jgi.p|Nanoce1779_2|575273, mRNA_1087 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575273
Unique Name	mRNA_1087
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2786
Alignment location	scaffold_2:1187937..1190722 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	575359
Track	FilteredModels2
ProteinId	575273

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1187937..1190722 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575273	gene_1087	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575273	mRNA_1087-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1087	CDS_1087	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1187937..1190722-
coding sequence from alignment at scaffold_2:1187937..1190722-

mRNA sequence

>mRNA_1087 ID=mRNA_1087|Name=jgi.p|Nanoce1779_2|575273|organism=Nannochloropsis oceanica|type=mRNA|length=2786bp
GCAGCAACAGCAGCAGCAGCAGCGATGCCGAGGGCGCTCTTCTTCCATTG
CCCCCTCCCCCTCTTCCTCCTCCTCAAGCCCACCCTCGACATCGCAACCC
CCCAGCCCGGAATTTACTTCTGTGCATGGATCCGTGGAAACAGCAGCGTC
TCGGTCAACAAATCATAGCTCTGTATCTCCCCGTTCCCCTACCACCGCGG
GACTCGGCTCGTTGTTTCCCCATCCTATCTGTTCTTCCTCCTCCCCCCGG
CACTTGGACAACAGCAGCCTAGCCGCTGCTTTCGAGGTCGGGCTGGGAAG
CAACCAGGGGGGACCACAGCAGCAGCAACAGCAACACCGTCACTTGTACC
ACGATTGCGACGATGTGATTGTCGGACAAAAGGGAGGAATGGAAGGAGAA
AGAGCCGATGTGACCAGCATTGCTAGTCCGCGGGAGGAGAAGATTATGGG
GGCCACAACGGAGAGAGTTGGAGATGAAAGTGGGATGAAAAAGGCGTCTG
AAGAAAAGGAGACATTGATAAGGACGAGCTGCGGCAGCAGAAGCAAGAAT
AGCTGCCAGACTATCGATATGCGCCACGGCTTCAACAAATTCAACTGCAA
TTCCACCGTCATTCCCGAGGCCACCGGGGCTGCTGCAAGCTCCATGCGTG
TCATGATCCCCTCGCCCTATAACCTCACTCTAGCCACTCTCACCCGCACC
AGCAGCGACGATCTCTGCATGCCTTCGCTTCGTCAGCGTTCTATCTCCTC
TACCTCCTCTTCCGCCGAAATGGAAGACCTTCCGCGCCAAATGGCTGAGT
ACGTCCTCCTCACACCCAAATCACCCGGGGTACCTCTCCACGCCCACCAC
GATTATGGCAACAGCAGCAGCAGTGGCGGCGGCGGCAGCAGCAGTCTCAG
CAGCAGCAGCCCTTTCCTTGCTCTCCTACCTCCTCACTTGCAGCATCCCC
ATCAAAAATGCGTAACGGCTCCTCCAGGGTTGGGGTATGGAGAAGAGATG
GAGTGGGCAGCGATGGATAGCAAGTTGAAGAGAATTCGGTCGTCGGAGAG
ACTGCTGCAATTGAAGGAGGAGGTGGAGGAAGCGATGCGGAAGAAGGCCA
CGCGCGCGCAGCAGCAGCAGCAGCAGATTGATGGGAAGGACGAAGAGGGA
GTGGAGAAAGTGGAGGAGAATGAGATTGAGGAAGAGGAGAAGGACGAGGA
GGGGAAGCAGCAACAGGAACTTCAAGTGGAGGTGGAGGTGGAGGATAAGG
AGGTTGATGCCATGGAGCACTATAAGTGCAACCGACTTTCTGTCATTGTC
TCGACTGTGGAGCAGAACGACGACTCGACCTCAAGCTGCAACCCGTCTTC
CACTTATTCCTCCCTCGGGTCATCTTCTTCTCTTTCCTTTAAGAGGGTGT
CCAGAGATGGGATAAGTCCTACTGCCCAGCAGCTCGACATGATGGCGGGT
GGTTTCGGCATGGCTACCTCTTCTGGTGGGTGCACGCAAAGCTGTCGGCG
GAGCTCTTTTGTCATCCACCAGCCGCAGTCCCAGTCGTTCAATTTGAAGC
ACCAGCACCAGCACCAGCAAGGAAAGGAACAGACATCTATGTATAGGTGG
CTACTTCCTATTTTGTAGTACTAGCAGATCAAGGATTGTGTGATCAATGG
TACTACTGTTCAGGCAATATGTGTGTGGTGTGAATGCTTTTGTGGGTAGG
AGGATGTGAGTGTAAACAGCTTTGCTCAGTGAAGCCCGTGTTTGTCTTGT
GTATGTTGTATGTTTTTATAATACCGGCCTCATGTTTGGCATTTGTTCGT
CATCTGTCTTTTGTCTTTCTGTAAGAGAAATTTATAGCGAAAGATTACGG
GAGGTAGAGAGGAAGGGGTTGCCACGTCGGTGTATTTTGCCTGTATTGCG
TGTGTTGTGTTTGCCTGTGTCTTAATACCTGTGTGTACAATCGTCTACCT
GTGTACCTGTGATGCATGTGATTTTTGAGAGCAGGCATATCGGCCAACAT
TCCGTTCAACTATATTTGCTAACGTTCATGCACACAAAGTCAAAACAAAT
TTCATCCCGTTCAATACAGCAGCATTAGCAGTATAGGCAGCAGCAGCAGC
GGGAAGAAATTATAGAGTACATTATTCTGTGTGGCTGTTTCCCCCGCCCC
TCGCGTTCGCCGCGCCCTTAAACGATGTGACGACCCCTTGTGTGCTTGTT
TTTATAGATTGATGAAAAAGGGAGGTCTGAGAGATGAAGTAAGGGCCGAA
CCAAGTGTAGGACGGGAATGAGGAATGGCGTGCACATATCATTCTTCGCA
AGTTTTGAATTCACGTAGAATAAAGCGGCTAATTATTATATGCAGTAAAC
AAATACAGTGATTTTGGTGGTTCAAACTTGTGGAAGCAGGAAGCACATAA
GAGTATAGGAAGACAAAGGGATGAAGTAATTATATAAGCAAACCGCGCTC
CCGCACAAAGAGAAGAATGAAGGGAAAATCCACCACTCGGAGATGCGCTG
GTCACTCAATCCGTCACCCGAAAGAGATGAAATGACACCTTCTTTTCGAA
GAGAAATGAAAGGAAACGTTAAGCTCGGAAAACAAATGATCTAGAGTCGT
ACGCACGATTGCAGCGACTAAGGTATGGCTGACAGCCACCATAAGCGATG
TAGACCGACCAACGAGAGCAAGACGCGCCAGTGAGGAAAGCGTGACTTTG
GCAGGAAATCCGGTGGATCGAAAGGCTAAGGTGGCTAAGGTCCATAAAAT
GAAAAGTTGCAGAAAGGAACGACGAAACGACCAGAA

protein sequence of jgi.p|Nanoce1779_2|575273

>mRNA_1087-protein ID=mRNA_1087-protein|Name=jgi.p|Nanoce1779_2|575273|organism=Nannochloropsis oceanica|type=polypeptide|length=410bp
MEGERADVTSIASPREEKIMGATTERVGDESGMKKASEEKETLIRTSCGS
RSKNSCQTIDMRHGFNKFNCNSTVIPEATGAAASSMRVMIPSPYNLTLAT
LTRTSSDDLCMPSLRQRSISSTSSSAEMEDLPRQMAEYVLLTPKSPGVPL
HAHHDYGNSSSSGGGGSSSLSSSSPFLALLPPHLQHPHQKCVTAPPGLGY
GEEMEWAAMDSKLKRIRSSERLLQLKEEVEEAMRKKATRAQQQQQQIDGK
DEEGVEKVEENEIEEEEKDEEGKQQQELQVEVEVEDKEVDAMEHYKCNRL
SVIVSTVEQNDDSTSSCNPSSTYSSLGSSSSLSFKRVSRDGISPTAQQLD
MMAGGFGMATSSGGCTQSCRRSSFVIHQPQSQSFNLKHQHQHQQGKEQTS
MYRWLLPIL*

mRNA from alignment at scaffold_2:1187937..1190722-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1087 ID=mRNA_1087|Name=jgi.p|Nanoce1779_2|575273|organism=Nannochloropsis oceanica|type=mRNA|length=2786bp|location=Sequence derived from alignment at scaffold_2:1187937..1190722- (Nannochloropsis oceanica)
GCAGCAACAGCAGCAGCAGCAGCGATGCCGAGGGCGCTCTTCTTCCATTG
CCCCCTCCCCCTCTTCCTCCTCCTCAAGCCCACCCTCGACATCGCAACCC
CCCAGCCCGGAATTTACTTCTGTGCATGGATCCGTGGAAACAGCAGCGTC
TCGGTCAACAAATCATAGCTCTGTATCTCCCCGTTCCCCTACCACCGCGG
GACTCGGCTCGTTGTTTCCCCATCCTATCTGTTCTTCCTCCTCCCCCCGG
CACTTGGACAACAGCAGCCTAGCCGCTGCTTTCGAGGTCGGGCTGGGAAG
CAACCAGGGGGGACCACAGCAGCAGCAACAGCAACACCGTCACTTGTACC
ACGATTGCGACGATGTGATTGTCGGACAAAAGGGAGGAATGGAAGGAGAA
AGAGCCGATGTGACCAGCATTGCTAGTCCGCGGGAGGAGAAGATTATGGG
GGCCACAACGGAGAGAGTTGGAGATGAAAGTGGGATGAAAAAGGCGTCTG
AAGAAAAGGAGACATTGATAAGGACGAGCTGCGGCAGCAGAAGCAAGAAT
AGCTGCCAGACTATCGATATGCGCCACGGCTTCAACAAATTCAACTGCAA
TTCCACCGTCATTCCCGAGGCCACCGGGGCTGCTGCAAGCTCCATGCGTG
TCATGATCCCCTCGCCCTATAACCTCACTCTAGCCACTCTCACCCGCACC
AGCAGCGACGATCTCTGCATGCCTTCGCTTCGTCAGCGTTCTATCTCCTC
TACCTCCTCTTCCGCCGAAATGGAAGACCTTCCGCGCCAAATGGCTGAGT
ACGTCCTCCTCACACCCAAATCACCCGGGGTACCTCTCCACGCCCACCAC
GATTATGGCAACAGCAGCAGCAGTGGCGGCGGCGGCAGCAGCAGTCTCAG
CAGCAGCAGCCCTTTCCTTGCTCTCCTACCTCCTCACTTGCAGCATCCCC
ATCAAAAATGCGTAACGGCTCCTCCAGGGTTGGGGTATGGAGAAGAGATG
GAGTGGGCAGCGATGGATAGCAAGTTGAAGAGAATTCGGTCGTCGGAGAG
ACTGCTGCAATTGAAGGAGGAGGTGGAGGAAGCGATGCGGAAGAAGGCCA
CGCGCGCGCAGCAGCAGCAGCAGCAGATTGATGGGAAGGACGAAGAGGGA
GTGGAGAAAGTGGAGGAGAATGAGATTGAGGAAGAGGAGAAGGACGAGGA
GGGGAAGCAGCAACAGGAACTTCAAGTGGAGGTGGAGGTGGAGGATAAGG
AGGTTGATGCCATGGAGCACTATAAGTGCAACCGACTTTCTGTCATTGTC
TCGACTGTGGAGCAGAACGACGACTCGACCTCAAGCTGCAACCCGTCTTC
CACTTATTCCTCCCTCGGGTCATCTTCTTCTCTTTCCTTTAAGAGGGTGT
CCAGAGATGGGATAAGTCCTACTGCCCAGCAGCTCGACATGATGGCGGGT
GGTTTCGGCATGGCTACCTCTTCTGGTGGGTGCACGCAAAGCTGTCGGCG
GAGCTCTTTTGTCATCCACCAGCCGCAGTCCCAGTCGTTCAATTTGAAGC
ACCAGCACCAGCACCAGCAAGGAAAGGAACAGACATCTATGTATAGGTGG
CTACTTCCTATTTTGTAGTACTAGCAGATCAAGGATTGTGTGATCAATGG
TACTACTGTTCAGGCAATATGTGTGTGGTGTGAATGCTTTTGTGGGTAGG
AGGATGTGAGTGTAAACAGCTTTGCTCAGTGAAGCCCGTGTTTGTCTTGT
GTATGTTGTATGTTTTTATAATACCGGCCTCATGTTTGGCATTTGTTCGT
CATCTGTCTTTTGTCTTTCTGTAAGAGAAATTTATAGCGAAAGATTACGG
GAGGTAGAGAGGAAGGGGTTGCCACGTCGGTGTATTTTGCCTGTATTGCG
TGTGTTGTGTTTGCCTGTGTCTTAATACCTGTGTGTACAATCGTCTACCT
GTGTACCTGTGATGCATGTGATTTTTGAGAGCAGGCATATCGGCCAACAT
TCCGTTCAACTATATTTGCTAACGTTCATGCACACAAAGTCAAAACAAAT
TTCATCCCGTTCAATACAGCAGCATTAGCAGTATAGGCAGCAGCAGCAGC
GGGAAGAAATTATAGAGTACATTATTCTGTGTGGCTGTTTCCCCCGCCCC
TCGCGTTCGCCGCGCCCTTAAACGATGTGACGACCCCTTGTGTGCTTGTT
TTTATAGATTGATGAAAAAGGGAGGTCTGAGAGATGAAGTAAGGGCCGAA
CCAAGTGTAGGACGGGAATGAGGAATGGCGTGCACATATCATTCTTCGCA
AGTTTTGAATTCACGTAGAATAAAGCGGCTAATTATTATATGCAGTAAAC
AAATACAGTGATTTTGGTGGTTCAAACTTGTGGAAGCAGGAAGCACATAA
GAGTATAGGAAGACAAAGGGATGAAGTAATTATATAAGCAAACCGCGCTC
CCGCACAAAGAGAAGAATGAAGGGAAAATCCACCACTCGGAGATGCGCTG
GTCACTCAATCCGTCACCCGAAAGAGATGAAATGACACCTTCTTTTCGAA
GAGAAATGAAAGGAAACGTTAAGCTCGGAAAACAAATGATCTAGAGTCGT
ACGCACGATTGCAGCGACTAAGGTATGGCTGACAGCCACCATAAGCGATG
TAGACCGACCAACGAGAGCAAGACGCGCCAGTGAGGAAAGCGTGACTTTG
GCAGGAAATCCGGTGGATCGAAAGGCTAAGGTGGCTAAGGTCCATAAAAT
GAAAAGTTGCAGAAAGGAACGACGAAACGACCAGAA

Coding sequence (CDS) from alignment at scaffold_2:1187937..1190722-

>mRNA_1087 ID=mRNA_1087|Name=jgi.p|Nanoce1779_2|575273|organism=Nannochloropsis oceanica|type=CDS|length=1230bp|location=Sequence derived from alignment at scaffold_2:1187937..1190722- (Nannochloropsis oceanica)
ATGGAAGGAGAAAGAGCCGATGTGACCAGCATTGCTAGTCCGCGGGAGGA
GAAGATTATGGGGGCCACAACGGAGAGAGTTGGAGATGAAAGTGGGATGA
AAAAGGCGTCTGAAGAAAAGGAGACATTGATAAGGACGAGCTGCGGCAGC
AGAAGCAAGAATAGCTGCCAGACTATCGATATGCGCCACGGCTTCAACAA
ATTCAACTGCAATTCCACCGTCATTCCCGAGGCCACCGGGGCTGCTGCAA
GCTCCATGCGTGTCATGATCCCCTCGCCCTATAACCTCACTCTAGCCACT
CTCACCCGCACCAGCAGCGACGATCTCTGCATGCCTTCGCTTCGTCAGCG
TTCTATCTCCTCTACCTCCTCTTCCGCCGAAATGGAAGACCTTCCGCGCC
AAATGGCTGAGTACGTCCTCCTCACACCCAAATCACCCGGGGTACCTCTC
CACGCCCACCACGATTATGGCAACAGCAGCAGCAGTGGCGGCGGCGGCAG
CAGCAGTCTCAGCAGCAGCAGCCCTTTCCTTGCTCTCCTACCTCCTCACT
TGCAGCATCCCCATCAAAAATGCGTAACGGCTCCTCCAGGGTTGGGGTAT
GGAGAAGAGATGGAGTGGGCAGCGATGGATAGCAAGTTGAAGAGAATTCG
GTCGTCGGAGAGACTGCTGCAATTGAAGGAGGAGGTGGAGGAAGCGATGC
GGAAGAAGGCCACGCGCGCGCAGCAGCAGCAGCAGCAGATTGATGGGAAG
GACGAAGAGGGAGTGGAGAAAGTGGAGGAGAATGAGATTGAGGAAGAGGA
GAAGGACGAGGAGGGGAAGCAGCAACAGGAACTTCAAGTGGAGGTGGAGG
TGGAGGATAAGGAGGTTGATGCCATGGAGCACTATAAGTGCAACCGACTT
TCTGTCATTGTCTCGACTGTGGAGCAGAACGACGACTCGACCTCAAGCTG
CAACCCGTCTTCCACTTATTCCTCCCTCGGGTCATCTTCTTCTCTTTCCT
TTAAGAGGGTGTCCAGAGATGGGATAAGTCCTACTGCCCAGCAGCTCGAC
ATGATGGCGGGTGGTTTCGGCATGGCTACCTCTTCTGGTGGGTGCACGCA
AAGCTGTCGGCGGAGCTCTTTTGTCATCCACCAGCCGCAGTCCCAGTCGT
TCAATTTGAAGCACCAGCACCAGCACCAGCAAGGAAAGGAACAGACATCT
ATGTATAGGTGGCTACTTCCTATTTTGTAG

Synonyms

Publications