jgi.p|Nanoce1779_2|634319, mRNA_10824 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|634319
Unique Name	mRNA_10824
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2037
Alignment location	scaffold_69:65391..67891 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	634405
Track	FilteredModels2
ProteinId	634319

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_69	supercontig	scaffold_69:65391..67891 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|634319	gene_10824	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|634319	mRNA_10824-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10824	CDS_10824	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_69:65391..67891-
coding sequence from alignment at scaffold_69:65391..67891-

mRNA sequence

>mRNA_10824 ID=mRNA_10824|Name=jgi.p|Nanoce1779_2|634319|organism=Nannochloropsis oceanica|type=mRNA|length=2037bp
GTATTCATGGGCGAACGGCATCTTCAGGAGAACCTCGGTGATGAGATCAA
GGCCCTTCGTCCGCCAGCCATAAACATCATGCATCTGGGGAAGCAGACTT
TGTCGCTGGTAGCATTGTCCATCATTTTTGTAAGCATCAGTCTGTTAGCT
AGACATGATGTGTTGACAGCGAACAATTTGCAGGAACCCTTCCACGGGGG
TTCCTTTCCTTTTTGTCCTTATTACGAAGACATCCCCAGCCCCTTCCCGG
CTTCGTTTTGGTACGTTAAGAACCACAAGACTGCTAGCAGCTCCTTATCA
GGTGTATTCCGCAGCATAGGTGCTCATCACGGAGTTGCCATCCTCTCATT
CAACCGAAGGAAAGAAACTCTCGCCATGTTGAAGCAGTCCCTCAATAGGA
CTTATGAAACGAATGAACACGCCGGCCTGACCGATCATTTACCATATTCG
CGGCAGGCGGCCGCTTTATTCAAACGACCTTTTTACCTTTTCTCCTCTGT
GCGGGAGCCTGTGTCGCAATTTCATTCAGGTTTTGTCGAAAAGTGTCTTT
TTCAGGCAAACAATGCTGCAGAGGAGCAGGGGATAATTAATACCACGTTA
ATTGCGGAGATGAGAGAGCGACTAGAAGACAGTTGTTTTGCAGGCAACTT
TGCGAATCGGACAACAAGGGCAAAGAGTATGCAAGAGAATAAACAATTAA
AGTATCTGGGTGATTCGGGTGAGGAAAAGGAGAAGCTGACGGTTGAATCT
GTCGCTTCCGCTTACGACTTCCTCTTCGTGAAGGAGAGACTGCATGAATC
ACTGGTAGCCTTCGCTATCCTTTTCAATGTTGATTTCGATGACATTGCCC
ACGTTGCATCGAAAGTACGGACAGGAAAATATACAGATGCTAGTCAGATC
CCCGCCGAAATAAACGAGCTTGTTCGCAGCAAGACAGCGAAAGATCTGGC
ACTGTGGGAACATGCCAATAAGCTCTTGGATGAGCACATCGTCAAAATCA
ATAAAAACTGCGGTGGAGAGGGTTACTTCAGAGAAATTCTAGAAAAATTT
GGCCAAATTGAAGAAGCGGTTTCAAACATCTGTGCAGAGGGATATAAAGA
ATGGTATGAAGAATTTGGATTCAATACCACGCTGTCCTACCGGAGGGACA
ATGGACAAGCACCCCGGTGCAGGGATCATGTGGTCAAGAATGTACTTCGA
AAGTGGGAGAAAGAGGGGGATGGGGTAGCGGTGGGTGGGATGATAGTGGA
AGACAAGGAATCGGAGGCGAAGAAAAATAATAAAGTGAGTGAGCACGATG
GCATGGGAAAGCAGAATGGAGAAAGAATTAGATAGAAAACAAGATTTGTA
ATCTAATTCGTTCTAATACTAAGCTAAATATATAGAGCATCAAGCTCTCC
ACACGCACTTGAAATTTTTATCAATTCTCAATCACTCATTGCATCCTTTA
CAATCTCTCCATTGCCATACGGGAGGCGGTGGATCTAAGTGGGGATCCCA
CTTAGTCTGCACGTAATCTAAAAGCTTTTCACCTATGTCGATCTCCGTCA
CATTCACAGCTGCAATTTTCACATATATATGCTCCCTTTTACTCCATGAA
AAGGAGAGGACAGGAGGGAAGGGATGAGGGGGGAGCACGCCAAATATTTG
AACTTTAACCAGACGAAGAAGATACCACAACACACCTCGCTATGTGAGGA
CTCCTGGGAGGGGCAGGGATAGAGAGGAAGAAGCCTTCTTCTTTACAGAT
GCAATAAGCCGCCTTCTCCCTCGAAAGTAGGAACGAGGAAGGCGCGGGCA
GCAGCACATGTCTCATCATTTTTCCTTCAACCAAAATAAAAAAGAAAGAC
CAATAATAATCAAATGGGCAGCAAGAAGCGCCAAATTTGCGAATGCAAGA
GGCATAAGTGGTATGTAGAGGACCTTATAGAGATGGTGCGCCAATCTAGG
GGAATAGAGGCAGACCAGACGACGTCGAGGAAGAAGAAGAACAAGAAGCC
TTGGCAACGGCGAATGTCATGATGATGATTATAGAGC

protein sequence of jgi.p|Nanoce1779_2|634319

>mRNA_10824-protein ID=mRNA_10824-protein|Name=jgi.p|Nanoce1779_2|634319|organism=Nannochloropsis oceanica|type=polypeptide|length=443bp
MGERHLQENLGDEIKALRPPAINIMHLGKQTLSLVALSIIFVSISLLARH
DVLTANNLQEPFHGGSFPFCPYYEDIPSPFPASFWYVKNHKTASSSLSGV
FRSIGAHHGVAILSFNRRKETLAMLKQSLNRTYETNEHAGLTDHLPYSRQ
AAALFKRPFYLFSSVREPVSQFHSGFVEKCLFQANNAAEEQGIINTTLIA
EMRERLEDSCFAGNFANRTTRAKSMQENKQLKYLGDSGEEKEKLTVESVA
SAYDFLFVKERLHESLVAFAILFNVDFDDIAHVASKVRTGKYTDASQIPA
EINELVRSKTAKDLALWEHANKLLDEHIVKINKNCGGEGYFREILEKFGQ
IEEAVSNICAEGYKEWYEEFGFNTTLSYRRDNGQAPRCRDHVVKNVLRKW
EKEGDGVAVGGMIVEDKESEAKKNNKVSEHDGMGKQNGERIR*

mRNA from alignment at scaffold_69:65391..67891-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10824 ID=mRNA_10824|Name=jgi.p|Nanoce1779_2|634319|organism=Nannochloropsis oceanica|type=mRNA|length=2501bp|location=Sequence derived from alignment at scaffold_69:65391..67891- (Nannochloropsis oceanica)
GTATTCATGGGCGAACGGCATCTTCAGGAGAACCTCGGTGATGAGATCAA
GGTACGTCCGTTTGTATGCGTGGAAAGAGAGGAGAAATAGGGTCTCTCAG
ACATCTACGCATACAAGCACGCATCTTGCATCTATGTGAGAAAGTGAGAG
TGTTTGTGTGTGTATGTATGTGATGAATTATACTCATATGCAATAGATGC
CTTTCCTGTATGCTCATTTATGAAGTCCAGGACGCCTGTCATTCGTCTAT
CATTATTGACAGAGGCAATATTCCTCCTCTTCTTCTTCTTTTTTTTGGGG
GGGGTAGCAGCAGCAGCAGCAAGCGGCGAGGCCAGAGAAGAAATTCAAGG
ATGTATGTGTGTGTGTGTGTGTGTGTGTGTGTACCGTGTTACAGTACGGG
ATGAAACAATGTCTCTTTATCCTCCTGAAGAAGAGATAGGGAGGGGATGG
CATAATCTGCCTTCTATATGTTGCATTCTAATTATTTTTCCACCCTGCTT
CCTCTACTGACACAGGCCCTTCGTCCGCCAGCCATAAACATCATGCATCT
GGGGAAGCAGACTTTGTCGCTGGTAGCATTGTCCATCATTTTTGTAAGCA
TCAGTCTGTTAGCTAGACATGATGTGTTGACAGCGAACAATTTGCAGGAA
CCCTTCCACGGGGGTTCCTTTCCTTTTTGTCCTTATTACGAAGACATCCC
CAGCCCCTTCCCGGCTTCGTTTTGGTACGTTAAGAACCACAAGACTGCTA
GCAGCTCCTTATCAGGTGTATTCCGCAGCATAGGTGCTCATCACGGAGTT
GCCATCCTCTCATTCAACCGAAGGAAAGAAACTCTCGCCATGTTGAAGCA
GTCCCTCAATAGGACTTATGAAACGAATGAACACGCCGGCCTGACCGATC
ATTTACCATATTCGCGGCAGGCGGCCGCTTTATTCAAACGACCTTTTTAC
CTTTTCTCCTCTGTGCGGGAGCCTGTGTCGCAATTTCATTCAGGTTTTGT
CGAAAAGTGTCTTTTTCAGGCAAACAATGCTGCAGAGGAGCAGGGGATAA
TTAATACCACGTTAATTGCGGAGATGAGAGAGCGACTAGAAGACAGTTGT
TTTGCAGGCAACTTTGCGAATCGGACAACAAGGGCAAAGAGTATGCAAGA
GAATAAACAATTAAAGTATCTGGGTGATTCGGGTGAGGAAAAGGAGAAGC
TGACGGTTGAATCTGTCGCTTCCGCTTACGACTTCCTCTTCGTGAAGGAG
AGACTGCATGAATCACTGGTAGCCTTCGCTATCCTTTTCAATGTTGATTT
CGATGACATTGCCCACGTTGCATCGAAAGTACGGACAGGAAAATATACAG
ATGCTAGTCAGATCCCCGCCGAAATAAACGAGCTTGTTCGCAGCAAGACA
GCGAAAGATCTGGCACTGTGGGAACATGCCAATAAGCTCTTGGATGAGCA
CATCGTCAAAATCAATAAAAACTGCGGTGGAGAGGGTTACTTCAGAGAAA
TTCTAGAAAAATTTGGCCAAATTGAAGAAGCGGTTTCAAACATCTGTGCA
GAGGGATATAAAGAATGGTATGAAGAATTTGGATTCAATACCACGCTGTC
CTACCGGAGGGACAATGGACAAGCACCCCGGTGCAGGGATCATGTGGTCA
AGAATGTACTTCGAAAGTGGGAGAAAGAGGGGGATGGGGTAGCGGTGGGT
GGGATGATAGTGGAAGACAAGGAATCGGAGGCGAAGAAAAATAATAAAGT
GAGTGAGCACGATGGCATGGGAAAGCAGAATGGAGAAAGAATTAGATAGA
AAACAAGATTTGTAATCTAATTCGTTCTAATACTAAGCTAAATATATAGA
GCATCAAGCTCTCCACACGCACTTGAAATTTTTATCAATTCTCAATCACT
CATTGCATCCTTTACAATCTCTCCATTGCCATACGGGAGGCGGTGGATCT
AAGTGGGGATCCCACTTAGTCTGCACGTAATCTAAAAGCTTTTCACCTAT
GTCGATCTCCGTCACATTCACAGCTGCAATTTTCACATATATATGCTCCC
TTTTACTCCATGAAAAGGAGAGGACAGGAGGGAAGGGATGAGGGGGGAGC
ACGCCAAATATTTGAACTTTAACCAGACGAAGAAGATACCACAACACACC
TCGCTATGTGAGGACTCCTGGGAGGGGCAGGGATAGAGAGGAAGAAGCCT
TCTTCTTTACAGATGCAATAAGCCGCCTTCTCCCTCGAAAGTAGGAACGA
GGAAGGCGCGGGCAGCAGCACATGTCTCATCATTTTTCCTTCAACCAAAA
TAAAAAAGAAAGACCAATAATAATCAAATGGGCAGCAAGAAGCGCCAAAT
TTGCGAATGCAAGAGGCATAAGTGGTATGTAGAGGACCTTATAGAGATGG
TGCGCCAATCTAGGGGAATAGAGGCAGACCAGACGACGTCGAGGAAGAAG
AAGAACAAGAAGCCTTGGCAACGGCGAATGTCATGATGATGATTATAGAG
C

Coding sequence (CDS) from alignment at scaffold_69:65391..67891-

>mRNA_10824 ID=mRNA_10824|Name=jgi.p|Nanoce1779_2|634319|organism=Nannochloropsis oceanica|type=CDS|length=2658bp|location=Sequence derived from alignment at scaffold_69:65391..67891- (Nannochloropsis oceanica)
GCCCTTCGTCCGCCAGCCATAAACATCATGCATCTGGGGAAGCAGACTTT
GTCGCTGGTAGCATTGTCCATCATTTTTGTAAGCATCAGTCTGTTAGCTA
GACATGATGTGTTGACAGCGAACAATTTGCAGGAACCCTTCCACGGGGGT
TCCTTTCCTTTTTGTCCTTATTACGAAGACATCCCCAGCCCCTTCCCGGC
TTCGTTTTGGTACGTTAAGAACCACAAGACTGCTAGCAGCTCCTTATCAG
GTGTATTCCGCAGCATAGGTGCTCATCACGGAGTTGCCATCCTCTCATTC
AACCGAAGGAAAGAAACTCTCGCCATGTTGAAGCAGTCCCTCAATAGGAC
TTATGAAACGAATGAACACGCCGGCCTGACCGATCATTTACCATATTCGC
GGCAGGCGGCCGCTTTATTCAAACGACCTTTTTACCTTTTCTCCTCTGTG
CGGGAGCCTGTGTCGCAATTTCATTCAGGTTTTGTCGAAAAGTGTCTTTT
TCAGGCAAACAATGCTGCAGAGGAGCAGGGGATAATTAATACCACGTTAA
TTGCGGAGATGAGAGAGCGACTAGAAGACAGTTGTTTTGCAGGCAACTTT
GCGAATCGGACAACAAGGGCAAAGAGTATGCAAGAGAATAAACAATTAAA
GTATCTGGGTGATTCGGGTGAGGAAAAGGAGAAGCTGACGGTTGAATCTG
TCGCTTCCGCTTACGACTTCCTCTTCGTGAAGGAGAGACTGCATGAATCA
CTGGTAGCCTTCGCTATCCTTTTCAATGTTGATTTCGATGACATTGCCCA
CGTTGCATCGAAAGTACGGACAGGAAAATATACAGATGCTAGTCAGATCC
CCGCCGAAATAAACGAGCTTGTTCGCAGCAAGACAGCGAAAGATCTGGCA
CTGTGGGAACATGCCAATAAGCTCTTGGATGAGCACATCGTCAAAATCAA
TAAAAACTGCGGTGGAGAGGGTTACTTCAGAGAAATTCTAGAAAAATTTG
GCCAAATTGAAGAAGCGGTTTCAAACATCTGTGCAGAGGGATATAAAGAA
TGGTATGAAGAATTTGGATTCAATACCACGCTGTCCTACCGGAGGGACAA
TGGACAAGCACCCCGGTGCAGGGATCATGTGGTCAAGAATGTACTTCGAA
AGTGGGAGAAAGAGGGGGATGGGGTAGCGGTGGGTGGGATGATAGTGGAA
GACAAGGAATCGGAGGCGAAGAAAAATAATAAAGTGAGTGAGCACGATGG
CATGGGAAAGCAGAATGGAGAAAGAATTAGATAGATGGGCGAACGGCATC
TTCAGGAGAACCTCGGTGATGAGATCAAGGCCCTTCGTCCGCCAGCCATA
AACATCATGCATCTGGGGAAGCAGACTTTGTCGCTGGTAGCATTGTCCAT
CATTTTTGTAAGCATCAGTCTGTTAGCTAGACATGATGTGTTGACAGCGA
ACAATTTGCAGGAACCCTTCCACGGGGGTTCCTTTCCTTTTTGTCCTTAT
TACGAAGACATCCCCAGCCCCTTCCCGGCTTCGTTTTGGTACGTTAAGAA
CCACAAGACTGCTAGCAGCTCCTTATCAGGTGTATTCCGCAGCATAGGTG
CTCATCACGGAGTTGCCATCCTCTCATTCAACCGAAGGAAAGAAACTCTC
GCCATGTTGAAGCAGTCCCTCAATAGGACTTATGAAACGAATGAACACGC
CGGCCTGACCGATCATTTACCATATTCGCGGCAGGCGGCCGCTTTATTCA
AACGACCTTTTTACCTTTTCTCCTCTGTGCGGGAGCCTGTGTCGCAATTT
CATTCAGGTTTTGTCGAAAAGTGTCTTTTTCAGGCAAACAATGCTGCAGA
GGAGCAGGGGATAATTAATACCACGTTAATTGCGGAGATGAGAGAGCGAC
TAGAAGACAGTTGTTTTGCAGGCAACTTTGCGAATCGGACAACAAGGGCA
AAGAGTATGCAAGAGAATAAACAATTAAAGTATCTGGGTGATTCGGGTGA
GGAAAAGGAGAAGCTGACGGTTGAATCTGTCGCTTCCGCTTACGACTTCC
TCTTCGTGAAGGAGAGACTGCATGAATCACTGGTAGCCTTCGCTATCCTT
TTCAATGTTGATTTCGATGACATTGCCCACGTTGCATCGAAAGTACGGAC
AGGAAAATATACAGATGCTAGTCAGATCCCCGCCGAAATAAACGAGCTTG
TTCGCAGCAAGACAGCGAAAGATCTGGCACTGTGGGAACATGCCAATAAG
CTCTTGGATGAGCACATCGTCAAAATCAATAAAAACTGCGGTGGAGAGGG
TTACTTCAGAGAAATTCTAGAAAAATTTGGCCAAATTGAAGAAGCGGTTT
CAAACATCTGTGCAGAGGGATATAAAGAATGGTATGAAGAATTTGGATTC
AATACCACGCTGTCCTACCGGAGGGACAATGGACAAGCACCCCGGTGCAG
GGATCATGTGGTCAAGAATGTACTTCGAAAGTGGGAGAAAGAGGGGGATG
GGGTAGCGGTGGGTGGGATGATAGTGGAAGACAAGGAATCGGAGGCGAAG
AAAAATAATAAAGTGAGTGAGCACGATGGCATGGGAAAGCAGAATGGAGA
AAGAATTAGATAGATGGGCGAACGGCATCTTCAGGAGAACCTCGGTGATG
AGATCAAG

Synonyms

Publications