jgi.p|Nanoce1779_2|612943, mRNA_10810 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|612943
Unique NamemRNA_10810
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1267
Alignment locationscaffold_69:28835..30101 +

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Properties
Property NameValue
TranscriptId613029
TrackFilteredModels2
ProteinId612943
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_69supercontigscaffold_69:28835..30101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612943gene_10810Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612943mRNA_10810-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10810CDS_10810Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10810 ID=mRNA_10810|Name=jgi.p|Nanoce1779_2|612943|organism=Nannochloropsis oceanica|type=mRNA|length=1267bp
TTTAAGTACATCTTATTGATTGCTTTGATTTCTACTTTTGGTTTTTAAAA
TGTCGTCCATTCATGCGTCTCGCTGGTTGGACTTACTCGCTTATGCTTAC
CCTCGCCTCTCTTCTTGATCTACCCCTCTGTCTATGAGAGTTTTTCATTT
GATGGATGGCCTCCGTCCATGCCCTTCCTTCACTTTTCCTGACACCTCAT
ACGGACTGCCGGTGTTCCGGGTCATTAGGCCTGCTACTGCCTTTCTCCAC
CCATCCCTGCCTCCTCCACGGCCTGTGGGATCACAATCAGAGTCGCCATA
CTCACATGAAGGATCGTCGCAAGGACGTGAGAGCCCGCGTGGCAAACATC
TCGACGCGTCTGGCATTTGTGTTCGTAGCTCTTTGCCGCGAAATAGAGAC
CGACTGCAGCCAGCAACGTTGTGTAGCACCCACCCGAGGCCATCAAGGCA
CTACTACGATTACTACAACGACGGGAAAATCTGCCGTCGGTGGTGGTGGC
GGCGGCGAGGATGAAAGCATCAAGGCCTACGCAGGCGGCGATGGTGCAAC
GATCAAACCACTTGGCAAGGAGGCTTGTGGTAGCATGGTTCCACACGGAA
GTGACGATGCCGCCGAGAATAATGCAGGCCCAGGTGGTGGTAGCCGTGAA
CGTATCAAAAGAAATCAGAGCCCAGAGGTGGAGCGCGCCGCAGCAGAGGG
TCGAGGCGAGGAGGACACCGTTGGCCATGCACCTGTGTAGGATGTGCGGG
TGTGCGGAGAAAAATGGTGTGTCAGGCTGGCTCAAGTGCAGGGATACAGC
ACAAGGAGTGGAAACTTCATGACGAGCTAGCTAGTGTCTTTAAGTATGTA
TGGCATGCGTGGCGAGGTATGGATCTCGCCTACGAGGCGGTGATAGTCCA
TGGAACGGAACAGCGGCGATAAGTGGCACTGTGCAATGAAACGTGAGTGC
CGAGCGCTCCGATCAGAAAGTTACATCGATGCCGAGACGCGCTGGAACTT
TCTAGGGCGGTGGGCACGGTAATGGGCCTCATGGAGGTGACCAGACCAGC
CAACAACCGATTTAGCGAGAGAGCTTCTGTTTCTGTGATGTTGTGTGGTA
ATATTTGTAAGCCTTGGTTGTGCAGGCTGCATCATAAGTATAGTGTGGAT
AGGTGGATGCGTGGTTCTAGATGTCAGAGGTCAAAGGAAAAATGTGCCCA
AGTCCAAGAACAGTACACACTTGCAATCGAAATCCAGATCACACTTTCGT
TCTGGCCGCGTGGTAAT
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protein sequence of jgi.p|Nanoce1779_2|612943

>mRNA_10810-protein ID=mRNA_10810-protein|Name=jgi.p|Nanoce1779_2|612943|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MASVHALPSLFLTPHTDCRCSGSLGLLLPFSTHPCLLHGLWDHNQSRHTH
MKDRRKDVRARVANISTRLAFVFVALCREIETDCSQQRCVAPTRGHQGTT
TITTTTGKSAVGGGGGGEDESIKAYAGGDGATIKPLGKEACGSMVPHGSD
DAAENNAGPGGGSRERIKRNQSPEVERAAAEGRGEEDTVGHAPV*
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mRNA from alignment at scaffold_69:28835..30101+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10810 ID=mRNA_10810|Name=jgi.p|Nanoce1779_2|612943|organism=Nannochloropsis oceanica|type=mRNA|length=1267bp|location=Sequence derived from alignment at scaffold_69:28835..30101+ (Nannochloropsis oceanica)
TTTAAGTACATCTTATTGATTGCTTTGATTTCTACTTTTGGTTTTTAAAA
TGTCGTCCATTCATGCGTCTCGCTGGTTGGACTTACTCGCTTATGCTTAC
CCTCGCCTCTCTTCTTGATCTACCCCTCTGTCTATGAGAGTTTTTCATTT
GATGGATGGCCTCCGTCCATGCCCTTCCTTCACTTTTCCTGACACCTCAT
ACGGACTGCCGGTGTTCCGGGTCATTAGGCCTGCTACTGCCTTTCTCCAC
CCATCCCTGCCTCCTCCACGGCCTGTGGGATCACAATCAGAGTCGCCATA
CTCACATGAAGGATCGTCGCAAGGACGTGAGAGCCCGCGTGGCAAACATC
TCGACGCGTCTGGCATTTGTGTTCGTAGCTCTTTGCCGCGAAATAGAGAC
CGACTGCAGCCAGCAACGTTGTGTAGCACCCACCCGAGGCCATCAAGGCA
CTACTACGATTACTACAACGACGGGAAAATCTGCCGTCGGTGGTGGTGGC
GGCGGCGAGGATGAAAGCATCAAGGCCTACGCAGGCGGCGATGGTGCAAC
GATCAAACCACTTGGCAAGGAGGCTTGTGGTAGCATGGTTCCACACGGAA
GTGACGATGCCGCCGAGAATAATGCAGGCCCAGGTGGTGGTAGCCGTGAA
CGTATCAAAAGAAATCAGAGCCCAGAGGTGGAGCGCGCCGCAGCAGAGGG
TCGAGGCGAGGAGGACACCGTTGGCCATGCACCTGTGTAGGATGTGCGGG
TGTGCGGAGAAAAATGGTGTGTCAGGCTGGCTCAAGTGCAGGGATACAGC
ACAAGGAGTGGAAACTTCATGACGAGCTAGCTAGTGTCTTTAAGTATGTA
TGGCATGCGTGGCGAGGTATGGATCTCGCCTACGAGGCGGTGATAGTCCA
TGGAACGGAACAGCGGCGATAAGTGGCACTGTGCAATGAAACGTGAGTGC
CGAGCGCTCCGATCAGAAAGTTACATCGATGCCGAGACGCGCTGGAACTT
TCTAGGGCGGTGGGCACGGTAATGGGCCTCATGGAGGTGACCAGACCAGC
CAACAACCGATTTAGCGAGAGAGCTTCTGTTTCTGTGATGTTGTGTGGTA
ATATTTGTAAGCCTTGGTTGTGCAGGCTGCATCATAAGTATAGTGTGGAT
AGGTGGATGCGTGGTTCTAGATGTCAGAGGTCAAAGGAAAAATGTGCCCA
AGTCCAAGAACAGTACACACTTGCAATCGAAATCCAGATCACACTTTCGT
TCTGGCCGCGTGGTAAT
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Coding sequence (CDS) from alignment at scaffold_69:28835..30101+

>mRNA_10810 ID=mRNA_10810|Name=jgi.p|Nanoce1779_2|612943|organism=Nannochloropsis oceanica|type=CDS|length=585bp|location=Sequence derived from alignment at scaffold_69:28835..30101+ (Nannochloropsis oceanica)
ATGGCCTCCGTCCATGCCCTTCCTTCACTTTTCCTGACACCTCATACGGA
CTGCCGGTGTTCCGGGTCATTAGGCCTGCTACTGCCTTTCTCCACCCATC
CCTGCCTCCTCCACGGCCTGTGGGATCACAATCAGAGTCGCCATACTCAC
ATGAAGGATCGTCGCAAGGACGTGAGAGCCCGCGTGGCAAACATCTCGAC
GCGTCTGGCATTTGTGTTCGTAGCTCTTTGCCGCGAAATAGAGACCGACT
GCAGCCAGCAACGTTGTGTAGCACCCACCCGAGGCCATCAAGGCACTACT
ACGATTACTACAACGACGGGAAAATCTGCCGTCGGTGGTGGTGGCGGCGG
CGAGGATGAAAGCATCAAGGCCTACGCAGGCGGCGATGGTGCAACGATCA
AACCACTTGGCAAGGAGGCTTGTGGTAGCATGGTTCCACACGGAAGTGAC
GATGCCGCCGAGAATAATGCAGGCCCAGGTGGTGGTAGCCGTGAACGTAT
CAAAAGAAATCAGAGCCCAGAGGTGGAGCGCGCCGCAGCAGAGGGTCGAG
GCGAGGAGGACACCGTTGGCCATGCACCTGTGTAG
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Synonyms
Publications