jgi.p|Nanoce1779_2|575259, mRNA_1083 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575259
Unique NamemRNA_1083
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1000
Alignment locationscaffold_2:1177229..1178638 -

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Properties
Property NameValue
TranscriptId575345
TrackFilteredModels2
ProteinId575259
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1177229..1178638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575259gene_1083Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575259mRNA_1083-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1083CDS_1083Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1083 ID=mRNA_1083|Name=jgi.p|Nanoce1779_2|575259|organism=Nannochloropsis oceanica|type=mRNA|length=1000bp
AGACAGTAGCCAGCTATGGTGCACGTCATCTCCAAGGACCATTCGCGTTT
GGTCAAATGCCTCTATCGGCAGCTGCTTAGGGACGCCCGCAGGGTTAAGC
ATTCGCGGGCGCCTTTCCTCTTCCTGCAGGAGCGCCCAAGTAGGGAAAGG
TATTCGCACTTGTGGGAAGTGACGCCCGACCACGATGCCAGGCTCCTAGA
CGCATTCCTGCCATCATACCTCCGGCACGAGCTAACAACATGCGAACTCA
AGTCACATGAGATGGAACGCATCGTCAAGGCCAATTTCCGTCGCTTCCGC
AACCTGGGCGTCGCCGGGGCCTCTGCCTCTAACAGTGGCGGCAGCGGTAG
CAGCAGAGAGTTCGCAACACTTTCACCTTCCAATACCAGTAGCAGTAGTA
GTAGTAGTGGCAGCAGCAGGCGGGGCAGCAGGAACCGGAGCGGGGGCGCT
TCTTCGGCGGCTTCTGCTTCTCCGCCTCCGACGCTGGACGAAGTCATAGA
TGATTGCATGACTTTGACGCGCCTCATGTCCGAGCAATTACGTTTGTTCG
AATGCACGAGCGTCACGGACTCCTTTGGAGTGCGTGTCATTGCTACGGCC
ACCGCCGCCGTCGATGAGCAGCAGCGGCAGGAGCAGCAGCAACAACATCA
TCAAAGCTCTTCTTCCACCCCGCAATCCCCTCCCCACTTCTTCTTCTATA
ACATCCGCGTCGAGAATAGAAATCGGAAGGCGACGGTGCAGCTAGTGGGG
AGACATTGGGTTATTCAGGATAATGAGGGAAAGGAGAGTGACTCGGTGCC
CAAGGGAAGCATTGGGGTTGTGGGTCACGAGCCCGTCTTGCGACCAGGGC
AAACGATAGTGTATATGAGCGGTGCCAAGCTGCCCACCCCATACGGCAGC
ATGCAGGGCTCCTTTCAAATGGTCAAGAAGATGGGGGAAGGCAACAGTGT
ACCTGACAAGTTTGACGCACGGGTCAGCCCGTTTGTTCTCAAGTAGAGGG
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protein sequence of jgi.p|Nanoce1779_2|575259

>mRNA_1083-protein ID=mRNA_1083-protein|Name=jgi.p|Nanoce1779_2|575259|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MVHVISKDHSRLVKCLYRQLLRDARRVKHSRAPFLFLQERPSRERYSHLW
EVTPDHDARLLDAFLPSYLRHELTTCELKSHEMERIVKANFRRFRNLGVA
GASASNSGGSGSSREFATLSPSNTSSSSSSSGSSRRGSRNRSGGASSAAS
ASPPPTLDEVIDDCMTLTRLMSEQLRLFECTSVTDSFGVRVIATATAAVD
EQQRQEQQQQHHQSSSSTPQSPPHFFFYNIRVENRNRKATVQLVGRHWVI
QDNEGKESDSVPKGSIGVVGHEPVLRPGQTIVYMSGAKLPTPYGSMQGSF
QMVKKMGEGNSVPDKFDARVSPFVLK*
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mRNA from alignment at scaffold_2:1177229..1178638-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1083 ID=mRNA_1083|Name=jgi.p|Nanoce1779_2|575259|organism=Nannochloropsis oceanica|type=mRNA|length=1410bp|location=Sequence derived from alignment at scaffold_2:1177229..1178638- (Nannochloropsis oceanica)
AGACAGTAGCCAGCTATGGTGCACGTCATCTCCAAGGACCATTCGCGTTT
GGTCAAATGCCTCTATCGGCAGCTGCTTAGGGACGCCCGCAGGGTTAAGC
ATTCGCGGGCGCCTTTCCTCTTCCTGCAGGAGCGCCCAAGTAGGGAAAGG
TATTCGCACTTGTGGGAAGTGACGCCCGACCACGATGCCAGGCTCCTAGA
CGCATTCCTGCCATCATACCTCCGGCACGAGCTAACAACATGCGAACTCA
AGTCACATGTAAGGAAGAGGTTCAAGGACAGGGGGCTCACATTCCTTTTC
TGCCTCAAAGATGACCATAAAAATTTGAGACCCAACAACATATTTGCAGT
GAGACGTCCACTATCACGGGTTGGAAGAACATCTCTACGACCCTCTGGAA
TCCCTTATCTGAGACTTCTTCATTCGTTTCCCGCTCTTATCAAAACAACG
ACCTCACAGGAGATGGAACGCATCGTCAAGGCCAATTTCCGTCGCTTCCG
CAACCTGGGCGTCGCCGGGGCCTCTGCCTCTAACAGTGGCGGCAGCGGTA
GCAGCAGAGAGTTCGCAACACTTTCACCTTCCAATACCAGTAGCAGTAGT
AGTAGTAGTGGCAGCAGCAGGCGGGGCAGCAGGAACCGGAGCGGGGGCGC
TTCTTCGGCGGCTTCTGCTTCTCCGCCTCCGACGCTGGACGAAGTCATAG
ATGATTGCATGACTTTGACGCGCCTCATGTCCGAGCAATTACGTTTGTTC
GAATGCACGAGCGTCACGGACTCCTTTGGAGTGCGTGTCATTGCTACGGC
CACCGCCGCCGTCGATGAGCAGCAGCGGCAGGAGCAGCAGCAACAACATC
ATCAAAGCTCTTCTTCCACCCCGCAATCCCCTCCCCACTTCTTCTTCTAT
AACATCCGCGTCGAGAATAGAAATCGGAAGGCGACGGTGCAGCTAGTGGG
GAGACATTGGGTTATTCAGGATAATGAGGGAAAGGAGAGTGACTCGGTGC
CCAAGGGAAGCATTGGTATGTTAGACTTAATGCCTGATGTGATCACCCAT
GTATACCTCAGACTTCCGTTGAATGTCTGAAATGTTTGTCGTACACATAA
AATGAAGGCCTGTGATATGGGCAGAACGCGGAAAGCTTTATCACTTTGAC
TTCACAAGTCTTTTCGCTTTTTATGGTCCTAACTTATGCACGTCCCCCGT
CCATCCTCCCTTCTTCACACGCAGGGGTTGTGGGTCACGAGCCCGTCTTG
CGACCAGGGCAAACGATAGTGTATATGAGCGGTGCCAAGCTGCCCACCCC
ATACGGCAGCATGCAGGGCTCCTTTCAAATGGTCAAGAAGATGGGGGAAG
GCAACAGTGTACCTGACAAGTTTGACGCACGGGTCAGCCCGTTTGTTCTC
AAGTAGAGGG
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Coding sequence (CDS) from alignment at scaffold_2:1177229..1178638-

>mRNA_1083 ID=mRNA_1083|Name=jgi.p|Nanoce1779_2|575259|organism=Nannochloropsis oceanica|type=CDS|length=2943bp|location=Sequence derived from alignment at scaffold_2:1177229..1178638- (Nannochloropsis oceanica)
GGGTTGTGGGTCACGAGCCCGTCTTGCGACCAGGGCAAACGATAGTGTAT
ATGAGCGGTGCCAAGCTGCCCACCCCATACGGCAGCATGCAGGGCTCCTT
TCAAATGGTCAAGAAGATGGGGGAAGGCAACAGTGTACCTGACAAGTTTG
ACGCACGGGTCAGCCCGTTTGTTCTCAAGTAGGAGATGGAACGCATCGTC
AAGGCCAATTTCCGTCGCTTCCGCAACCTGGGCGTCGCCGGGGCCTCTGC
CTCTAACAGTGGCGGCAGCGGTAGCAGCAGAGAGTTCGCAACACTTTCAC
CTTCCAATACCAGTAGCAGTAGTAGTAGTAGTGGCAGCAGCAGGCGGGGC
AGCAGGAACCGGAGCGGGGGCGCTTCTTCGGCGGCTTCTGCTTCTCCGCC
TCCGACGCTGGACGAAGTCATAGATGATTGCATGACTTTGACGCGCCTCA
TGTCCGAGCAATTACGTTTGTTCGAATGCACGAGCGTCACGGACTCCTTT
GGAGTGCGTGTCATTGCTACGGCCACCGCCGCCGTCGATGAGCAGCAGCG
GCAGGAGCAGCAGCAACAACATCATCAAAGCTCTTCTTCCACCCCGCAAT
CCCCTCCCCACTTCTTCTTCTATAACATCCGCGTCGAGAATAGAAATCGG
AAGGCGACGGTGCAGCTAGTGGGGAGACATTGGGTTATTCAGGATAATGA
GGGAAAGGAGAGTGACTCGGTGCCCAAGGGAAGCATTGATGGTGCACGTC
ATCTCCAAGGACCATTCGCGTTTGGTCAAATGCCTCTATCGGCAGCTGCT
TAGGGACGCCCGCAGGGTTAAGCATTCGCGGGCGCCTTTCCTCTTCCTGC
AGGAGCGCCCAAGTAGGGAAAGGTATTCGCACTTGTGGGAAGTGACGCCC
GACCACGATGCCAGGCTCCTAGACGCATTCCTGCCATCATACCTCCGGCA
CGAGCTAACAACATGCGAACTCAAGTCACATGGGTTGTGGGTCACGAGCC
CGTCTTGCGACCAGGGCAAACGATAGTGTATATGAGCGGTGCCAAGCTGC
CCACCCCATACGGCAGCATGCAGGGCTCCTTTCAAATGGTCAAGAAGATG
GGGGAAGGCAACAGTGTACCTGACAAGTTTGACGCACGGGTCAGCCCGTT
TGTTCTCAAGTAGGAGATGGAACGCATCGTCAAGGCCAATTTCCGTCGCT
TCCGCAACCTGGGCGTCGCCGGGGCCTCTGCCTCTAACAGTGGCGGCAGC
GGTAGCAGCAGAGAGTTCGCAACACTTTCACCTTCCAATACCAGTAGCAG
TAGTAGTAGTAGTGGCAGCAGCAGGCGGGGCAGCAGGAACCGGAGCGGGG
GCGCTTCTTCGGCGGCTTCTGCTTCTCCGCCTCCGACGCTGGACGAAGTC
ATAGATGATTGCATGACTTTGACGCGCCTCATGTCCGAGCAATTACGTTT
GTTCGAATGCACGAGCGTCACGGACTCCTTTGGAGTGCGTGTCATTGCTA
CGGCCACCGCCGCCGTCGATGAGCAGCAGCGGCAGGAGCAGCAGCAACAA
CATCATCAAAGCTCTTCTTCCACCCCGCAATCCCCTCCCCACTTCTTCTT
CTATAACATCCGCGTCGAGAATAGAAATCGGAAGGCGACGGTGCAGCTAG
TGGGGAGACATTGGGTTATTCAGGATAATGAGGGAAAGGAGAGTGACTCG
GTGCCCAAGGGAAGCATTGATGGTGCACGTCATCTCCAAGGACCATTCGC
GTTTGGTCAAATGCCTCTATCGGCAGCTGCTTAGGGACGCCCGCAGGGTT
AAGCATTCGCGGGCGCCTTTCCTCTTCCTGCAGGAGCGCCCAAGTAGGGA
AAGGTATTCGCACTTGTGGGAAGTGACGCCCGACCACGATGCCAGGCTCC
TAGACGCATTCCTGCCATCATACCTCCGGCACGAGCTAACAACATGCGAA
CTCAAGTCACATGGGTTGTGGGTCACGAGCCCGTCTTGCGACCAGGGCAA
ACGATAGTGTATATGAGCGGTGCCAAGCTGCCCACCCCATACGGCAGCAT
GCAGGGCTCCTTTCAAATGGTCAAGAAGATGGGGGAAGGCAACAGTGTAC
CTGACAAGTTTGACGCACGGGTCAGCCCGTTTGTTCTCAAGTAGGAGATG
GAACGCATCGTCAAGGCCAATTTCCGTCGCTTCCGCAACCTGGGCGTCGC
CGGGGCCTCTGCCTCTAACAGTGGCGGCAGCGGTAGCAGCAGAGAGTTCG
CAACACTTTCACCTTCCAATACCAGTAGCAGTAGTAGTAGTAGTGGCAGC
AGCAGGCGGGGCAGCAGGAACCGGAGCGGGGGCGCTTCTTCGGCGGCTTC
TGCTTCTCCGCCTCCGACGCTGGACGAAGTCATAGATGATTGCATGACTT
TGACGCGCCTCATGTCCGAGCAATTACGTTTGTTCGAATGCACGAGCGTC
ACGGACTCCTTTGGAGTGCGTGTCATTGCTACGGCCACCGCCGCCGTCGA
TGAGCAGCAGCGGCAGGAGCAGCAGCAACAACATCATCAAAGCTCTTCTT
CCACCCCGCAATCCCCTCCCCACTTCTTCTTCTATAACATCCGCGTCGAG
AATAGAAATCGGAAGGCGACGGTGCAGCTAGTGGGGAGACATTGGGTTAT
TCAGGATAATGAGGGAAAGGAGAGTGACTCGGTGCCCAAGGGAAGCATTG
ATGGTGCACGTCATCTCCAAGGACCATTCGCGTTTGGTCAAATGCCTCTA
TCGGCAGCTGCTTAGGGACGCCCGCAGGGTTAAGCATTCGCGGGCGCCTT
TCCTCTTCCTGCAGGAGCGCCCAAGTAGGGAAAGGTATTCGCACTTGTGG
GAAGTGACGCCCGACCACGATGCCAGGCTCCTAGACGCATTCCTGCCATC
ATACCTCCGGCACGAGCTAACAACATGCGAACTCAAGTCACAT
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Synonyms
Publications