jgi.p|Nanoce1779_2|575256, mRNA_1082 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575256
Unique Name	mRNA_1082
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1003
Alignment location	scaffold_2:1176251..1177253 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	575342
Track	FilteredModels2
ProteinId	575256

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1176251..1177253 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575256	gene_1082	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575256	mRNA_1082-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1082	CDS_1082	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1176251..1177253+
coding sequence from alignment at scaffold_2:1176251..1177253+

mRNA sequence

>mRNA_1082 ID=mRNA_1082|Name=jgi.p|Nanoce1779_2|575256|organism=Nannochloropsis oceanica|type=mRNA|length=1003bp
ACAGGAGATTGCGGACAGTCCCAGCCAGGCAAGCAAGCAGCGGCATCAGC
GTTCTCATCTACCTCCCCCCCCCGGCGTTATCCGCTCGCCTGCTTCCGAC
GCTCGGCTAGGCCCCACCGCACTCGACCTCCATCGCTACCGACGCGCCTT
AAGCCATCCAAATTGAAATCCTCCTAGCGAGTATTCTAGTTCTAAGCATA
TCCACACACGACATTCCCACTTCCTCGCCACACCATGGTCAAATTCGGAG
AGGCGCTCTCGGCGTTCATTAAGTTCTTGGCTGGGCCAACCTACTCCAGC
AATGACTACGAACTTGCCATCAAGGCAAGCAAGAATCTAGAACATTTATT
GGAGCACGAATGGGGCGCGCAGGGCAAGGGGTTGCACGAGAAAATCTCCT
GGGTGCAAGATTCCTCCTCACCTTTGCCCGAGGACCTGATGCGTAGGATG
CGTTTCCTCGCCACAATCCGCAACAAACTCATTCACGATGTGGAATTTAC
AAAGATTGAGAATCGCAGCAAGTTTATTGAGACGTACGAACGCTCCAAAC
GAGAACTTCAGGCCATCCTGGTGCAACGGGGGTCTTCTCGAAGCAATGAC
TGTGCAATTATGTAATCATACTGGTTGCCTAAAAAGGAAGCAAAAGAAAA
GAAATCAGAAAGAAGATGAGAGGAAGGTCTGGAGGACGAAACAGAATGAT
CCATAAATCTGAATGGATCGGAAACAGTTTAGGCTCCGTATTGTTATTTC
AGGAGATGCAGAAGATTGAATGGCGGTCAACGCACAAGGAAAACGGCACG
GTGCGCATGTCGTTTTCCTGTTTTGGTGGCGTCAGCATTCTCCGCCCACC
CTATCACTCTTCCAAGTATCGACATGATAACGATTGTATAAAGTGGTCGT
TTCTTTTATCGATATGGTTTTTGTGTCATTTTTCGCTTCGAATTTTATCT
CATATTTTAACCTTAGCCTACCCTTTATCCCTCTACTTGAGAACAAACGG
GCT

protein sequence of jgi.p|Nanoce1779_2|575256

>mRNA_1082-protein ID=mRNA_1082-protein|Name=jgi.p|Nanoce1779_2|575256|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MVKFGEALSAFIKFLAGPTYSSNDYELAIKASKNLEHLLEHEWGAQGKGL
HEKISWVQDSSSPLPEDLMRRMRFLATIRNKLIHDVEFTKIENRSKFIET
YERSKRELQAILVQRGSSRSNDCAIM*

mRNA from alignment at scaffold_2:1176251..1177253+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1082 ID=mRNA_1082|Name=jgi.p|Nanoce1779_2|575256|organism=Nannochloropsis oceanica|type=mRNA|length=1003bp|location=Sequence derived from alignment at scaffold_2:1176251..1177253+ (Nannochloropsis oceanica)
ACAGGAGATTGCGGACAGTCCCAGCCAGGCAAGCAAGCAGCGGCATCAGC
GTTCTCATCTACCTCCCCCCCCCGGCGTTATCCGCTCGCCTGCTTCCGAC
GCTCGGCTAGGCCCCACCGCACTCGACCTCCATCGCTACCGACGCGCCTT
AAGCCATCCAAATTGAAATCCTCCTAGCGAGTATTCTAGTTCTAAGCATA
TCCACACACGACATTCCCACTTCCTCGCCACACCATGGTCAAATTCGGAG
AGGCGCTCTCGGCGTTCATTAAGTTCTTGGCTGGGCCAACCTACTCCAGC
AATGACTACGAACTTGCCATCAAGGCAAGCAAGAATCTAGAACATTTATT
GGAGCACGAATGGGGCGCGCAGGGCAAGGGGTTGCACGAGAAAATCTCCT
GGGTGCAAGATTCCTCCTCACCTTTGCCCGAGGACCTGATGCGTAGGATG
CGTTTCCTCGCCACAATCCGCAACAAACTCATTCACGATGTGGAATTTAC
AAAGATTGAGAATCGCAGCAAGTTTATTGAGACGTACGAACGCTCCAAAC
GAGAACTTCAGGCCATCCTGGTGCAACGGGGGTCTTCTCGAAGCAATGAC
TGTGCAATTATGTAATCATACTGGTTGCCTAAAAAGGAAGCAAAAGAAAA
GAAATCAGAAAGAAGATGAGAGGAAGGTCTGGAGGACGAAACAGAATGAT
CCATAAATCTGAATGGATCGGAAACAGTTTAGGCTCCGTATTGTTATTTC
AGGAGATGCAGAAGATTGAATGGCGGTCAACGCACAAGGAAAACGGCACG
GTGCGCATGTCGTTTTCCTGTTTTGGTGGCGTCAGCATTCTCCGCCCACC
CTATCACTCTTCCAAGTATCGACATGATAACGATTGTATAAAGTGGTCGT
TTCTTTTATCGATATGGTTTTTGTGTCATTTTTCGCTTCGAATTTTATCT
CATATTTTAACCTTAGCCTACCCTTTATCCCTCTACTTGAGAACAAACGG
GCT

Coding sequence (CDS) from alignment at scaffold_2:1176251..1177253+

>mRNA_1082 ID=mRNA_1082|Name=jgi.p|Nanoce1779_2|575256|organism=Nannochloropsis oceanica|type=CDS|length=381bp|location=Sequence derived from alignment at scaffold_2:1176251..1177253+ (Nannochloropsis oceanica)
ATGGTCAAATTCGGAGAGGCGCTCTCGGCGTTCATTAAGTTCTTGGCTGG
GCCAACCTACTCCAGCAATGACTACGAACTTGCCATCAAGGCAAGCAAGA
ATCTAGAACATTTATTGGAGCACGAATGGGGCGCGCAGGGCAAGGGGTTG
CACGAGAAAATCTCCTGGGTGCAAGATTCCTCCTCACCTTTGCCCGAGGA
CCTGATGCGTAGGATGCGTTTCCTCGCCACAATCCGCAACAAACTCATTC
ACGATGTGGAATTTACAAAGATTGAGAATCGCAGCAAGTTTATTGAGACG
TACGAACGCTCCAAACGAGAACTTCAGGCCATCCTGGTGCAACGGGGGTC
TTCTCGAAGCAATGACTGTGCAATTATGTAA

Synonyms

Publications