jgi.p|Nanoce1779_2|575262, mRNA_1084 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575262
Unique NamemRNA_1084
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1240
Alignment locationscaffold_2:1179398..1180637 -

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Properties
Property NameValue
TranscriptId575348
TrackFilteredModels2
ProteinId575262
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1179398..1180637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575262gene_1084Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575262mRNA_1084-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1084CDS_1084Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1084 ID=mRNA_1084|Name=jgi.p|Nanoce1779_2|575262|organism=Nannochloropsis oceanica|type=mRNA|length=1240bp
ACAGCTCCGCCAGCACCATGCGGAGGTCTGGGAAGGCCATGACCTTCAGC
AGCACCATATTCAGTGCTTTTCGGCTCCCCATCACGGTCAGCAGACGGGT
TTTTTCCTCCTCCCAGCCCTCCCCCACCACCCCAGCCACCTCATCACCCC
CCAACACCAAACACGACTCTTTGCTTGCCTATGCCTTGGACCGCGTCCGA
CAAGGCGGCACGCCACACGGGGCCAACTTGGTGGCCTACTCTGGCGGAGT
GGACTCCAGCCTTGTGGCCGCCTTGGTCAAACGGGCGTTCCCCACCAATT
CCTTAGCCTGCATTGGCCTATCAGCGTCCTTGCCCAGCGCACAACTAAGC
CTGGCACGAGAAATAGCTGCTTACATTGACATTCCTTTGAAAGAGGTCAC
CACCGCTGAAGGTGACACACCCGGGTACGTGGCAAACCGGGGACTGAGCT
GCTTTCATTGCAAGACGCATTTGTACACGGCCTTGCAAGCCGTCGCAGCT
GAGGCGCAGAACTACCGCGAGGAAGTGCATCACGCCAAAACAAATATAAG
TTTAGCAACTGAAACAGGAGCTAACGCACAGGGGGGGGGAAATAAGCCTT
CATTCGTCGTCACGCTCTTTAATGGCACGAACGCCGATGATAGACAAGAT
CCGACGCGGGTTGGCTTAAAGGCAGCGCGGAATTTTAGGGTGCGAAGCCC
GATAGACCACTTGAACAAAAATGAGGTTCGGAAATTAGCACAAGCTCTCG
GTCTTCCAAATTGGCAGCATGCGGCTAGCCCTTGCCTGCGGTCGCGGTTG
GCGTTGGGCGTGCCGGCAGTAGAGGAGCACTTGCGAAAAGTGGAGGCGGC
TGAGGAGTTGGTGCGGGCGACGCTAGGACAAGGAGGAAGAGAAGGAGGGG
CAGCAGGATTGTTAGGCGTGCATCATAATGTCCGTGTGCGGCTTTTATCG
GAGGGGAAGGCAGTGATTGAAGTTGATGCGGAGCTATTGGAGTCGGCAGC
CTCGTTTTTCCTCGCGATGGAAGGGAGAATGAAAGCTGAATTGGGTTTCG
CGGACGTAACTCTCCGTGCGTTCAAAAGTGGGAGTGTAAATGGCTTGGGC
GGGACGACGAGGATAAGAAACAAGGGTCATGGAGGAGAAGAGGTCGAACA
GGTGAGTGCTTCATTTGCGTCGAGCAGTTGTCACCGGAATTGCGCAGAGA
AATGACAAGTAACGAAGAAAGAAATCAAACTGCAACCATA
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protein sequence of jgi.p|Nanoce1779_2|575262

>mRNA_1084-protein ID=mRNA_1084-protein|Name=jgi.p|Nanoce1779_2|575262|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MRRSGKAMTFSSTIFSAFRLPITVSRRVFSSSQPSPTTPATSSPPNTKHD
SLLAYALDRVRQGGTPHGANLVAYSGGVDSSLVAALVKRAFPTNSLACIG
LSASLPSAQLSLAREIAAYIDIPLKEVTTAEGDTPGYVANRGLSCFHCKT
HLYTALQAVAAEAQNYREEVHHAKTNISLATETGANAQGGGNKPSFVVTL
FNGTNADDRQDPTRVGLKAARNFRVRSPIDHLNKNEVRKLAQALGLPNWQ
HAASPCLRSRLALGVPAVEEHLRKVEAAEELVRATLGQGGREGGAAGLLG
VHHNVRVRLLSEGKAVIEVDAELLESAASFFLAMEGRMKAELGFADVTLR
AFKSGSVNGLGGTTRIRNKGHGGEEVEQVSASFASSSCHRNCAEK*
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mRNA from alignment at scaffold_2:1179398..1180637-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1084 ID=mRNA_1084|Name=jgi.p|Nanoce1779_2|575262|organism=Nannochloropsis oceanica|type=mRNA|length=1240bp|location=Sequence derived from alignment at scaffold_2:1179398..1180637- (Nannochloropsis oceanica)
ACAGCTCCGCCAGCACCATGCGGAGGTCTGGGAAGGCCATGACCTTCAGC
AGCACCATATTCAGTGCTTTTCGGCTCCCCATCACGGTCAGCAGACGGGT
TTTTTCCTCCTCCCAGCCCTCCCCCACCACCCCAGCCACCTCATCACCCC
CCAACACCAAACACGACTCTTTGCTTGCCTATGCCTTGGACCGCGTCCGA
CAAGGCGGCACGCCACACGGGGCCAACTTGGTGGCCTACTCTGGCGGAGT
GGACTCCAGCCTTGTGGCCGCCTTGGTCAAACGGGCGTTCCCCACCAATT
CCTTAGCCTGCATTGGCCTATCAGCGTCCTTGCCCAGCGCACAACTAAGC
CTGGCACGAGAAATAGCTGCTTACATTGACATTCCTTTGAAAGAGGTCAC
CACCGCTGAAGGTGACACACCCGGGTACGTGGCAAACCGGGGACTGAGCT
GCTTTCATTGCAAGACGCATTTGTACACGGCCTTGCAAGCCGTCGCAGCT
GAGGCGCAGAACTACCGCGAGGAAGTGCATCACGCCAAAACAAATATAAG
TTTAGCAACTGAAACAGGAGCTAACGCACAGGGGGGGGGAAATAAGCCTT
CATTCGTCGTCACGCTCTTTAATGGCACGAACGCCGATGATAGACAAGAT
CCGACGCGGGTTGGCTTAAAGGCAGCGCGGAATTTTAGGGTGCGAAGCCC
GATAGACCACTTGAACAAAAATGAGGTTCGGAAATTAGCACAAGCTCTCG
GTCTTCCAAATTGGCAGCATGCGGCTAGCCCTTGCCTGCGGTCGCGGTTG
GCGTTGGGCGTGCCGGCAGTAGAGGAGCACTTGCGAAAAGTGGAGGCGGC
TGAGGAGTTGGTGCGGGCGACGCTAGGACAAGGAGGAAGAGAAGGAGGGG
CAGCAGGATTGTTAGGCGTGCATCATAATGTCCGTGTGCGGCTTTTATCG
GAGGGGAAGGCAGTGATTGAAGTTGATGCGGAGCTATTGGAGTCGGCAGC
CTCGTTTTTCCTCGCGATGGAAGGGAGAATGAAAGCTGAATTGGGTTTCG
CGGACGTAACTCTCCGTGCGTTCAAAAGTGGGAGTGTAAATGGCTTGGGC
GGGACGACGAGGATAAGAAACAAGGGTCATGGAGGAGAAGAGGTCGAACA
GGTGAGTGCTTCATTTGCGTCGAGCAGTTGTCACCGGAATTGCGCAGAGA
AATGACAAGTAACGAAGAAAGAAATCAAACTGCAACCATA
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Coding sequence (CDS) from alignment at scaffold_2:1179398..1180637-

>mRNA_1084 ID=mRNA_1084|Name=jgi.p|Nanoce1779_2|575262|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at scaffold_2:1179398..1180637- (Nannochloropsis oceanica)
ATGCGGAGGTCTGGGAAGGCCATGACCTTCAGCAGCACCATATTCAGTGC
TTTTCGGCTCCCCATCACGGTCAGCAGACGGGTTTTTTCCTCCTCCCAGC
CCTCCCCCACCACCCCAGCCACCTCATCACCCCCCAACACCAAACACGAC
TCTTTGCTTGCCTATGCCTTGGACCGCGTCCGACAAGGCGGCACGCCACA
CGGGGCCAACTTGGTGGCCTACTCTGGCGGAGTGGACTCCAGCCTTGTGG
CCGCCTTGGTCAAACGGGCGTTCCCCACCAATTCCTTAGCCTGCATTGGC
CTATCAGCGTCCTTGCCCAGCGCACAACTAAGCCTGGCACGAGAAATAGC
TGCTTACATTGACATTCCTTTGAAAGAGGTCACCACCGCTGAAGGTGACA
CACCCGGGTACGTGGCAAACCGGGGACTGAGCTGCTTTCATTGCAAGACG
CATTTGTACACGGCCTTGCAAGCCGTCGCAGCTGAGGCGCAGAACTACCG
CGAGGAAGTGCATCACGCCAAAACAAATATAAGTTTAGCAACTGAAACAG
GAGCTAACGCACAGGGGGGGGGAAATAAGCCTTCATTCGTCGTCACGCTC
TTTAATGGCACGAACGCCGATGATAGACAAGATCCGACGCGGGTTGGCTT
AAAGGCAGCGCGGAATTTTAGGGTGCGAAGCCCGATAGACCACTTGAACA
AAAATGAGGTTCGGAAATTAGCACAAGCTCTCGGTCTTCCAAATTGGCAG
CATGCGGCTAGCCCTTGCCTGCGGTCGCGGTTGGCGTTGGGCGTGCCGGC
AGTAGAGGAGCACTTGCGAAAAGTGGAGGCGGCTGAGGAGTTGGTGCGGG
CGACGCTAGGACAAGGAGGAAGAGAAGGAGGGGCAGCAGGATTGTTAGGC
GTGCATCATAATGTCCGTGTGCGGCTTTTATCGGAGGGGAAGGCAGTGAT
TGAAGTTGATGCGGAGCTATTGGAGTCGGCAGCCTCGTTTTTCCTCGCGA
TGGAAGGGAGAATGAAAGCTGAATTGGGTTTCGCGGACGTAACTCTCCGT
GCGTTCAAAAGTGGGAGTGTAAATGGCTTGGGCGGGACGACGAGGATAAG
AAACAAGGGTCATGGAGGAGAAGAGGTCGAACAGGTGAGTGCTTCATTTG
CGTCGAGCAGTTGTCACCGGAATTGCGCAGAGAAATGA
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Synonyms
Publications