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Properties
| Property Name | Value |
|---|
| TranscriptId | 387363 |
| Track | FilteredModels2 |
| ProteinId | 387277 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_69 | supercontig | scaffold_69:26078..27956 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10809 ID=mRNA_10809|Name=jgi.p|Nanoce1779_2|387277|organism=Nannochloropsis oceanica|type=mRNA|length=1399bp
TTCGAGAGACCACCAAGCATCCACACCGCATTCACAGAGGCCTCATGACC
TCGTTTCGCATGCCTTTCCTCCCTCATGGTCCAAACACAGGCACTGGCGG
GGCGCACCAACGATTTCCCAAAACTCCACATCCTCCAGCCAGTCGTCATC
CATAAATCATGCCTTGCCTCCTGCCCGCTCACCTCCTGCCGGCACTCCTT
CTCCTTAGCACTGTCGCCGACGCCACCCTCCAAATGTCCGTGCTCTCCCC
CGGGACACCTCAAGCTTGCCTTCAAGTACACTTCGAGCCGGGCAAGGATG
ACCACTCGTCGTTACACATCGACTTGCGTGCGCTTGTGAGCCGCTCAGGC
ACCTTGTCCCTCACCCCCTCCTCCTCATCCTCCTCTACTTCTTCTTCCTC
CTCATTGTCATCTCAGCCAGCATGGCGGCCAGGGCAACCACCACCACAGC
AGCAACATCAGCAAATATTTTCTTCATATCCTTCTTCCCTTCAACCCTCC
CTCGCCCGTCTCTCTCTCTCCCAACGTGGCGGCAAAGGCGGGCATTCCTC
CTTGTCTCCTTCACCCGTACCGGCCCTGGTGGTGGTGCGGGGCGCGTCCG
TCCTCGCCCGCGAAGGTGGGGTGGTTGTAGGAGAGGTAGCAGATAAGGGT
CTTCTCAAGACGCTTGAAACCGTGACTCGAGAACGAGAGAAGGAACGAGC
ACGCGCTGGAGGCCATCAGTTCTCACAGCAGCAACACCAAGGTCAGCCGT
TGCTGCAGAGATATTCGGGGAATGGAAATCTGGCGCTCTCCGCCTTCGGC
TCCATCATCCGCGTGGATCTGCGGGAAGGAGACGAGCGGGTGGTGAAGGC
GGGTCATGTCTTGGCGTGGACGGAGGCCACTCGGGTCAGCTTCGGCGCCA
GTTCAGCCTCCTCCTCCCTCTCCTCCTCCTCCCCCTCCCCCTCCTCCCCC
TCCCCCTCCTCCTCCTCCTCCAACGGCGTTTACACTTTAACAGGCCCTGG
TGTCATCTACCTTCGTTCTCACTCGCCCTCTGCCTTCCGCAAGTGGGCCT
CAGCCGGTGCGGCTATCCTCAAAGCTGATGCCAGCAGCATGATCCCCTCT
TCTCTCCCTCCCTCGTCCTCGGCCCCCTCCTCCTCAGTATCGGCGTATAA
AGGCGGAAGGGACGGAGGGGAGGCAGCAGCAGCCCTACTTGGCAGTGAGG
GTTTGGGGAAGCGGTTGAAGAAAAGGATAGGAAGGTGAGAGAGGGACGGA
GGGAGGCAAAGAGGGACGGAGGAAAGCAGGAAGGGTAGGGGGGAGGTTGA
TGGCTTGGAACACTGACCGGGACGCACCAACCATTTTCTCCCTCCGTCTC
TCTCTCCCCTCCCCCTCCTTTGTCCAGCTTGATGGTCACCTGTCTGTCC back to topprotein sequence of jgi.p|Nanoce1779_2|387277 >mRNA_10809-protein ID=mRNA_10809-protein|Name=jgi.p|Nanoce1779_2|387277|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MPCLLPAHLLPALLLLSTVADATLQMSVLSPGTPQACLQVHFEPGKDDHS
SLHIDLRALVSRSGTLSLTPSSSSSSTSSSSSLSSQPAWRPGQPPPQQQH
QQIFSSYPSSLQPSLARLSLSQRGGKGGHSSLSPSPVPALVVVRGASVLA
REGGVVVGEVADKGLLKTLETVTREREKERARAGGHQFSQQQHQGQPLLQ
RYSGNGNLALSAFGSIIRVDLREGDERVVKAGHVLAWTEATRVSFGASSA
SSSLSSSSPSPSSPSPSSSSSNGVYTLTGPGVIYLRSHSPSAFRKWASAG
AAILKADASSMIPSSLPPSSSAPSSSVSAYKGGRDGGEAAAALLGSEGLG
KRLKKRIGR* back to topmRNA from alignment at scaffold_69:26078..27956+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10809 ID=mRNA_10809|Name=jgi.p|Nanoce1779_2|387277|organism=Nannochloropsis oceanica|type=mRNA|length=1879bp|location=Sequence derived from alignment at scaffold_69:26078..27956+ (Nannochloropsis oceanica)
TTCGAGAGACCACCAAGCATCCACACCGCATTCACAGAGGCCTCATGACC
TCGTTTCGCATGCCTTTCCTCCCTCATGGTCCAAACACAGGCACTGGCGG
GGCGCACCAACGATTTCCCAAAACTCCACATCCTCCAGCCAGTCGTCATC
CATAAATCATGCCTTGCCTCCTGCCCGCTCACCTCCTGCCGGCACTCCTT
CTCCTTAGCACTGTCGCCGACGCCACCCTCCAAATGTCCGTGCTCTCCCC
CGGGACACCTCAAGCTTGCCTTCAAGTACACTTCGAGCCGGGCAAGGATG
ACCACTCGTCGTTACACATCGACTTGCGTGCGCTTGTGAGCCGCTCAGGC
ACCTTGTCCCTCACCCCCTCCTCCTCATCCTCCTCTACTTCTTCTTCCTC
CTCATTGTCATCTCAGCCAGCATGGCGGCCAGGGCAACCACCACCACAGC
AGCAACATCAGCAAATATTTTCTTCATATCCTTCTTCCCTTCAACCCTCC
CTCGCCCGTCTCTCTCTCTCCCAACGTGGCGGCAAAGGCGGGCATGTCAT
CCTCGCGCCCGAGGCCCCAGGGGACGTAATTGTCTGCCACTTTTCCTCCT
CCTCCTCCTCTTCTTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTTG
TCTCCTTCACCCGTACCGGCCCTGGTGGTGGTGCGGGGCGCGTCCGTCCT
CGCCCGCGAAGGTGGGGTGGTTGTAGGAGAGGTAGCAGATAAGGGTCTTC
TCAAGACGCTTGAAACCGTGACTCGAGAACGAGAGAAGGAACGAGCACGC
GCTGGAGGCCATCAGTTCTCACAGCAGCAACACCAAGGTCAGCCGTTGCT
GCAGAGATATTCGGGGAATGGTACGGCAAGGGGGAGGAAGGGAGGGAGGG
AGGGAGGGAGGAAGAAAGAGAGAATTGCGAGCTTGCTTGTCCTAGGTCAC
TCACATTCCTGGTATCGTCTTCTTTGTGCTCCAACTGGAGTGTACAAGTG
CCCACGACGTAAATTGCCGTCGCTGTGACTTGACACAACTCTTCCGCATT
CCTCATCCACTCCTCCCTCCCTCCCTCCCTCCTTCCGTCCCTCCCCAAAT
CCTTCCACAGGAAATCTGGCGCTCTCCGCCTTCGGCTCCATCATCCGCGT
GGATCTGCGGGAAGGAGACGAGCGGGTGGTGAAGGCGGGTCATGTCTTGG
CGTGGACGGAGGCCACTCGGGTCAGCTTCGGTCGGTCGGACGGGAGGGAG
GGAGGGAGAGAGGGAGGGAAGGAGGGAGGGGATGAGAAAGGGGAGCCGAC
GCGTCATAGAAGGCCATAATCCGCCATTTTTTTTTCACTGAAATATTCCC
TGTTATTTTTCTACACATCTACAGGCGCCAGTTCAGCCTCCTCCTCCCTC
TCCTCCTCCTCCCCCTCCCCCTCCTCCCCCTCCCCCTCCTCCTCCTCCTC
CAACGGCGTTTACACTTTAACAGGCCCTGGTGTCATCTACCTTCGTTCTC
ACTCGCCCTCTGCCTTCCGCAAGTGGGCCTCAGCCGGTGCGGCTATCCTC
AAAGCTGATGCCAGCAGCATGATCCCCTCTTCTCTCCCTCCCTCGTCCTC
GGCCCCCTCCTCCTCAGTATCGGCGTATAAAGGCGGAAGGGACGGAGGGG
AGGCAGCAGCAGCCCTACTTGGCAGTGAGGGTTTGGGGAAGCGGTTGAAG
AAAAGGATAGGAAGGTGAGAGAGGGACGGAGGGAGGCAAAGAGGGACGGA
GGAAAGCAGGAAGGGTAGGGGGGAGGTTGATGGCTTGGAACACTGACCGG
GACGCACCAACCATTTTCTCCCTCCGTCTCTCTCTCCCCTCCCCCTCCTT
TGTCCAGCTTGATGGTCACCTGTCTGTCC back to topCoding sequence (CDS) from alignment at scaffold_69:26078..27956+ >mRNA_10809 ID=mRNA_10809|Name=jgi.p|Nanoce1779_2|387277|organism=Nannochloropsis oceanica|type=CDS|length=4320bp|location=Sequence derived from alignment at scaffold_69:26078..27956+ (Nannochloropsis oceanica)
ATGCCTTGCCTCCTGCCCGCTCACCTCCTGCCGGCACTCCTTCTCCTTAG
CACTGTCGCCGACGCCACCCTCCAAATGTCCGTGCTCTCCCCCGGGACAC
CTCAAGCTTGCCTTCAAGTACACTTCGAGCCGGGCAAGGATGACCACTCG
TCGTTACACATCGACTTGCGTGCGCTTGTGAGCCGCTCAGGCACCTTGTC
CCTCACCCCCTCCTCCTCATCCTCCTCTACTTCTTCTTCCTCCTCATTGT
CATCTCAGCCAGCATGGCGGCCAGGGCAACCACCACCACAGCAGCAACAT
CAGCAAATATTTTCTTCATATCCTTCTTCCCTTCAACCCTCCCTCGCCCG
TCTCTCTCTCTCCCAACGTGGCGGCAAAGGCGGGCATTCCTCCTTGTCTC
CTTCACCCGTACCGGCCCTGGTGGTGGTGCGGGGCGCGTCCGTCCTCGCC
CGCGAAGGTGGGGTGGTTGTAGGAGAGGTAGCAGATAAGGGTCTTCTCAA
GACGCTTGAAACCGTGACTCGAGAACGAGAGAAGGAACGAGCACGCGCTG
GAGGCCATCAGTTCTCACAGCAGCAACACCAAGGTCAGCCGTTGCTGCAG
AGATATTCGGGGAATGGAAATCTGGCGCTCTCCGCCTTCGGCTCCATCAT
CCGCGTGGATCTGCGGGAAGGAGACGAGCGGGTGGTGAAGGCGGGTCATG
TCTTGGCGTGGACGGAGGCCACTCGGGTCAGCTTCGGCGCCAGTTCAGCC
TCCTCCTCCCTCTCCTCCTCCTCCCCCTCCCCCTCCTCCCCCTCCCCCTC
CTCCTCCTCCTCCAACGGCGTTTACACTTTAACAGGCCCTGGTGTCATCT
ACCTTCGTTCTCACTCGCCCTCTGCCTTCCGCAAGTGGGCCTCAGCCGGT
GCGGCTATCCTCAAAGCTGATGCCAGCAGCATGATCCCCTCTTCTCTCCC
TCCCTCGTCCTCGGCCCCCTCCTCCTCAGTATCGGCGTATAAAGGCGGAA
GGGACGGAGGGGAGGCAGCAGCAGCCCTACTTGGCAGTGAGGGTTTGGGG
AAGCGGTTGAAGAAAAGGATAGGAAGGTGAATGCCTTGCCTCCTGCCCGC
TCACCTCCTGCCGGCACTCCTTCTCCTTAGCACTGTCGCCGACGCCACCC
TCCAAATGTCCGTGCTCTCCCCCGGGACACCTCAAGCTTGCCTTCAAGTA
CACTTCGAGCCGGGCAAGGATGACCACTCGTCGTTACACATCGACTTGCG
TGCGCTTGTGAGCCGCTCAGGCACCTTGTCCCTCACCCCCTCCTCCTCAT
CCTCCTCTACTTCTTCTTCCTCCTCATTGTCATCTCAGCCAGCATGGCGG
CCAGGGCAACCACCACCACAGCAGCAACATCAGCAAATATTTTCTTCATA
TCCTTCTTCCCTTCAACCCTCCCTCGCCCGTCTCTCTCTCTCCCAACGTG
GCGGCAAAGGCGGGCATTCCTCCTTGTCTCCTTCACCCGTACCGGCCCTG
GTGGTGGTGCGGGGCGCGTCCGTCCTCGCCCGCGAAGGTGGGGTGGTTGT
AGGAGAGGTAGCAGATAAGGGTCTTCTCAAGACGCTTGAAACCGTGACTC
GAGAACGAGAGAAGGAACGAGCACGCGCTGGAGGCCATCAGTTCTCACAG
CAGCAACACCAAGGTCAGCCGTTGCTGCAGAGATATTCGGGGAATGGAAA
TCTGGCGCTCTCCGCCTTCGGCTCCATCATCCGCGTGGATCTGCGGGAAG
GAGACGAGCGGGTGGTGAAGGCGGGTCATGTCTTGGCGTGGACGGAGGCC
ACTCGGGTCAGCTTCGGCGCCAGTTCAGCCTCCTCCTCCCTCTCCTCCTC
CTCCCCCTCCCCCTCCTCCCCCTCCCCCTCCTCCTCCTCCTCCAACGGCG
TTTACACTTTAACAGGCCCTGGTGTCATCTACCTTCGTTCTCACTCGCCC
TCTGCCTTCCGCAAGTGGGCCTCAGCCGGTGCGGCTATCCTCAAAGCTGA
TGCCAGCAGCATGATCCCCTCTTCTCTCCCTCCCTCGTCCTCGGCCCCCT
CCTCCTCAGTATCGGCGTATAAAGGCGGAAGGGACGGAGGGGAGGCAGCA
GCAGCCCTACTTGGCAGTGAGGGTTTGGGGAAGCGGTTGAAGAAAAGGAT
AGGAAGGTGAATGCCTTGCCTCCTGCCCGCTCACCTCCTGCCGGCACTCC
TTCTCCTTAGCACTGTCGCCGACGCCACCCTCCAAATGTCCGTGCTCTCC
CCCGGGACACCTCAAGCTTGCCTTCAAGTACACTTCGAGCCGGGCAAGGA
TGACCACTCGTCGTTACACATCGACTTGCGTGCGCTTGTGAGCCGCTCAG
GCACCTTGTCCCTCACCCCCTCCTCCTCATCCTCCTCTACTTCTTCTTCC
TCCTCATTGTCATCTCAGCCAGCATGGCGGCCAGGGCAACCACCACCACA
GCAGCAACATCAGCAAATATTTTCTTCATATCCTTCTTCCCTTCAACCCT
CCCTCGCCCGTCTCTCTCTCTCCCAACGTGGCGGCAAAGGCGGGCATTCC
TCCTTGTCTCCTTCACCCGTACCGGCCCTGGTGGTGGTGCGGGGCGCGTC
CGTCCTCGCCCGCGAAGGTGGGGTGGTTGTAGGAGAGGTAGCAGATAAGG
GTCTTCTCAAGACGCTTGAAACCGTGACTCGAGAACGAGAGAAGGAACGA
GCACGCGCTGGAGGCCATCAGTTCTCACAGCAGCAACACCAAGGTCAGCC
GTTGCTGCAGAGATATTCGGGGAATGGAAATCTGGCGCTCTCCGCCTTCG
GCTCCATCATCCGCGTGGATCTGCGGGAAGGAGACGAGCGGGTGGTGAAG
GCGGGTCATGTCTTGGCGTGGACGGAGGCCACTCGGGTCAGCTTCGGCGC
CAGTTCAGCCTCCTCCTCCCTCTCCTCCTCCTCCCCCTCCCCCTCCTCCC
CCTCCCCCTCCTCCTCCTCCTCCAACGGCGTTTACACTTTAACAGGCCCT
GGTGTCATCTACCTTCGTTCTCACTCGCCCTCTGCCTTCCGCAAGTGGGC
CTCAGCCGGTGCGGCTATCCTCAAAGCTGATGCCAGCAGCATGATCCCCT
CTTCTCTCCCTCCCTCGTCCTCGGCCCCCTCCTCCTCAGTATCGGCGTAT
AAAGGCGGAAGGGACGGAGGGGAGGCAGCAGCAGCCCTACTTGGCAGTGA
GGGTTTGGGGAAGCGGTTGAAGAAAAGGATAGGAAGGTGAATGCCTTGCC
TCCTGCCCGCTCACCTCCTGCCGGCACTCCTTCTCCTTAGCACTGTCGCC
GACGCCACCCTCCAAATGTCCGTGCTCTCCCCCGGGACACCTCAAGCTTG
CCTTCAAGTACACTTCGAGCCGGGCAAGGATGACCACTCGTCGTTACACA
TCGACTTGCGTGCGCTTGTGAGCCGCTCAGGCACCTTGTCCCTCACCCCC
TCCTCCTCATCCTCCTCTACTTCTTCTTCCTCCTCATTGTCATCTCAGCC
AGCATGGCGGCCAGGGCAACCACCACCACAGCAGCAACATCAGCAAATAT
TTTCTTCATATCCTTCTTCCCTTCAACCCTCCCTCGCCCGTCTCTCTCTC
TCCCAACGTGGCGGCAAAGGCGGGCATTCCTCCTTGTCTCCTTCACCCGT
ACCGGCCCTGGTGGTGGTGCGGGGCGCGTCCGTCCTCGCCCGCGAAGGTG
GGGTGGTTGTAGGAGAGGTAGCAGATAAGGGTCTTCTCAAGACGCTTGAA
ACCGTGACTCGAGAACGAGAGAAGGAACGAGCACGCGCTGGAGGCCATCA
GTTCTCACAGCAGCAACACCAAGGTCAGCCGTTGCTGCAGAGATATTCGG
GGAATGGAAATCTGGCGCTCTCCGCCTTCGGCTCCATCATCCGCGTGGAT
CTGCGGGAAGGAGACGAGCGGGTGGTGAAGGCGGGTCATGTCTTGGCGTG
GACGGAGGCCACTCGGGTCAGCTTCGGCGCCAGTTCAGCCTCCTCCTCCC
TCTCCTCCTCCTCCCCCTCCCCCTCCTCCCCCTCCCCCTCCTCCTCCTCC
TCCAACGGCGTTTACACTTTAACAGGCCCTGGTGTCATCTACCTTCGTTC
TCACTCGCCCTCTGCCTTCCGCAAGTGGGCCTCAGCCGGTGCGGCTATCC
TCAAAGCTGATGCCAGCAGCATGATCCCCTCTTCTCTCCCTCCCTCGTCC
TCGGCCCCCTCCTCCTCAGTATCGGCGTATAAAGGCGGAAGGGACGGAGG
GGAGGCAGCAGCAGCCCTACTTGGCAGTGAGGGTTTGGGGAAGCGGTTGA
AGAAAAGGATAGGAAGGTGA back to top
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