jgi.p|Nanoce1779_2|612964, mRNA_10815 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|612964
Unique NamemRNA_10815
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1296
Alignment locationscaffold_69:45008..46806 -

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Properties
Property NameValue
TranscriptId613050
TrackFilteredModels2
ProteinId612964
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_69supercontigscaffold_69:45008..46806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612964gene_10815Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612964mRNA_10815-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10815CDS_10815Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10815 ID=mRNA_10815|Name=jgi.p|Nanoce1779_2|612964|organism=Nannochloropsis oceanica|type=mRNA|length=1296bp
CGTGCGGCAGCACAAACAGTACCGTCGCAACAACTGATCTTGGCCTTTTT
CGAATCGTCGTGCCCATAGAAATCCCGCCGACCAATCTCCCACCATCATG
GACTTTCAAGGCCAAAAGCTGTCGGAGTACCTGTACTACTACCTCATCAT
CCTCTGCGGGGCCGCCGGCTGGCTATATGGCTACACTCAGCAGTCTTTCC
TCCCCACTTTCTATGCATGGGCGGTGGGGCTCGCCTTGTCCTTGATTGTC
TGCACGCCTGACTGGCCTTTCTACAATCGCCACCCGGTCGCGTGGTTGAA
GGAATTCCCGCGGCTGAGCTCCGTAGGAGGGGATAAGAGGGATTAAGTAT
GGATGGAGAAAGAAGAGGGGACAGGAGATGATATAAATGAATTTTCAAAT
AACGTGGAACAAATGATGTGTGTTTGGAAGGGGAGGGTTGTGAGAAGATG
GGAGGGAGAGAAGTGCTGTGTTCTTGCCCCGGCTTGCTTTAAGCCCAAAG
TAAGGCTTGAAAGAACGCGATAAGCTTCGATGAAATTGAGTGTACGCACT
ATTTCATATGTCGCCAATTTTATTTATATATGCTTTTTGTCCTCAATTCA
GTGGGTGGGTGTTGATGTGCAAGTCAAGACACTGCTCCCATTCTTTGCCT
CTTTTTATCTTTCTCTCCGCTCTTCTTCCCCTGCAATACCTTCACAGCGT
ACAACATCCGACTGGAAATAACAAGTCAACCAGAACGAAATGGATGCTCC
GTCCGATATCATCTCGCCTCCACCTGATTGAGTGGATCGAATCAGGGCAA
GAGTGCCATCTCCAAAACCGGGGCAGATTTTCATCGAATATTTTTGATGA
CAAAGTTGTCTCGTACTTAATGTGAAGACGTCTGTATAGTGTCGCTTCCC
CATCCATACGCGCTGTAACACAGACGCAGAGGTTAGGCAAGTTTATGGAC
CACCCAAAACATACGATAAATGTCGAGGTGCGCTAAAGGAAAAAGTAATT
TAGTGCATTGCTAGTGTTTGGAATTTGTACGCCTGGATCAAAAAGATTTG
TTTACCCTATTCCGCTTTTACAACGAACGAACCAACGAACAACGAACAAC
GAACGAACAACGCTTTGCGTCATGCTTCAAGGACCTCAGTCACCTTGCCC
AGCACGCTGCCATCTTGTGTGCTGAACCTCTTATACCACTCGCTTATCCT
CGCTCATTCCCCATGGGGAAATTTATGTCAGCACAGGAAATCAGCACGGA
AGGAGGCCACCCAATGCCGAACGCATCAAATGCCGCCGCCTCTCCC
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protein sequence of jgi.p|Nanoce1779_2|612964

>mRNA_10815-protein ID=mRNA_10815-protein|Name=jgi.p|Nanoce1779_2|612964|organism=Nannochloropsis oceanica|type=polypeptide|length=83bp
MDFQGQKLSEYLYYYLIILCGAAGWLYGYTQQSFLPTFYAWAVGLALSLI
VCTPDWPFYNRHPVAWLKEFPRLSSVGGDKRD*
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mRNA from alignment at scaffold_69:45008..46806-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10815 ID=mRNA_10815|Name=jgi.p|Nanoce1779_2|612964|organism=Nannochloropsis oceanica|type=mRNA|length=1799bp|location=Sequence derived from alignment at scaffold_69:45008..46806- (Nannochloropsis oceanica)
CGTGCGGCAGCACAAACAGTACCGTCGCAACAACTGATCTTGGCCTTTTT
CGAATCGTCGTGCCCATAGAAATCCCGCCGACCAATCTCCCACCATCATG
GTAAGCCTCGAAACTCTGGACTGACAGGCAATCTCTTTTAACACGAGCGA
GTGTTTCGCACCATGCCTACTTGGGCTCCTTTCGCTGGCTGATTCATTAT
CCTTATTTGATGCGCAGTTCAGGCAGGGATGATGCGAACACGTCGACTTC
TTTGCGCCTCTGGTTTGTGGGTGTCTGTGCCCTCGCTTGTCCTTTGCCAG
CCCACGCTCGTCTGTTGTGTCTTATCGCATTCTCCCCGTACACTCTTGCG
GATGGACTAAATCCAGCTCTTCCTTTGCGATAATTGATTATGTGTGTGCG
GGCGTGTATTCTTTCCCCTGTGAGCATTCCTGCCAGACGTGCCCATGTCG
CTGACTGTGCTATTCTCGCGTTGTATCAACGCCCTTTCACGGCCCCTTTC
TTGTTCTTTGATGATTTCACCATCATCTACCGTCTTTCATTCTCGCCTAA
TCATACTCCCCTCCTCCCTCTCTTCCTCCCTCCATCCCTCCCCTCCCTTG
CAGGACTTTCAAGGCCAAAAGCTGTCGGAGTACCTGTACTACTACCTCAT
CATCCTCTGCGGGGCCGCCGGCTGGCTATATGGCTACACTCAGCAGTCTT
TCCTCCCCACTTTCTATGCATGGGCGGTGGGGCTCGCCTTGTCCTTGATT
GTCTGCACGCCTGACTGGCCTTTCTACAATCGCCACCCGGTCGCGTGGTT
GAAGGAATTCCCGCGGCTGAGCTCCGTAGGAGGGGATAAGAGGGATTAAG
TATGGATGGAGAAAGAAGAGGGGACAGGAGATGATATAAATGAATTTTCA
AATAACGTGGAACAAATGATGTGTGTTTGGAAGGGGAGGGTTGTGAGAAG
ATGGGAGGGAGAGAAGTGCTGTGTTCTTGCCCCGGCTTGCTTTAAGCCCA
AAGTAAGGCTTGAAAGAACGCGATAAGCTTCGATGAAATTGAGTGTACGC
ACTATTTCATATGTCGCCAATTTTATTTATATATGCTTTTTGTCCTCAAT
TCAGTGGGTGGGTGTTGATGTGCAAGTCAAGACACTGCTCCCATTCTTTG
CCTCTTTTTATCTTTCTCTCCGCTCTTCTTCCCCTGCAATACCTTCACAG
CGTACAACATCCGACTGGAAATAACAAGTCAACCAGAACGAAATGGATGC
TCCGTCCGATATCATCTCGCCTCCACCTGATTGAGTGGATCGAATCAGGG
CAAGAGTGCCATCTCCAAAACCGGGGCAGATTTTCATCGAATATTTTTGA
TGACAAAGTTGTCTCGTACTTAATGTGAAGACGTCTGTATAGTGTCGCTT
CCCCATCCATACGCGCTGTAACACAGACGCAGAGGTTAGGCAAGTTTATG
GACCACCCAAAACATACGATAAATGTCGAGGTGCGCTAAAGGAAAAAGTA
ATTTAGTGCATTGCTAGTGTTTGGAATTTGTACGCCTGGATCAAAAAGAT
TTGTTTACCCTATTCCGCTTTTACAACGAACGAACCAACGAACAACGAAC
AACGAACGAACAACGCTTTGCGTCATGCTTCAAGGACCTCAGTCACCTTG
CCCAGCACGCTGCCATCTTGTGTGCTGAACCTCTTATACCACTCGCTTAT
CCTCGCTCATTCCCCATGGGGAAATTTATGTCAGCACAGGAAATCAGCAC
GGAAGGAGGCCACCCAATGCCGAACGCATCAAATGCCGCCGCCTCTCCC
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Coding sequence (CDS) from alignment at scaffold_69:45008..46806-

>mRNA_10815 ID=mRNA_10815|Name=jgi.p|Nanoce1779_2|612964|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at scaffold_69:45008..46806- (Nannochloropsis oceanica)
GACTTTCAAGGCCAAAAGCTGTCGGAGTACCTGTACTACTACCTCATCAT
CCTCTGCGGGGCCGCCGGCTGGCTATATGGCTACACTCAGCAGTCTTTCC
TCCCCACTTTCTATGCATGGGCGGTGGGGCTCGCCTTGTCCTTGATTGTC
TGCACGCCTGACTGGCCTTTCTACAATCGCCACCCGGTCGCGTGGTTGAA
GGAATTCCCGCGGCTGAGCTCCGTAGGAGGGGATAAGAGGGATTAAATGG
ACTTTCAAGGCCAAAAGCTGTCGGAGTACCTGTACTACTACCTCATCATC
CTCTGCGGGGCCGCCGGCTGGCTATATGGCTACACTCAGCAGTCTTTCCT
CCCCACTTTCTATGCATGGGCGGTGGGGCTCGCCTTGTCCTTGATTGTCT
GCACGCCTGACTGGCCTTTCTACAATCGCCACCCGGTCGCGTGGTTGAAG
GAATTCCCGCGGCTGAGCTCCGTAGGAGGGGATAAGAGGGATTAAATG
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Synonyms
Publications