jgi.p|Nanoce1779_2|150761, mRNA_1086 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|150761
Unique Name	mRNA_1086
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1477
Alignment location	scaffold_2:1183283..1185899 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	150847
Track	FilteredModels2
ProteinId	150761

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1183283..1185899 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|150761	gene_1086	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|150761	mRNA_1086-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1086	CDS_1086	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1183283..1185899+
coding sequence from alignment at scaffold_2:1183283..1185899+

mRNA sequence

>mRNA_1086 ID=mRNA_1086|Name=jgi.p|Nanoce1779_2|150761|organism=Nannochloropsis oceanica|type=mRNA|length=1477bp
CATTGAATGTCTTGGGACAGCAAGCCGAGGTCCGAGCCGTGTGGGCCCGT
GAGAAAAAACCGGCCGCCAGCGCTATCAGTGATGGAAAGGGGAACAGTGC
ATTAAAAAAGGGGGGGGAAAGGATAGAGGAGGATGGAGGTGACACAGGAG
GAGCAATTGAAGGAGGGGACGACATGGCGAGTCTCATAGCTGAGTTGGCG
GAAGCCTTGCGAACGTCTAAGGTGGTGCAACTTTCGGAGGATGGAACTGG
AGCCCGATCGCGTGTGGTGCGTAGCACCATAATTGCCCGGGAGATGCCAT
CGGATGTAACGGAGTCGGAAATTCGTGCTTTGTTTTCGAAGTGGGGGGAG
GCGGTGATTGACGTACGGTGTGAGCATGGCTTGTGGTACATAAGATTCTC
GGGAGAGGATGATGCCAGATCGGCGTGTCAGCAAATGAACAGCACTCCCT
TTCGAGGGCAGTCGTTAAGGTTAAGAATAAGATCAGAAGTCGGTCAGGCG
ATATACGGCTCTCTTGTCCAGCAGGTGTCTTCTCCAGGCTCGGGGAAGAA
GAAGAAGGGGGGGGGAAGCGGGCAGGGTCATCATCATCAGCAGCAGCAGC
TACCACAACCACAAGCACCTCCTCAACATCAACAGGTGCAGCAGCAACAA
GGACAATCAAAACCAGCTCCTCCTCAACCGAGCGGCAGCGGCGGCAAGCC
TGCGACGTCAACGACAGCACCAGCCCTCCCTCCTGGCAGCTCTGCTACCG
TGGGTCTTGATCTCGCCAGCAGCAGCAGCAGCAGCACCAATGGGAGGGCG
GCCAAAGCATCCGTCACGGAAGGAGGAGGAGGAGGATGCGAGGGAGGGGT
AAAGGGCGCAGCGTCTTCCGCTGTTAGTGCCAGTGGGGTGAGCGGCGAGG
CCGGCACCGCTGCACCGAAGAAGAGCAAAAACAAGAAGAAGTCCCAGCAG
CAACAGCAACAACAGCAGCAGGGTGGAGCACCTGTGCCTGCCCCTCAGCC
TCCTGTCGTGATCAGTCTAAGCCAGGACAATTTTCCTCCTCTTTCCAGCC
CTGGTGGTTCCTCCCTCCCTCTTTCAACTCTTATCGACGGCACAGGGGTA
GGCGGAGGAGAAACCACGGCGCAAAAGCTCGCTACTTTCCATGCCGCGTC
CTCCGCCGTGCTTTCTGCTCCGTCGTCCTCCTCTCATGTCTACAAGCCAG
CAGTATTAACGCCACCATCATCGTCAACCACAGTTTGGAAGGAGGGCGGG
AAGGAGGAGAGCGGGGGTGACAACAAGTGCTGCCGCAGGGGCTCCAGTGC
CGAATGAAACATCTGCTGCCGGGCCTTCAACTCAAGCTTCTTCTTCTGGA
AAATCACCAGCAGGATCGGCAGCAGGAGGAGCGGTCGGCAAGACCGAGGA
GGAGGGTGTCAAGACGACTGTAGCACCAGCACCAGAAAAAGCTACCTTCA
GTATTACTTCTCCCTCCACCTCCTCCA

protein sequence of jgi.p|Nanoce1779_2|150761

>mRNA_1086-protein ID=mRNA_1086-protein|Name=jgi.p|Nanoce1779_2|150761|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MASLIAELAEALRTSKVVQLSEDGTGARSRVVRSTIIAREMPSDVTESEI
RALFSKWGEAVIDVRCEHGLWYIRFSGEDDARSACQQMNSTPFRGQSLRL
RIRSEVGQAIYGSLVQQVSSPGSGKKKKGGGSGQGHHHQQQQLPQPQAPP
QHQQVQQQQGQSKPAPPQPSGSGGKPATSTTAPALPPGSSATVGLDLASS
SSSSTNGRAAKASVTEGGGGGCEGGVKGAASSAVSASGVSGEAGTAAPKK
SKNKKKSQQQQQQQQQGGAPVPAPQPPVVISLSQDNFPPLSSPGGSSLPL
STLIDGTGVGGGETTAQKLATFHAASSAVLSAPSSSSHVYKPAVLTPPSS
STTVWKEGGKEESGGDNKCCRRGSSAE*

mRNA from alignment at scaffold_2:1183283..1185899+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1086 ID=mRNA_1086|Name=jgi.p|Nanoce1779_2|150761|organism=Nannochloropsis oceanica|type=mRNA|length=2617bp|location=Sequence derived from alignment at scaffold_2:1183283..1185899+ (Nannochloropsis oceanica)
CATTGAATGTCTTGGGACAGCAAGCCGAGGTCCGAGCCGTGTGGGCCCGT
GAGAAAAAACCGGCCGCCAGCGCTATCAGTGATGGAAAGGGGAACAGTGC
ATTAAAAAAGGGGGGGGAAAGGATAGAGGAGGATGGAGGTGACACAGGAG
GAGCAATTGAAGGAGGGGACGACATGGCGAGTCTCATAGCTGAGTTGGCG
GAAGCCTTGCGAACGTCTAAGGTGGTGCAACTTTCGGAGGATGGAACTGG
AGCCCGATCGCGTGTGGTGCGTAGCACCATAATTGCCCGGGAGATGCCAT
CGGATGTAACGGAGTCGGAAATTCGTGCTTTGTTTTCGAAGTGGGGGGAG
GCGGTGATTGACGTACGGTGTGAGCATGGCTTGTGGTACATAAGATTCTC
GGGAGAGGATGATGCCAGATCGGCGTGTCAGCAAATGAACAGCACTCCCT
TTCGAGGGCAGTCGTTAAGGTTAAGAATAAGATCAGAAGTCGGTCAGGCG
ATATACGGCTCTCTTGTCCAGCAGGCCGGTGGTGGTGGAGGAGGAGGAGG
AGGGTTGGGGGGTGCGACGACGGTGATGCCGACGATTGGATTGGGAGGGA
GGGAGGGAGGGCACGGGATGGCGGGTGCGCCGTCGTCGCCGAGAATCTCG
GGGGGGATGATGATGCCGCCTGGAGGAAGGCAGACGGGGGGTGTGGGGGG
TTTGCCTCATCTAAGTCTGTTCCAATTACAGAGCGGGGGAGGGCATATGC
AGCAACAATCACCATCACAACACCAGCAGCAGGGTGGACATGCTCACCAT
GCGCATCATTTGGCGATGTCCATACCACCACAACAGATGCCGCATGGTGC
TTATATGATCTCTCCAGGTGGTACCGGTGTGCCCTTCATCATGGATGGCC
AGCATATTCTGGGACCCCTCCCCCCTGGAGTAGGAGGGGGAGGACGGGAG
GGAGGAAGGGGAGGCGGAGGCCGGGGCAGGGGCGGAGGAGGGTTGTATAT
TCCGAGGGGAGCGCCATATCTGAGTTTGGGAGGGCAAGGAGGAGGACCAT
TGCCTATGATGCATCCACCGCCGTCGCAGCAGCAGCAGCCGGGAGGGGTG
GGGCAGCAGTCGTCGCAAGGGCGGTATCACCCACAGCAGCAGCAGCAGCC
GGGTATCGTGAGACCCCGAGGAGCATCATCTCAGTTCTACGCGGGCGGGC
CGGTAATGATGCAAGGAGGGGGGGGACAAGGAGGAGGGGGCATGCCTATG
ATGCCATCACGGGGAGGGAAGGGAGGAGTGACAGGTGGGGGAGGAGGGGG
GACAACCTCTTTGCATGGGTATATGGGCTCGAGAGCAGTGTCACAGCCAG
GAACGCCGACAGCTGGAGGGGGAGGAGGGGGAGGAGGGGGAGGAATAAGA
GGATTTGAGCTGCAGCAACAGCAGCAGTACATCCACCCGCAGCAGCAGCA
ACAACAACAAACAAGGAGAAAACAGCAACAGCCTTTCCCGCAGGAGCAGC
AGCAGCAGCAGCAGAACGCCCAGCAGCAACAACACTACCAACACCAGCAC
CCCTTTCAGGGGGGGCGTCCGCAACAGCAGCAACAACAACAACTGCAGTA
CCATCACCTGCAGCTGCCGCAGCAGCACCAGCAGCATCAGCAACTATATA
CAGCCCAATCGCAGGTGTCTTCTCCAGGCTCGGGGAAGAAGAAGAAGGGG
GGGGGAAGCGGGCAGGGTCATCATCATCAGCAGCAGCAGCTACCACAACC
ACAAGCACCTCCTCAACATCAACAGGTGCAGCAGCAACAAGGACAATCAA
AACCAGCTCCTCCTCAACCGAGCGGCAGCGGCGGCAAGCCTGCGACGTCA
ACGACAGCACCAGCCCTCCCTCCTGGCAGCTCTGCTACCGTGGGTCTTGA
TCTCGCCAGCAGCAGCAGCAGCAGCACCAATGGGAGGGCGGCCAAAGCAT
CCGTCACGGAAGGAGGAGGAGGAGGATGCGAGGGAGGGGTAAAGGGCGCA
GCGTCTTCCGCTGTTAGTGCCAGTGGGGTGAGCGGCGAGGCCGGCACCGC
TGCACCGAAGAAGAGCAAAAACAAGAAGAAGTCCCAGCAGCAACAGCAAC
AACAGCAGCAGGGTGGAGCACCTGTGCCTGCCCCTCAGCCTCCTGTCGTG
ATCAGTCTAAGCCAGGACAATTTTCCTCCTCTTTCCAGCCCTGGTGGTTC
CTCCCTCCCTCTTTCAACTCTTATCGACGGCACAGGGGTAGGCGGAGGAG
AAACCACGGCGCAAAAGCTCGCTACTTTCCATGCCGCGTCCTCCGCCGTG
CTTTCTGCTCCGTCGTCCTCCTCTCATGTCTACAAGCCAGCAGTATTAAC
GCCACCATCATCGTCAACCACAGTTTGGAAGGAGGGCGGGAAGGAGGAGA
GCGGGGGTGACAACAAGTGCTGCCGCAGGGGCTCCAGTGCCGAATGAAAC
ATCTGCTGCCGGGCCTTCAACTCAAGCTTCTTCTTCTGGAAAATCACCAG
CAGGATCGGCAGCAGGAGGAGCGGTCGGCAAGACCGAGGAGGAGGGTGTC
AAGACGACTGTAGCACCAGCACCAGAAAAAGCTACCTTCAGTATTACTTC
TCCCTCCACCTCCTCCA

Coding sequence (CDS) from alignment at scaffold_2:1183283..1185899+

>mRNA_1086 ID=mRNA_1086|Name=jgi.p|Nanoce1779_2|150761|organism=Nannochloropsis oceanica|type=CDS|length=2268bp|location=Sequence derived from alignment at scaffold_2:1183283..1185899+ (Nannochloropsis oceanica)
ATGGCGAGTCTCATAGCTGAGTTGGCGGAAGCCTTGCGAACGTCTAAGGT
GGTGCAACTTTCGGAGGATGGAACTGGAGCCCGATCGCGTGTGGTGCGTA
GCACCATAATTGCCCGGGAGATGCCATCGGATGTAACGGAGTCGGAAATT
CGTGCTTTGTTTTCGAAGTGGGGGGAGGCGGTGATTGACGTACGGTGTGA
GCATGGCTTGTGGTACATAAGATTCTCGGGAGAGGATGATGCCAGATCGG
CGTGTCAGCAAATGAACAGCACTCCCTTTCGAGGGCAGTCGTTAAGGTTA
AGAATAAGATCAGAAGTCGGTCAGGCGATATACGGCTCTCTTGTCCAGCA
GGTGTCTTCTCCAGGCTCGGGGAAGAAGAAGAAGGGGGGGGGAAGCGGGC
AGGGTCATCATCATCAGCAGCAGCAGCTACCACAACCACAAGCACCTCCT
CAACATCAACAGGTGCAGCAGCAACAAGGACAATCAAAACCAGCTCCTCC
TCAACCGAGCGGCAGCGGCGGCAAGCCTGCGACGTCAACGACAGCACCAG
CCCTCCCTCCTGGCAGCTCTGCTACCGTGGGTCTTGATCTCGCCAGCAGC
AGCAGCAGCAGCACCAATGGGAGGGCGGCCAAAGCATCCGTCACGGAAGG
AGGAGGAGGAGGATGCGAGGGAGGGGTAAAGGGCGCAGCGTCTTCCGCTG
TTAGTGCCAGTGGGGTGAGCGGCGAGGCCGGCACCGCTGCACCGAAGAAG
AGCAAAAACAAGAAGAAGTCCCAGCAGCAACAGCAACAACAGCAGCAGGG
TGGAGCACCTGTGCCTGCCCCTCAGCCTCCTGTCGTGATCAGTCTAAGCC
AGGACAATTTTCCTCCTCTTTCCAGCCCTGGTGGTTCCTCCCTCCCTCTT
TCAACTCTTATCGACGGCACAGGGGTAGGCGGAGGAGAAACCACGGCGCA
AAAGCTCGCTACTTTCCATGCCGCGTCCTCCGCCGTGCTTTCTGCTCCGT
CGTCCTCCTCTCATGTCTACAAGCCAGCAGTATTAACGCCACCATCATCG
TCAACCACAGTTTGGAAGGAGGGCGGGAAGGAGGAGAGCGGGGGTGACAA
CAAGTGCTGCCGCAGGGGCTCCAGTGCCGAATGAATGGCGAGTCTCATAG
CTGAGTTGGCGGAAGCCTTGCGAACGTCTAAGGTGGTGCAACTTTCGGAG
GATGGAACTGGAGCCCGATCGCGTGTGGTGCGTAGCACCATAATTGCCCG
GGAGATGCCATCGGATGTAACGGAGTCGGAAATTCGTGCTTTGTTTTCGA
AGTGGGGGGAGGCGGTGATTGACGTACGGTGTGAGCATGGCTTGTGGTAC
ATAAGATTCTCGGGAGAGGATGATGCCAGATCGGCGTGTCAGCAAATGAA
CAGCACTCCCTTTCGAGGGCAGTCGTTAAGGTTAAGAATAAGATCAGAAG
TCGGTCAGGCGATATACGGCTCTCTTGTCCAGCAGGTGTCTTCTCCAGGC
TCGGGGAAGAAGAAGAAGGGGGGGGGAAGCGGGCAGGGTCATCATCATCA
GCAGCAGCAGCTACCACAACCACAAGCACCTCCTCAACATCAACAGGTGC
AGCAGCAACAAGGACAATCAAAACCAGCTCCTCCTCAACCGAGCGGCAGC
GGCGGCAAGCCTGCGACGTCAACGACAGCACCAGCCCTCCCTCCTGGCAG
CTCTGCTACCGTGGGTCTTGATCTCGCCAGCAGCAGCAGCAGCAGCACCA
ATGGGAGGGCGGCCAAAGCATCCGTCACGGAAGGAGGAGGAGGAGGATGC
GAGGGAGGGGTAAAGGGCGCAGCGTCTTCCGCTGTTAGTGCCAGTGGGGT
GAGCGGCGAGGCCGGCACCGCTGCACCGAAGAAGAGCAAAAACAAGAAGA
AGTCCCAGCAGCAACAGCAACAACAGCAGCAGGGTGGAGCACCTGTGCCT
GCCCCTCAGCCTCCTGTCGTGATCAGTCTAAGCCAGGACAATTTTCCTCC
TCTTTCCAGCCCTGGTGGTTCCTCCCTCCCTCTTTCAACTCTTATCGACG
GCACAGGGGTAGGCGGAGGAGAAACCACGGCGCAAAAGCTCGCTACTTTC
CATGCCGCGTCCTCCGCCGTGCTTTCTGCTCCGTCGTCCTCCTCTCATGT
CTACAAGCCAGCAGTATTAACGCCACCATCATCGTCAACCACAGTTTGGA
AGGAGGGCGGGAAGGAGGAGAGCGGGGGTGACAACAAGTGCTGCCGCAGG
GGCTCCAGTGCCGAATGA

Synonyms

Publications