jgi.p|Nanoce1779_2|575276, mRNA_1088 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575276
Unique NamemRNA_1088
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length982
Alignment locationscaffold_2:1191940..1192921 -

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Properties
Property NameValue
TranscriptId575362
TrackFilteredModels2
ProteinId575276
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1191940..1192921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575276gene_1088Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575276mRNA_1088-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1088CDS_1088Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1088 ID=mRNA_1088|Name=jgi.p|Nanoce1779_2|575276|organism=Nannochloropsis oceanica|type=mRNA|length=982bp
CACCAGAAAGTGCACATCAAGGTGCAGCAGTTTGTTGCCCCTCGATGGAC
GAAACGAATAGAACATCCTTCGATTTGGCGCACGCATTTCATACGATACC
GCGCGGAAGGCCCGGGTCTGCCCTTCGTAAGTCATTCCCTTTGGCCACCA
CGGTGACGCATGTTTGAGACGCAGAGATGAGCAGTCTGCTCTTTTCGCAG
ACAGCAGGCGATCCCCGTTGATGGAATATCGAAGCTGCGTGAGTCAAGGT
CCCGCATCCCAACCAGCTCAGAGCTCGCTTTTCCAACACACAAAATAAGA
CTTTGGTTCGGAATCGGTTATGAATGGAAACTTGGCTTCGACAAGGTCTC
TCTCGAACCGCCCGCAGATTATTTGAGTCAGCTCCAGTGAGACGATGGAA
TTTCAACTGAAGTTTCCAACAACAAGCATTGATGCGTCGCTACTGTCGTT
GTAGTTCTGAGTCTTCTTTTACTCATGTCATGAGGAAGGCTTTATGCATA
GCACATATTGCCCTTGTTGTCGCCTGTGGCATTTACTTTGCCTCGTGGCT
CTCCCGCTGCAGACCCTTATGCGGGCCATCAGGGCTCAAATTGTTCTGTA
TGACTCAATCGGGCAGTGGGGGCGAAGAAGGACATGCGCCGCCGGGCCAT
CAAAGAGAGAGTTAGTGTGTACACATGCCACTTTCTGGACCGCGTGGTCT
TGCGCAGCAGTAACGCTCAACAACCGAGAGGCACGTGCCACGTCCTCTCA
GGTGCACGACATTTGCGTTACAGCCATCATATTTTCCCCCTGCGCCGGTC
GTGTGGTTCCAAATTCGACTCACGGGTGCTCGAAAAAGGAGGCGCTTCTT
TTTAGACTTTTGAGTCGTCTTATTCTACCAAACTCACGTGAATAAACATA
CACGGACAGGTCAACGGCAGGACTCCCATGACGCAGCCGGAGCAGCCCTG
GCAGCAGCTCTGAAAAGCCCCAAAGAGAGAAG
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protein sequence of jgi.p|Nanoce1779_2|575276

>mRNA_1088-protein ID=mRNA_1088-protein|Name=jgi.p|Nanoce1779_2|575276|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MHSTYCPCCRLWHLLCLVALPLQTLMRAIRAQIVLYDSIGQWGRRRTCAA
GPSKRELVCTHATFWTAWSCAAVTLNNREARATSSQVHDICVTAIIFSPC
AGRVVPNSTHGCSKKEALLFRLLSRLILPNSR
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mRNA from alignment at scaffold_2:1191940..1192921-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1088 ID=mRNA_1088|Name=jgi.p|Nanoce1779_2|575276|organism=Nannochloropsis oceanica|type=mRNA|length=982bp|location=Sequence derived from alignment at scaffold_2:1191940..1192921- (Nannochloropsis oceanica)
CACCAGAAAGTGCACATCAAGGTGCAGCAGTTTGTTGCCCCTCGATGGAC
GAAACGAATAGAACATCCTTCGATTTGGCGCACGCATTTCATACGATACC
GCGCGGAAGGCCCGGGTCTGCCCTTCGTAAGTCATTCCCTTTGGCCACCA
CGGTGACGCATGTTTGAGACGCAGAGATGAGCAGTCTGCTCTTTTCGCAG
ACAGCAGGCGATCCCCGTTGATGGAATATCGAAGCTGCGTGAGTCAAGGT
CCCGCATCCCAACCAGCTCAGAGCTCGCTTTTCCAACACACAAAATAAGA
CTTTGGTTCGGAATCGGTTATGAATGGAAACTTGGCTTCGACAAGGTCTC
TCTCGAACCGCCCGCAGATTATTTGAGTCAGCTCCAGTGAGACGATGGAA
TTTCAACTGAAGTTTCCAACAACAAGCATTGATGCGTCGCTACTGTCGTT
GTAGTTCTGAGTCTTCTTTTACTCATGTCATGAGGAAGGCTTTATGCATA
GCACATATTGCCCTTGTTGTCGCCTGTGGCATTTACTTTGCCTCGTGGCT
CTCCCGCTGCAGACCCTTATGCGGGCCATCAGGGCTCAAATTGTTCTGTA
TGACTCAATCGGGCAGTGGGGGCGAAGAAGGACATGCGCCGCCGGGCCAT
CAAAGAGAGAGTTAGTGTGTACACATGCCACTTTCTGGACCGCGTGGTCT
TGCGCAGCAGTAACGCTCAACAACCGAGAGGCACGTGCCACGTCCTCTCA
GGTGCACGACATTTGCGTTACAGCCATCATATTTTCCCCCTGCGCCGGTC
GTGTGGTTCCAAATTCGACTCACGGGTGCTCGAAAAAGGAGGCGCTTCTT
TTTAGACTTTTGAGTCGTCTTATTCTACCAAACTCACGTGAATAAACATA
CACGGACAGGTCAACGGCAGGACTCCCATGACGCAGCCGGAGCAGCCCTG
GCAGCAGCTCTGAAAAGCCCCAAAGAGAGAAG
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Coding sequence (CDS) from alignment at scaffold_2:1191940..1192921-

>mRNA_1088 ID=mRNA_1088|Name=jgi.p|Nanoce1779_2|575276|organism=Nannochloropsis oceanica|type=CDS|length=398bp|location=Sequence derived from alignment at scaffold_2:1191940..1192921- (Nannochloropsis oceanica)
ATGCATAGCACATATTGCCCTTGTTGTCGCCTGTGGCATTTACTTTGCCT
CGTGGCTCTCCCGCTGCAGACCCTTATGCGGGCCATCAGGGCTCAAATTG
TTCTGTATGACTCAATCGGGCAGTGGGGGCGAAGAAGGACATGCGCCGCC
GGGCCATCAAAGAGAGAGTTAGTGTGTACACATGCCACTTTCTGGACCGC
GTGGTCTTGCGCAGCAGTAACGCTCAACAACCGAGAGGCACGTGCCACGT
CCTCTCAGGTGCACGACATTTGCGTTACAGCCATCATATTTTCCCCCTGC
GCCGGTCGTGTGGTTCCAAATTCGACTCACGGGTGCTCGAAAAAGGAGGC
GCTTCTTTTTAGACTTTTGAGTCGTCTTATTCTACCAAACTCACGTGA
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Synonyms
Publications