jgi.p|Nanoce1779_2|612984, mRNA_10823 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|612984
Unique Name	mRNA_10823
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2134
Alignment location	scaffold_69:61213..63439 -

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Properties


Property Name	Value
TranscriptId	613070
Track	FilteredModels2
ProteinId	612984

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_69	supercontig	scaffold_69:61213..63439 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612984	gene_10823	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612984	mRNA_10823-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10823	CDS_10823	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_69:61213..63439-
coding sequence from alignment at scaffold_69:61213..63439-

mRNA sequence

>mRNA_10823 ID=mRNA_10823|Name=jgi.p|Nanoce1779_2|612984|organism=Nannochloropsis oceanica|type=mRNA|length=2134bp
CAAGTCAGCTAGAGAAAAAGGTGGGCCTCAACGTGATCCTTGAACCCGGC
GACTTTGCTTTGGACTCTGCTTTGGAACAAAGCGACAAACACAAAGGTCC
GATTGTTATCCGAAGGTTTCGTTTGATTTTTTTTCACGTGCCCAAGGTAG
CCTGCGAGGAGTTCAAGAAGCTTTTCCGACGGATGGAAGGGTATGAAGAT
TGGGCCACTTCATATAATGATCCCCCCGGACTTTATTCTCCCGACAAGCC
TCTGTCCAGGCTGCCTCATGACCCAAAAATAAATGGGCTTACCTATTTGA
CACAGCTACCCTTGGATGAAGCCAATATGATTTTAAACGATCCGACCTGG
ACAAAGGCCATTTTCCTGCGCGACCCCATGACCAGGTTTGTGTCGGCGTA
CTTGGACAAAATTAGACGACATCATCGTAATGCAGAGATGCGAAAGCTTT
CCTTTGAGGAATTTATCACCAAGGTAGAGCAAGGACTGAAAAATAGGCAT
TGGAATCCACAGAGTCAGTTTTATAACCTTGATAAGTGGCTGCCAGTCAT
GGATTTTGTGGGTGCCTTTGAAAGTCTTGCTGAGGACACGGAGACACTTT
TGCGCAAGCTTGGAGCTTGGGAAGAATTTGGTGCCGATGGTTGGGGCGAG
GATGGCGCTAGTGCCATCTTCAGAGGAGAAAAGAACAAGTTGCATTCAGG
AGGGGCTGATGAGAAGGTGAACATCTTCTACAGCAATGCTACCACGAAAA
ACAGAGTCATGGCACTGATGGCACCGGATTTAAACTATATATGAATATGA
CGGAGATGAAAGAATCATGTGTCAGAAAATAGCTTATACCTGGGTTTCAC
ACAAGATCGAGAAAAGAGCATGAATCGATGGTTCAGATTGTGTTCGGGTA
CACAAAGAACGTAACAAAGGCAGAGCAAGTCCTGGATATTATTCAGATGC
TCCGCGATATCAATATCGAGGTTCTCTTCTTCAGAGAGTCGTTGACGTGG
ATATACTGCAGCATCATTTCTTTGCCAGCTGCCACGGTAAGGGGCCTTGG
GCGATGAGTTGATAGGGTGGACGAAGACGTTCCTGCGGGACGAGGAGATG
AAAAAGGGTAACGACCTCGGCACTTCCCTGGATGTTTCCAATTGTCTTGT
CCAGCACAAGGAGTTTCATTACAACGAGCAGTGGGAGGCGGAGACGAGCA
TCCAGCTGAAAGCAAAATCGCGCACCTTTGTGTTTGCGGAGTTGTTGGGT
GTGGACAAGGACATGGTGAGGGATATGGCCAGGATAGAGTCTCACCATTG
CTTTGTGACGTACTGTGGGTACGTTTTCATGTTTCGTCCTTCCTGCACGT
GCCAGCCCTGTAGGGACATGGAAAATGTGATGAGTGCGAGATTGTGGCAT
CGGGGGAGTGCAAAGGGGGCAAACGAACAAACCTGAAGGCGTTTGTTCCT
GCTATTCAGGAGAAGCGCAGGAATTGTGGCTCTGCCTTCGAGCGGGGGTG
GGCTGTGCTGGCCGAATGCAAAGAGGAACGATTGGGTGCTGAAGGTTGTG
GACATGGACCAGCGCAAAGCTTATTCAAGAGGACAAGGCCATAAACTGAA
CATGTCGTGATGATTTCCGGCTGGCTCAAATCGCGGAGTTGCCGAAGCAG
CGCGCGACGGGAGGGGGGGGGGTCGTCAAGGGCGAGGAAGAGCGAGGGGA
ATTTCCTTGTTTATTATGCGCAAGAGCTCAAGCAAGAGGAAGAGTGGCTC
TTCAAGTCAGCTCTTATCGGGCTTAATTTGGTTCTCACAATGTGTCAATA
AATTTATAATCGCGGCTGTATCGTTTTCTAGGTATCAGCATGACGAATGA
AGGATCCAATTTAAGCTCCACCAGGCTTAGATTGGAGCCAACTTTACATG
GCTTTAAATTGGTACGCTTCTCGTTCTCATAGGGATACGTTTTTTCCGTC
AGAAGCCCTCTTATCATGGGGTATCGTAAACAACCTCGCGAATGCCCCCT
CGATCTGCCATCATGTCAGCAATGGCAAAGGCCCAACAGGATGCACATTT
CCCCTGCGTTCTCGGCGAAACAAGCAGCGTTTCCTTGTACTTTAGATATT
TGGGAAGTTCGTCTGTAGTGGCTTCCATGGCCCT

protein sequence of jgi.p|Nanoce1779_2|612984

>mRNA_10823-protein ID=mRNA_10823-protein|Name=jgi.p|Nanoce1779_2|612984|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MEGYEDWATSYNDPPGLYSPDKPLSRLPHDPKINGLTYLTQLPLDEANMI
LNDPTWTKAIFLRDPMTRFVSAYLDKIRRHHRNAEMRKLSFEEFITKVEQ
GLKNRHWNPQSQFYNLDKWLPVMDFVGAFESLAEDTETLLRKLGAWEEFG
ADGWGEDGASAIFRGEKNKLHSGGADEKVNIFYSNATTKNRVMALMAPDL
NYI*

mRNA from alignment at scaffold_69:61213..63439-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10823 ID=mRNA_10823|Name=jgi.p|Nanoce1779_2|612984|organism=Nannochloropsis oceanica|type=mRNA|length=2227bp|location=Sequence derived from alignment at scaffold_69:61213..63439- (Nannochloropsis oceanica)
CAAGTCAGCTAGAGAAAAAGGTGGGCCTCAACGTGATCCTTGAACCCGGC
GACTTTGCTTTGGACTCTGCTTTGGAACAAAGCGACAAACACAAAGGTCC
GATTGTTATCCGAAGGTTTCGTTTGATTTTTTTTCACGTGCCCAAGGTAG
CCTGCGAGGAGTTCAAGAAGCTTTTCCGACGGATGGAAGGGTATGAAGAT
TGGGCCACTTCATATAATGATCCCCCCGGACTTTATTCTCCCGACAAGCC
TCTGTCCAGGCTGCCTCATGACCCAAAAATAAATGGGCTTACCTATTTGA
CACAGCTACCCTTGGATGAAGCCAATATGATTTTAAACGATCCGACCTGG
ACAAAGGCCATTTTCCTGCGCGACCCCATGACCAGGTTTGTGTCGGCGTA
CTTGGACAAAATTAGACGACATCATCGTAATGCAGAGATGCGAAAGCTTT
CCTTTGAGGAATTTATCACCAAGGTAGAGCAAGGACTGAAAAATAGGCAT
TGGAATCCACAGAGTCAGTTTTATAACCTTGATAAGTGGCTGCCAGTCAT
GGATTTTGTGGGTGCCTTTGAAAGTCTTGCTGAGGACACGGAGACACTTT
TGCGCAAGCTTGGAGCTTGGGAAGAATTTGGTGCCGATGGTTGGGGCGAG
GATGGCGCTAGTGCCATCTTCAGAGGAGAAAAGAACAAGTTGCATTCAGG
AGGGGCTGATGAGAAGGTGAACATCTTCTACAGCAATGCTACCACGAAAA
ACAGAGTCATGGCACTGATGGCACCGGATTTAAACTATATATGAATATGA
CGGAGATGAAAGAATCATGTGTCAGAAAATAGCTTATACCTGGGTTTCAC
ACAAGATCGAGAAAAGAGCATGAATCGATGGTTCAGATTGTGTTCGGGTA
CACAAAGAACGTAACAAAGGCAGAGCAAGTCCTGGATATTATTCAGATGC
TCCGCGATATCAATATCGAGGTTCTCTTCTTCAGAGAGTCGTTGACGTGG
ATATACTGCAGCATCATTTCTTTGCCAGCTGCCACGGTAAGGGGCCTTGG
GCGATGAGTTGATAGGGTGGACGAAGACGTTCCTGCGGGACGAGGAGATG
AAAAAGGGTAACGACCTCGGCACTTCCCTGGATGTTTCCAATTGTCTTGT
CCAGCACAAGGAGTTTCATTACAACGAGCAGTGGGAGGCGGAGACGAGCA
TCCAGCTGAAAGCAAAATCGCGCACCTTTGTGTTTGCGGAGTTGTTGGGT
GTGGACAAGGACATGGTGAGGGATATGGCCAGGATAGAGTCTCACCATTG
CTTTGTGACGTACTGTGGGTACGTTTTCATGTTTCGTCCTTCCTGCACGT
GCCAGCCCTGTAGGGACATGGAAAATGTGATGAGTGCGAGATTGTGGCAT
CGGGGGAGTGCAAAGGGGGCAAACGAACAAACCTGAAGGCGTTTGTTCCT
GCTATTCAGGAGAAGCGCAGGAATTGTGGCTCTGCCTTCGAGCGGGGGTG
GGCTGTGCTGGCCGAATGCAAAGAGGAACGATTGGGTGCTGAAGGTTGTG
GACATGGACCAGCGCAAAGCTTATTCAAGAGGACAAGGCCATAAACTGAA
CATGTCGTGATGATTTCCGGCTGGCTCAAATCGCGGAGTTGCCGAAGCAG
CGCGCGACGGGAGGGGGGGGGGTCGTCAAGGGCGAGGAAGAGCGAGGGGA
ATTTCCTTGTTTATTATGCGCAAGAGCTCAAGCAAGAGGAAGAGTGGCTC
TTCAAGTCAGCTCTTATCGGGCTTAATTTGGTTCTCACAATGTGTCAATA
AATTTATAATCGCGGCTGTATCGTTTTCTAGGTATCAGCATGACGAATGA
AGGATCCAATTTAAGCTCCACCAGGCTTAGATTGGAGCCAACTTTACATG
GCTTTAAATTGGTACGCTTCTCGTTCTCATAGGGATACGTTTTTTCCGTC
AGAAGCCCTCTTATCATGGGGTATCGTAAACAACCTCGCGAATGCCCCCC
TGTGTACACGGAAACAACCACGGAAGAAGACGTGATAGAAGCTCTTGCGG
GGACAGATGTTCTCTCACACGTCCCCTGGTATGTAAACTTACTCGATCTG
CCATCATGTCAGCAATGGCAAAGGCCCAACAGGATGCACATTTCCCCTGC
GTTCTCGGCGAAACAAGCAGCGTTTCCTTGTACTTTAGATATTTGGGAAG
TTCGTCTGTAGTGGCTTCCATGGCCCT

Coding sequence (CDS) from alignment at scaffold_69:61213..63439-

>mRNA_10823 ID=mRNA_10823|Name=jgi.p|Nanoce1779_2|612984|organism=Nannochloropsis oceanica|type=CDS|length=612bp|location=Sequence derived from alignment at scaffold_69:61213..63439- (Nannochloropsis oceanica)
ATGGAAGGGTATGAAGATTGGGCCACTTCATATAATGATCCCCCCGGACT
TTATTCTCCCGACAAGCCTCTGTCCAGGCTGCCTCATGACCCAAAAATAA
ATGGGCTTACCTATTTGACACAGCTACCCTTGGATGAAGCCAATATGATT
TTAAACGATCCGACCTGGACAAAGGCCATTTTCCTGCGCGACCCCATGAC
CAGGTTTGTGTCGGCGTACTTGGACAAAATTAGACGACATCATCGTAATG
CAGAGATGCGAAAGCTTTCCTTTGAGGAATTTATCACCAAGGTAGAGCAA
GGACTGAAAAATAGGCATTGGAATCCACAGAGTCAGTTTTATAACCTTGA
TAAGTGGCTGCCAGTCATGGATTTTGTGGGTGCCTTTGAAAGTCTTGCTG
AGGACACGGAGACACTTTTGCGCAAGCTTGGAGCTTGGGAAGAATTTGGT
GCCGATGGTTGGGGCGAGGATGGCGCTAGTGCCATCTTCAGAGGAGAAAA
GAACAAGTTGCATTCAGGAGGGGCTGATGAGAAGGTGAACATCTTCTACA
GCAATGCTACCACGAAAAACAGAGTCATGGCACTGATGGCACCGGATTTA
AACTATATATGA

Synonyms

Publications