jgi.p|Nanoce1779_2|575264, mRNA_1085 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575264
Unique Name	mRNA_1085
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2043
Alignment location	scaffold_2:1180727..1182769 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	575350
Track	FilteredModels2
ProteinId	575264

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1180727..1182769 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575264	gene_1085	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575264	mRNA_1085-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1085	CDS_1085	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1180727..1182769+
coding sequence from alignment at scaffold_2:1180727..1182769+

mRNA sequence

>mRNA_1085 ID=mRNA_1085|Name=jgi.p|Nanoce1779_2|575264|organism=Nannochloropsis oceanica|type=mRNA|length=2043bp
ACAAGAGCAATTAACGTCCAAACCCAAGAAATCACCGGTTAAAATCTCAT
ATGAGGGGCACCGTCACTAATAAATGTCCATAAAACTTCATGCATACCAT
TAACACAACGACAAGGAACCAGGCAAGCCTCAAGGCCACACACGTCCGCG
CTACGCAAAGGGCACGGACCCCTCATCTGGCGTGGCCGTCTACAGGAGCA
GCAGTACACGGTCTCTGAAACACCGGCGATTTAAGCATCCCGTGCGCGCA
TCGTGCCTTTTGCGGTTCCATCTACCGCCATTGTCTCCGGAGTCTCACCC
CATCACGGTCATCGTCATCACCATGTCGCACAAACGCTACAGTCCTGCCC
TCCCTACCCTCCTACCCTGTCTACTCCTCCTCGTGCAGCTTTTGCTCGTT
CCATTTGCTGACGCATTTAATGTGCCAACACCTTCCCCTCTCCTTAATTC
CTCTGCGCACCAACGAATCCTCGTTATTGGTGCCACGGGTCGCGTTGGCG
GGTCCACCGTCCGCGCCCTACGAAAGCTCCCTGGTTTGGGCACGAGCAGT
CTCATTAGTGTGGGCGGACGGAGCAGCACCAAGTTTGAACAAGCCAAACA
ACGATGGATCAGCCTCGGGGAAAAAAAATATAAGAAGGACACATACGAAG
ATGTGGGCTTTGTGGCTCTGGACCACGAGGACCGAGTAGGGTTACTCGCA
GCCCTGGCCAATCATCGGCCCGACCTCATCATCCATACAGCTGGGCCATT
CCAACGACGCCAAACTCCTGAAGTCCTCAAAGCAGCTCTTTTGCTCAAAG
TGCCTTATGTAGATGTCTGCGACGATATCAATCTGTCGCAACTCGCCAAA
GGCTATGACGGCCAAGCACGGGCAGCAGGTGTACCCTGCCTTATTTCCAC
TGGAGTCTGGCCAGGCGTGTCAAGCTTGATGGCGCTCGATGTGGCAGAAG
CCTTGGGCGGAGCGACGCAGACAAATAAGATCGATTTTGACTTCTTTACC
GCTGGTAGCGGTGGGGCGGGGACGACTATCTTAAGCGCGACGTTTCTGAT
TCTCTCGGAACAGGTCCTGGCGTACATTAATGGCCGGCCGCATTACTTTG
ACGCGGCTTCTGACTTCCGCAAGGTGGACTTTGGGGAGGGCGTGGGGGAT
CGGAACGTGTTTCGGATGAATCTTCTAGAGGCATACACGTGTCATCGTGT
CCTGGGGATACCGAACGTGGCGACGTTTTTTGGCACCGCGCCGGATGGGT
GGAATTACTTGTTGAAAGGTATGGCGACTCTTCCGAAGAAGGTTCTGCAA
GATCGGGCGGGGATGCAGGCCTTGGCGGTGATCAGCGAGCCGCTGGTCAG
ACTTGTTGACAAGCTAGTGGGGTCAACAAATGCCATGCTCGTGACAGGGG
TGAGCAAGGATGGAAAACGTACTGCATCTGCGTTGTACGCGCACGAAGAT
TTGGAAACTTGTGTGGGAGAGGGAATCGCCGCCTTTGCAGCACAAGTTCT
AGAGAAGAAGGTAGCACCAGGCGTGCACTATCCAGAAGAGGCGTTTTCGT
CGCCGGAAGGTAGAGAGGACGTCTTTCGGTTGGCCACGAAGGGGTGTTTT
GCCTGGCGACGGCCGCCGGGGGTGGGGTTGCGGGTGGGAGAATAACGAGG
ACAGCAAATGCATAAGCATGACTCCATATTTAATGAAATTCAAATTGTGT
GTGGTAATTTTGCTTAGTTGTTTTCATGAGAGTGTACTGCATGGGGCAGT
GATGGGGACCAGGGGAGGGGGAGAAGAGCTAGAATATATTTATGGTGCTC
GCGCCTTTTTTTCCTTGCTTGGAAGCCCCACGCACCTTTGTGTCTTCGAC
GGCCTGCATGAGTCCTTCTGTACTCATTCTGCACGAGCCATCACCTTCGT
CTGCGCGGGCCACACCCTTCTTTTCCCACCTGCATTTTGGCCGCGGCCAG
GTGGGCGTGACTGTGCCGCGTGTTGATTCGTGCAACGAAGGAGACCCAAG
GACTCATTCGCTCCTCCTGTCCTCACCCCACCTCAGGCCTAAG

protein sequence of jgi.p|Nanoce1779_2|575264

>mRNA_1085-protein ID=mRNA_1085-protein|Name=jgi.p|Nanoce1779_2|575264|organism=Nannochloropsis oceanica|type=polypeptide|length=441bp
MSHKRYSPALPTLLPCLLLLVQLLLVPFADAFNVPTPSPLLNSSAHQRIL
VIGATGRVGGSTVRALRKLPGLGTSSLISVGGRSSTKFEQAKQRWISLGE
KKYKKDTYEDVGFVALDHEDRVGLLAALANHRPDLIIHTAGPFQRRQTPE
VLKAALLLKVPYVDVCDDINLSQLAKGYDGQARAAGVPCLISTGVWPGVS
SLMALDVAEALGGATQTNKIDFDFFTAGSGGAGTTILSATFLILSEQVLA
YINGRPHYFDAASDFRKVDFGEGVGDRNVFRMNLLEAYTCHRVLGIPNVA
TFFGTAPDGWNYLLKGMATLPKKVLQDRAGMQALAVISEPLVRLVDKLVG
STNAMLVTGVSKDGKRTASALYAHEDLETCVGEGIAAFAAQVLEKKVAPG
VHYPEEAFSSPEGREDVFRLATKGCFAWRRPPGVGLRVGE*

mRNA from alignment at scaffold_2:1180727..1182769+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1085 ID=mRNA_1085|Name=jgi.p|Nanoce1779_2|575264|organism=Nannochloropsis oceanica|type=mRNA|length=2043bp|location=Sequence derived from alignment at scaffold_2:1180727..1182769+ (Nannochloropsis oceanica)
ACAAGAGCAATTAACGTCCAAACCCAAGAAATCACCGGTTAAAATCTCAT
ATGAGGGGCACCGTCACTAATAAATGTCCATAAAACTTCATGCATACCAT
TAACACAACGACAAGGAACCAGGCAAGCCTCAAGGCCACACACGTCCGCG
CTACGCAAAGGGCACGGACCCCTCATCTGGCGTGGCCGTCTACAGGAGCA
GCAGTACACGGTCTCTGAAACACCGGCGATTTAAGCATCCCGTGCGCGCA
TCGTGCCTTTTGCGGTTCCATCTACCGCCATTGTCTCCGGAGTCTCACCC
CATCACGGTCATCGTCATCACCATGTCGCACAAACGCTACAGTCCTGCCC
TCCCTACCCTCCTACCCTGTCTACTCCTCCTCGTGCAGCTTTTGCTCGTT
CCATTTGCTGACGCATTTAATGTGCCAACACCTTCCCCTCTCCTTAATTC
CTCTGCGCACCAACGAATCCTCGTTATTGGTGCCACGGGTCGCGTTGGCG
GGTCCACCGTCCGCGCCCTACGAAAGCTCCCTGGTTTGGGCACGAGCAGT
CTCATTAGTGTGGGCGGACGGAGCAGCACCAAGTTTGAACAAGCCAAACA
ACGATGGATCAGCCTCGGGGAAAAAAAATATAAGAAGGACACATACGAAG
ATGTGGGCTTTGTGGCTCTGGACCACGAGGACCGAGTAGGGTTACTCGCA
GCCCTGGCCAATCATCGGCCCGACCTCATCATCCATACAGCTGGGCCATT
CCAACGACGCCAAACTCCTGAAGTCCTCAAAGCAGCTCTTTTGCTCAAAG
TGCCTTATGTAGATGTCTGCGACGATATCAATCTGTCGCAACTCGCCAAA
GGCTATGACGGCCAAGCACGGGCAGCAGGTGTACCCTGCCTTATTTCCAC
TGGAGTCTGGCCAGGCGTGTCAAGCTTGATGGCGCTCGATGTGGCAGAAG
CCTTGGGCGGAGCGACGCAGACAAATAAGATCGATTTTGACTTCTTTACC
GCTGGTAGCGGTGGGGCGGGGACGACTATCTTAAGCGCGACGTTTCTGAT
TCTCTCGGAACAGGTCCTGGCGTACATTAATGGCCGGCCGCATTACTTTG
ACGCGGCTTCTGACTTCCGCAAGGTGGACTTTGGGGAGGGCGTGGGGGAT
CGGAACGTGTTTCGGATGAATCTTCTAGAGGCATACACGTGTCATCGTGT
CCTGGGGATACCGAACGTGGCGACGTTTTTTGGCACCGCGCCGGATGGGT
GGAATTACTTGTTGAAAGGTATGGCGACTCTTCCGAAGAAGGTTCTGCAA
GATCGGGCGGGGATGCAGGCCTTGGCGGTGATCAGCGAGCCGCTGGTCAG
ACTTGTTGACAAGCTAGTGGGGTCAACAAATGCCATGCTCGTGACAGGGG
TGAGCAAGGATGGAAAACGTACTGCATCTGCGTTGTACGCGCACGAAGAT
TTGGAAACTTGTGTGGGAGAGGGAATCGCCGCCTTTGCAGCACAAGTTCT
AGAGAAGAAGGTAGCACCAGGCGTGCACTATCCAGAAGAGGCGTTTTCGT
CGCCGGAAGGTAGAGAGGACGTCTTTCGGTTGGCCACGAAGGGGTGTTTT
GCCTGGCGACGGCCGCCGGGGGTGGGGTTGCGGGTGGGAGAATAACGAGG
ACAGCAAATGCATAAGCATGACTCCATATTTAATGAAATTCAAATTGTGT
GTGGTAATTTTGCTTAGTTGTTTTCATGAGAGTGTACTGCATGGGGCAGT
GATGGGGACCAGGGGAGGGGGAGAAGAGCTAGAATATATTTATGGTGCTC
GCGCCTTTTTTTCCTTGCTTGGAAGCCCCACGCACCTTTGTGTCTTCGAC
GGCCTGCATGAGTCCTTCTGTACTCATTCTGCACGAGCCATCACCTTCGT
CTGCGCGGGCCACACCCTTCTTTTCCCACCTGCATTTTGGCCGCGGCCAG
GTGGGCGTGACTGTGCCGCGTGTTGATTCGTGCAACGAAGGAGACCCAAG
GACTCATTCGCTCCTCCTGTCCTCACCCCACCTCAGGCCTAAG

Coding sequence (CDS) from alignment at scaffold_2:1180727..1182769+

>mRNA_1085 ID=mRNA_1085|Name=jgi.p|Nanoce1779_2|575264|organism=Nannochloropsis oceanica|type=CDS|length=1323bp|location=Sequence derived from alignment at scaffold_2:1180727..1182769+ (Nannochloropsis oceanica)
ATGTCGCACAAACGCTACAGTCCTGCCCTCCCTACCCTCCTACCCTGTCT
ACTCCTCCTCGTGCAGCTTTTGCTCGTTCCATTTGCTGACGCATTTAATG
TGCCAACACCTTCCCCTCTCCTTAATTCCTCTGCGCACCAACGAATCCTC
GTTATTGGTGCCACGGGTCGCGTTGGCGGGTCCACCGTCCGCGCCCTACG
AAAGCTCCCTGGTTTGGGCACGAGCAGTCTCATTAGTGTGGGCGGACGGA
GCAGCACCAAGTTTGAACAAGCCAAACAACGATGGATCAGCCTCGGGGAA
AAAAAATATAAGAAGGACACATACGAAGATGTGGGCTTTGTGGCTCTGGA
CCACGAGGACCGAGTAGGGTTACTCGCAGCCCTGGCCAATCATCGGCCCG
ACCTCATCATCCATACAGCTGGGCCATTCCAACGACGCCAAACTCCTGAA
GTCCTCAAAGCAGCTCTTTTGCTCAAAGTGCCTTATGTAGATGTCTGCGA
CGATATCAATCTGTCGCAACTCGCCAAAGGCTATGACGGCCAAGCACGGG
CAGCAGGTGTACCCTGCCTTATTTCCACTGGAGTCTGGCCAGGCGTGTCA
AGCTTGATGGCGCTCGATGTGGCAGAAGCCTTGGGCGGAGCGACGCAGAC
AAATAAGATCGATTTTGACTTCTTTACCGCTGGTAGCGGTGGGGCGGGGA
CGACTATCTTAAGCGCGACGTTTCTGATTCTCTCGGAACAGGTCCTGGCG
TACATTAATGGCCGGCCGCATTACTTTGACGCGGCTTCTGACTTCCGCAA
GGTGGACTTTGGGGAGGGCGTGGGGGATCGGAACGTGTTTCGGATGAATC
TTCTAGAGGCATACACGTGTCATCGTGTCCTGGGGATACCGAACGTGGCG
ACGTTTTTTGGCACCGCGCCGGATGGGTGGAATTACTTGTTGAAAGGTAT
GGCGACTCTTCCGAAGAAGGTTCTGCAAGATCGGGCGGGGATGCAGGCCT
TGGCGGTGATCAGCGAGCCGCTGGTCAGACTTGTTGACAAGCTAGTGGGG
TCAACAAATGCCATGCTCGTGACAGGGGTGAGCAAGGATGGAAAACGTAC
TGCATCTGCGTTGTACGCGCACGAAGATTTGGAAACTTGTGTGGGAGAGG
GAATCGCCGCCTTTGCAGCACAAGTTCTAGAGAAGAAGGTAGCACCAGGC
GTGCACTATCCAGAAGAGGCGTTTTCGTCGCCGGAAGGTAGAGAGGACGT
CTTTCGGTTGGCCACGAAGGGGTGTTTTGCCTGGCGACGGCCGCCGGGGG
TGGGGTTGCGGGTGGGAGAATAA

Synonyms

Publications