGCCTTAGGGAAAGTTGGGCGATAGA
GGTAACGCTTCCTGCTTTGCTTTAAAAGAAAGAATACAAAAATGGGAAAG
AGGTGGGCGGTTGGACCAAGAAAGAGTGGGTAGTTGACAAAACAATACAG
CAACCACCACAGGGGGAAAATGGCCACTCACGAACAATGTATACACAGCA
CTTATGTGTGGAATT

Coding sequence (CDS) from alignment at scaffold_3:290913..292627+

>mRNA_109 ID=mRNA_109|Name=jgi.p|Nanoce1779_2|576243|organism=Nannochloropsis oceanica|type=CDS|length=2835bp|location=Sequence derived from alignment at scaffold_3:290913..292627+ (Nannochloropsis oceanica)
ATGCATGCCATGCAACCACTGCTTCGCTCCCGACGGCATGTCCTCCACCC
ACATTTCCCCCCACCCTTTTTACAAGGAGGCAGGAGGTCGACCAGCATTG
GCCCCCGACCGCAGGAAGACGCCATGGCTCCCGCTACCACCACACCCGCA
GACGCCAGCCTCCGCCGGCTCCTCAATGCCATGGCCTACCCCGGCCTAGC
TGCCTTTACACTGGATGACCCCACCGAAGTTCGCAAGGCCATCACCTGGG
TGGAGGACCGCAAAATTCGCCTTTATGACATTGACGAACGCGAACCCCTT
CGCACATCCGGCCCGGGATGGAACGCAGCGTTTCGGAAGTATTTAGATGA
CGTGGAATGTCCTCATCTTGTGAAGGGAGAGTGGGCTGCTGCCTCGGCGC
AAGCAAAGGTACAGGTCCTGCACTGGCTTTTCGCGAAGGGCCTGGCTTGC
GAATACGTGGATGAGGCAGAGACGTACAACCCAGCCGCCGCAGCAGCTGT
GGCAGCAGCAGCAGCAGCATCTCCAGCAGAGGAGGAGGAGGGCCTGCCGG
CTGACTTTCACGAGCGAGTCCACACCCTTGCCACGCGCCTCGGCATTCTC
CCTTCCTCTTCCTCTTCCTCCCTCTCCTCCTCTTCAACATCCCCTCCTTT
CTCCTCCCTCCTCACTACCTTACAAACGATCCTTTCTGTCATTCAACTCC
GTCTTTCTCCTGCTGCTTTCCAGGCGACCAAAGAAGGGCAAGCCTCCGAC
CTTCAGCTTGACGACTTTCTTCTCTCCTACTCCACTCAAGACCCGGTGGT
GGACCGCGTTGCACGGGCAATGACCATGCTCTATGTCAACGATCTGAGAG
AGCTACAAACGGATATAAACGATATTCTCGTGTCGGCGCAGGAGTTTACC
GCGAACCCGAAAACCAACACGGCCTTAGGGAAAGTTGGGCGATAGATGCA
TGCCATGCAACCACTGCTTCGCTCCCGACGGCATGTCCTCCACCCACATT
TCCCCCCACCCTTTTTACAAGGAGGCAGGAGGTCGACCAGCATTGGCCCC
CGACCGCAGGAAGACGCCATGGCTCCCGCTACCACCACACCCGCAGACGC
CAGCCTCCGCCGGCTCCTCAATGCCATGGCCTACCCCGGCCTAGCTGCCT
TTACACTGGATGACCCCACCGAAGTTCGCAAGGCCATCACCTGGGTGGAG
GACCGCAAAATTCGCCTTTATGACATTGACGAACGCGAACCCCTTCGCAC
ATCCGGCCCGGGATGGAACGCAGCGTTTCGGAAGTATTTAGATGACGTGG
AATGTCCTCATCTTGTGAAGGGAGAGTGGGCTGCTGCCTCGGCGCAAGCA
AAGGTACAGGTCCTGCACTGGCTTTTCGCGAAGGGCCTGGCTTGCGAATA
CGTGGATGAGGCAGAGACGTACAACCCAGCCGCCGCAGCAGCTGTGGCAG
CAGCAGCAGCAGCATCTCCAGCAGAGGAGGAGGAGGGCCTGCCGGCTGAC
TTTCACGAGCGAGTCCACACCCTTGCCACGCGCCTCGGCATTCTCCCTTC
CTCTTCCTCTTCCTCCCTCTCCTCCTCTTCAACATCCCCTCCTTTCTCCT
CCCTCCTCACTACCTTACAAACGATCCTTTCTGTCATTCAACTCCGTCTT
TCTCCTGCTGCTTTCCAGGCGACCAAAGAAGGGCAAGCCTCCGACCTTCA
GCTTGACGACTTTCTTCTCTCCTACTCCACTCAAGACCCGGTGGTGGACC
GCGTTGCACGGGCAATGACCATGCTCTATGTCAACGATCTGAGAGAGCTA
CAAACGGATATAAACGATATTCTCGTGTCGGCGCAGGAGTTTACCGCGAA
CCCGAAAACCAACACGGCCTTAGGGAAAGTTGGGCGATAGATGCATGCCA
TGCAACCACTGCTTCGCTCCCGACGGCATGTCCTCCACCCACATTTCCCC
CCACCCTTTTTACAAGGAGGCAGGAGGTCGACCAGCATTGGCCCCCGACC
GCAGGAAGACGCCATGGCTCCCGCTACCACCACACCCGCAGACGCCAGCC
TCCGCCGGCTCCTCAATGCCATGGCCTACCCCGGCCTAGCTGCCTTTACA
CTGGATGACCCCACCGAAGTTCGCAAGGCCATCACCTGGGTGGAGGACCG
CAAAATTCGCCTTTATGACATTGACGAACGCGAACCCCTTCGCACATCCG
GCCCGGGATGGAACGCAGCGTTTCGGAAGTATTTAGATGACGTGGAATGT
CCTCATCTTGTGAAGGGAGAGTGGGCTGCTGCCTCGGCGCAAGCAAAGGT
ACAGGTCCTGCACTGGCTTTTCGCGAAGGGCCTGGCTTGCGAATACGTGG
ATGAGGCAGAGACGTACAACCCAGCCGCCGCAGCAGCTGTGGCAGCAGCA
GCAGCAGCATCTCCAGCAGAGGAGGAGGAGGGCCTGCCGGCTGACTTTCA
CGAGCGAGTCCACACCCTTGCCACGCGCCTCGGCATTCTCCCTTCCTCTT
CCTCTTCCTCCCTCTCCTCCTCTTCAACATCCCCTCCTTTCTCCTCCCTC
CTCACTACCTTACAAACGATCCTTTCTGTCATTCAACTCCGTCTTTCTCC
TGCTGCTTTCCAGGCGACCAAAGAAGGGCAAGCCTCCGACCTTCAGCTTG
ACGACTTTCTTCTCTCCTACTCCACTCAAGACCCGGTGGTGGACCGCGTT
GCACGGGCAATGACCATGCTCTATGTCAACGATCTGAGAGAGCTACAAAC
GGATATAAACGATATTCTCGTGTCGGCGCAGGAGTTTACCGCGAACCCGA
AAACCAACACGGCCTTAGGGAAAGTTGGGCGATAG

Synonyms

Publications