jgi.p|Nanoce1779_2|612955, mRNA_10813 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|612955
Unique Name	mRNA_10813
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2581
Alignment location	scaffold_69:40845..43548 +

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Properties


Property Name	Value
TranscriptId	613041
Track	FilteredModels2
ProteinId	612955

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_69	supercontig	scaffold_69:40845..43548 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612955	gene_10813	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612955	mRNA_10813-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10813	CDS_10813	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_69:40845..43548+
coding sequence from alignment at scaffold_69:40845..43548+

mRNA sequence

>mRNA_10813 ID=mRNA_10813|Name=jgi.p|Nanoce1779_2|612955|organism=Nannochloropsis oceanica|type=mRNA|length=2581bp
GCACCTTCAAGCCCTCCCGCTTCGACGACGGCTACCTGGAGGTGGTGGCC
ATCTCCGGCGTCTTGCATCTGGGGAGAATACGGGTGGGCCTCGATAGGCC
TGTGCGGCTGGCGCAGGCCAAGGAGGTCAGAATCCGAACCAAGAGCTTCT
TGCCAGGGCAGGTCGACGGCGAGCCATGGCGGCTTCCCCGGTGCGAGCTG
ACGCTGCGTCTCAATGGACAGGCACCTGTCCTACAGCACCTGAGCAAGGA
ACTGCTGCAGGTAGGAGGGGAGGGAGAGAGAAGGGGAGAGTGTGCACTGG
TTCTATTTTCTCCTAAGAAATCACATCTCCAGGTATTATCACCTCACTGC
CCCCTCCCTCTCTCTCCTTCCCCGCCTCCCTCCCTCCATCCCTCTCTCAG
TACAACGAGTGGCTGGTGGGTCAAGGTAAGCTGGACGCGGCCGCCAAGGA
CCAGCTCCTTCAAGCCTTCAAGCGCCGTTTGCAGGTGTCGCAGTGAAGAG
AAGAGGGAGGGAGAGAGGAGAGGCGGGCGAATGTGGGTAAATGTCAGTGT
GGCAAGGCCGAGGAGAGGAGGGAAAGGGAGAGAAGAAAGGACGGAGTGTG
TGTATGTACAGGTATAGAAAGTGAAAGCAAAAGCAAAACAAGAGCAGACG
GGGTAACAGAGCAACAAAAGCAGCAGCATCGACATGGATAAAGAAGAGGA
GAAAGGAACCGGGAAAAGCAAGCCGAAAGTCGATTAAATTTGATTGAACA
AAGAAGGAGAAAAGCATCATCTCACTGAAGGAGCCGCGGAAAGAGAGAAA
GAAAAAAAGAAAATTGGGCTTGCGAGCACACAGCAATGCCACATACACAC
AACACTCGCTTGCACTACTCAAGGGGTTGTGGACGGAGAAAAAGGAGTGA
GGAAGGGCTTGTGGAGGCCGCACAACTTGAGCACACGCTACGCCACAGCT
AATGCACGACCACACGCATGCACAACCTTTGTGTTTGTAAAATGAAGGGG
GAAAATTGGAAATAAGCCCTATCCCTAAACTGACCCACGTCTATATTTTG
CATGCCTGCAAAAAAAAACACGCTTATACGACTCTCTGTTCGATGTCAGA
AATCGGTATGAGAAGTCAAATATGGCCAGCGCCGGAACGCTATCTTTACT
ATGCTGGTGTTGACTGTCAGCAGTGACGGGCATAAGCGAGGATGAACCGC
TTCCATTAATCACCGCTTGTATCATTCACGCTATACCTGAGTGCAGTGAG
TAAGATCGTAAATGAATTCAAAAGACTTACGGGAGCACCCTCCCGCAAAG
AGAATATCGCAGTAGAGACGGGAGGTTGAATATCGCACTTTGTCGACCAC
TTTACCCATCGCTTTTTAGATTTGCTCGAGGTTTGTGGGTGACGAAACAT
GCAAAGGTATTAGGCTGTCTACCAACATACCTTTGGACCGTTAAAAAAAA
AATGCTTTTCGGCGACGAGCATGGCCCTCCAACTTCACTGCTGTCACATA
GCATCTCACACTGCAACAGCTCACACACAGCATCACTTCAGCACCGCCGT
GCATGCACCTAAACCTCGGCGTTTCCCTTATTTTTATCGTAATTGCCACC
GCTGCTGCGTTTTTGTCGTCTGCCACCAGTAGCTCCAATAGCATGAGCGA
GACCTGTTCCCGGGACGCTCACAAGCATTGCGTCCCATGCGAAGGCGGCC
TCCCCGCCGTACCGCTTGAGCGCGTGCAGGCTGTCCTTCCCTCTCTGCCC
TTGTGGAAGGCAAGCGACGACCACAAGCGCCTGTCCCGTGCGTTCATCGC
CAAGAACTTCGCTGCCGCACTTGCTTTCCTTAACGCTGTGGGGGCCGTGG
CCGAAGCGGAAGGCCACCACCCGGACTTACACTTGACGAGCTATAGGGAG
GTGGAAATTGTGTTGTACACGCATGCCGTGGGAGGACTGACGGAGAATGA
TTTGATTATGGCGGGGTTGATCGACGCAGTTCCTGCAGTGTATAGCCCCA
AATGGTTGAAGGAGCATCCGGAGGCAGAAAGCACGGCGGCTAAGTAAGGA
GGGTTGGGGTGGAGTGGAAAAAGAGGGGGGGGGGGAGGAGAAAGAAGCAT
GTAAAGAGATCGTACGGAGGAAGAGGGTCAGGAAAGGAAGACAAAGAAGA
GACGCAAGCAGTCAAAGTTGTAAGACAGAGAGAAAGGAGCAGGAATGACT
GGTGGAATGAAGTAACCAATGGAATCCCAAGACCAGTGAAAATTATGACG
CCAGCAAACTTGATACTCAACATTTGTACCATTTGATCTACATTGTCTTT
ACACTGCTAAACACCCTCTCGAGCCGTGCCGTCCACCGCCGTTTTAGTGT
CATGGTGGTGGTGGTGGTGGTAACGCGCGTTATACTCTTGGCTCCCATGC
GACTGCTGGAACACAGCTGGCCCTAGTCCTGCCACTACCCTCTCCTGAAA
CGACGGCACCCTCACACGCATGTCCCATTCCCCCTCCTTCATCCCCTCTT
CCTCCTCCTCAGCCGTCACCTCTTCTCTCCCTTCTGCCATGCTCCTTTTC
TCCAGATCCAAGACTGGTTCCTGATAGAGAT

protein sequence of jgi.p|Nanoce1779_2|612955

>mRNA_10813-protein ID=mRNA_10813-protein|Name=jgi.p|Nanoce1779_2|612955|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MHLNLGVSLIFIVIATAAAFLSSATSSSNSMSETCSRDAHKHCVPCEGGL
PAVPLERVQAVLPSLPLWKASDDHKRLSRAFIAKNFAAALAFLNAVGAVA
EAEGHHPDLHLTSYREVEIVLYTHAVGGLTENDLIMAGLIDAVPAVYSPK
WLKEHPEAESTAAK*

mRNA from alignment at scaffold_69:40845..43548+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10813 ID=mRNA_10813|Name=jgi.p|Nanoce1779_2|612955|organism=Nannochloropsis oceanica|type=mRNA|length=2704bp|location=Sequence derived from alignment at scaffold_69:40845..43548+ (Nannochloropsis oceanica)
GCACCTTCAAGCCCTCCCGCTTCGACGACGGCTACCTGGAGGTGGTGGCC
ATCTCCGGCGTCTTGCATCTGGGGAGAATACGGGTGGGCCTCGATAGGCC
TGTGCGGCTGGCGCAGGCCAAGGAGGTCAGAATCCGAACCAAGAGCTTCT
TGCCAGGGCAGGTACGGAGGGAGGGAGGGAGGGAGGGAGGGGGTTGGTGC
GTGTGCTCATGTTTATTTATCGGCATGCCGTCCCTCACATATCGCCCCTC
CCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCAGGTCGACGGCGAGCCAT
GGCGGCTTCCCCGGTGCGAGCTGACGCTGCGTCTCAATGGACAGGCACCT
GTCCTACAGCACCTGAGCAAGGAACTGCTGCAGGTAGGAGGGGAGGGAGA
GAGAAGGGGAGAGTGTGCACTGGTTCTATTTTCTCCTAAGAAATCACATC
TCCAGGTATTATCACCTCACTGCCCCCTCCCTCTCTCTCCTTCCCCGCCT
CCCTCCCTCCATCCCTCTCTCAGTACAACGAGTGGCTGGTGGGTCAAGGT
AAGCTGGACGCGGCCGCCAAGGACCAGCTCCTTCAAGCCTTCAAGCGCCG
TTTGCAGGTGTCGCAGTGAAGAGAAGAGGGAGGGAGAGAGGAGAGGCGGG
CGAATGTGGGTAAATGTCAGTGTGGCAAGGCCGAGGAGAGGAGGGAAAGG
GAGAGAAGAAAGGACGGAGTGTGTGTATGTACAGGTATAGAAAGTGAAAG
CAAAAGCAAAACAAGAGCAGACGGGGTAACAGAGCAACAAAAGCAGCAGC
ATCGACATGGATAAAGAAGAGGAGAAAGGAACCGGGAAAAGCAAGCCGAA
AGTCGATTAAATTTGATTGAACAAAGAAGGAGAAAAGCATCATCTCACTG
AAGGAGCCGCGGAAAGAGAGAAAGAAAAAAAGAAAATTGGGCTTGCGAGC
ACACAGCAATGCCACATACACACAACACTCGCTTGCACTACTCAAGGGGT
TGTGGACGGAGAAAAAGGAGTGAGGAAGGGCTTGTGGAGGCCGCACAACT
TGAGCACACGCTACGCCACAGCTAATGCACGACCACACGCATGCACAACC
TTTGTGTTTGTAAAATGAAGGGGGAAAATTGGAAATAAGCCCTATCCCTA
AACTGACCCACGTCTATATTTTGCATGCCTGCAAAAAAAAACACGCTTAT
ACGACTCTCTGTTCGATGTCAGAAATCGGTATGAGAAGTCAAATATGGCC
AGCGCCGGAACGCTATCTTTACTATGCTGGTGTTGACTGTCAGCAGTGAC
GGGCATAAGCGAGGATGAACCGCTTCCATTAATCACCGCTTGTATCATTC
ACGCTATACCTGAGTGCAGTGAGTAAGATCGTAAATGAATTCAAAAGACT
TACGGGAGCACCCTCCCGCAAAGAGAATATCGCAGTAGAGACGGGAGGTT
GAATATCGCACTTTGTCGACCACTTTACCCATCGCTTTTTAGATTTGCTC
GAGGTTTGTGGGTGACGAAACATGCAAAGGTATTAGGCTGTCTACCAACA
TACCTTTGGACCGTTAAAAAAAAAATGCTTTTCGGCGACGAGCATGGCCC
TCCAACTTCACTGCTGTCACATAGCATCTCACACTGCAACAGCTCACACA
CAGCATCACTTCAGCACCGCCGTGCATGCACCTAAACCTCGGCGTTTCCC
TTATTTTTATCGTAATTGCCACCGCTGCTGCGTTTTTGTCGTCTGCCACC
AGTAGCTCCAATAGCATGAGCGAGACCTGTTCCCGGGACGCTCACAAGCA
TTGCGTCCCATGCGAAGGCGGCCTCCCCGCCGTACCGCTTGAGCGCGTGC
AGGCTGTCCTTCCCTCTCTGCCCTTGTGGAAGGCAAGCGACGACCACAAG
CGCCTGTCCCGTGCGTTCATCGCCAAGAACTTCGCTGCCGCACTTGCTTT
CCTTAACGCTGTGGGGGCCGTGGCCGAAGCGGAAGGCCACCACCCGGACT
TACACTTGACGAGCTATAGGGAGGTGGAAATTGTGTTGTACACGCATGCC
GTGGGAGGACTGACGGAGAATGATTTGATTATGGCGGGGTTGATCGACGC
AGTTCCTGCAGTGTATAGCCCCAAATGGTTGAAGGAGCATCCGGAGGCAG
AAAGCACGGCGGCTAAGTAAGGAGGGTTGGGGTGGAGTGGAAAAAGAGGG
GGGGGGGGAGGAGAAAGAAGCATGTAAAGAGATCGTACGGAGGAAGAGGG
TCAGGAAAGGAAGACAAAGAAGAGACGCAAGCAGTCAAAGTTGTAAGACA
GAGAGAAAGGAGCAGGAATGACTGGTGGAATGAAGTAACCAATGGAATCC
CAAGACCAGTGAAAATTATGACGCCAGCAAACTTGATACTCAACATTTGT
ACCATTTGATCTACATTGTCTTTACACTGCTAAACACCCTCTCGAGCCGT
GCCGTCCACCGCCGTTTTAGTGTCATGGTGGTGGTGGTGGTGGTAACGCG
CGTTATACTCTTGGCTCCCATGCGACTGCTGGAACACAGCTGGCCCTAGT
CCTGCCACTACCCTCTCCTGAAACGACGGCACCCTCACACGCATGTCCCA
TTCCCCCTCCTTCATCCCCTCTTCCTCCTCCTCAGCCGTCACCTCTTCTC
TCCCTTCTGCCATGCTCCTTTTCTCCAGATCCAAGACTGGTTCCTGATAG
AGAT

Coding sequence (CDS) from alignment at scaffold_69:40845..43548+

>mRNA_10813 ID=mRNA_10813|Name=jgi.p|Nanoce1779_2|612955|organism=Nannochloropsis oceanica|type=CDS|length=495bp|location=Sequence derived from alignment at scaffold_69:40845..43548+ (Nannochloropsis oceanica)
ATGCACCTAAACCTCGGCGTTTCCCTTATTTTTATCGTAATTGCCACCGC
TGCTGCGTTTTTGTCGTCTGCCACCAGTAGCTCCAATAGCATGAGCGAGA
CCTGTTCCCGGGACGCTCACAAGCATTGCGTCCCATGCGAAGGCGGCCTC
CCCGCCGTACCGCTTGAGCGCGTGCAGGCTGTCCTTCCCTCTCTGCCCTT
GTGGAAGGCAAGCGACGACCACAAGCGCCTGTCCCGTGCGTTCATCGCCA
AGAACTTCGCTGCCGCACTTGCTTTCCTTAACGCTGTGGGGGCCGTGGCC
GAAGCGGAAGGCCACCACCCGGACTTACACTTGACGAGCTATAGGGAGGT
GGAAATTGTGTTGTACACGCATGCCGTGGGAGGACTGACGGAGAATGATT
TGATTATGGCGGGGTTGATCGACGCAGTTCCTGCAGTGTATAGCCCCAAA
TGGTTGAAGGAGCATCCGGAGGCAGAAAGCACGGCGGCTAAGTAA

Synonyms

Publications