jgi.p|Nanoce1779_2|561138, mRNA_10820 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|561138
Unique NamemRNA_10820
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length309
Alignment locationscaffold_69:56315..56623 +

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Properties
Property NameValue
TranscriptId561224
TrackFilteredModels2
ProteinId561138
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_69supercontigscaffold_69:56315..56623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|561138gene_10820Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|561138mRNA_10820-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10820CDS_10820Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10820 ID=mRNA_10820|Name=jgi.p|Nanoce1779_2|561138|organism=Nannochloropsis oceanica|type=mRNA|length=309bp
ACGCGAAGCACGTTTGGTTGCTTTTCAACGTTGGAGGCGGCCAATGTGCA
TGCCAAAAAGTCTCCAAGAACAGTGCGATGCGTTTTACCCCGTTGTGCGG
GGCGCCAGTCCATCGTAATAGAGAAATTGGTACTTTTCAAAGGCTTTGGT
GCTCACCCTAACCCTAGCCATGGAGGGGCTCAGCGATACCTGTCCTGTGT
GGGGGCTGCACCAAGGCGAAACGGAAGGGCCCATGTGCGGCAGCATCAGC
CTGACTCCGGACGAGTGCGAGAAGATAAAGGAGCTAAGGAATGCCCGCTG
CGGGGACTC
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protein sequence of jgi.p|Nanoce1779_2|561138

>mRNA_10820-protein ID=mRNA_10820-protein|Name=jgi.p|Nanoce1779_2|561138|organism=Nannochloropsis oceanica|type=polypeptide|length=103bp
TRSTFGCFSTLEAANVHAKKSPRTVRCVLPRCAGRQSIVIEKLVLFKGFG
AHPNPSHGGAQRYLSCVGAAPRRNGRAHVRQHQPDSGRVREDKGAKECPL
RGL
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mRNA from alignment at scaffold_69:56315..56623+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10820 ID=mRNA_10820|Name=jgi.p|Nanoce1779_2|561138|organism=Nannochloropsis oceanica|type=mRNA|length=309bp|location=Sequence derived from alignment at scaffold_69:56315..56623+ (Nannochloropsis oceanica)
ACGCGAAGCACGTTTGGTTGCTTTTCAACGTTGGAGGCGGCCAATGTGCA
TGCCAAAAAGTCTCCAAGAACAGTGCGATGCGTTTTACCCCGTTGTGCGG
GGCGCCAGTCCATCGTAATAGAGAAATTGGTACTTTTCAAAGGCTTTGGT
GCTCACCCTAACCCTAGCCATGGAGGGGCTCAGCGATACCTGTCCTGTGT
GGGGGCTGCACCAAGGCGAAACGGAAGGGCCCATGTGCGGCAGCATCAGC
CTGACTCCGGACGAGTGCGAGAAGATAAAGGAGCTAAGGAATGCCCGCTG
CGGGGACTC
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Coding sequence (CDS) from alignment at scaffold_69:56315..56623+

>mRNA_10820 ID=mRNA_10820|Name=jgi.p|Nanoce1779_2|561138|organism=Nannochloropsis oceanica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_69:56315..56623+ (Nannochloropsis oceanica)
ACGCGAAGCACGTTTGGTTGCTTTTCAACGTTGGAGGCGGCCAATGTGCA
TGCCAAAAAGTCTCCAAGAACAGTGCGATGCGTTTTACCCCGTTGTGCGG
GGCGCCAGTCCATCGTAATAGAGAAATTGGTACTTTTCAAAGGCTTTGGT
GCTCACCCTAACCCTAGCCATGGAGGGGCTCAGCGATACCTGTCCTGTGT
GGGGGCTGCACCAAGGCGAAACGGAAGGGCCCATGTGCGGCAGCATCAGC
CTGACTCCGGACGAGTGCGAGAAGATAAAGGAGCTAAGGAATGCCCGCTG
CGGGGACTC
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Synonyms
Publications