jgi.p|Nanoce1779_2|612923, mRNA_10806 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|612923
Unique NamemRNA_10806
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1349
Alignment locationscaffold_69:20104..21452 +

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Properties
Property NameValue
TranscriptId613009
TrackFilteredModels2
ProteinId612923
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_69supercontigscaffold_69:20104..21452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612923gene_10806Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612923mRNA_10806-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10806CDS_10806Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10806 ID=mRNA_10806|Name=jgi.p|Nanoce1779_2|612923|organism=Nannochloropsis oceanica|type=mRNA|length=1349bp
AGCTTAAAAGCCAACCAGCAACCCCACCGAGAGCATAAATCATGACCCGT
CTTGCCTTTATCACCGGTATTGCCCTTTGTTTTATTATTCCGGGCTTAGC
ACAAAATAAGCAAGCTGCGCAGCAGCAGAACGTGACCACTACGCCCCAGA
TGCAGCAGCAGCAGCAGAACGCAACCACCACGCCCTCGGGGCAGCAGCAT
CAGCAGCAAGAGCGCCAAAATGCCACCACACCCACGGTACACCAGCAGCA
GGAGCGTCAAAACACCACCACTGGCACCCAACAGCATGGGGAGCAGGAGG
AGCAGCGTCCGTCGGCTATGTCCCAGCTCGAGGTCCTCTTACTAGGCAAC
CACAGCTGGACAGACCCCAACAAGACTTATTCCTACTTTCAGAACGACTA
TCAGATTGTGAACCATTCCCCGCACGAGATTTGTAACGTCAGCCTTTCCA
CTCCCTTGGAAAATCCTGAGCGAACCTGGGTCTCGAGCAGCTACAATGCA
CACCTGACCAACTCCACCGGCAAGCGCGGGATCGATATTATTGCCCCTGC
TGATAACTCTACCTTTATTCCCGCGAACGGTATGCTCAATATCGGCTACA
TCCTTCAGCAGGCAGTGCAAAGCGGTCAAGGTAACATGAGCAACATGACG
ACAATGGCTAGCGGGCTCAGCCGAGATCCACCCACAGTTGAATCGGCCCA
GTACTGTGACGAGTTGAACCAGACCGATGCCACAACTGGCGGCATGACAG
GCGGCGCTGACAATACGACTACACGGGCCAACGTGACGACGCATGGTCAG
GAGGAGAGGAGCAACACCACGGTCGTGGGAGGTTCCCGTGCCAAGGCGAT
CAACGGAAAGAAGCGTAATTTCCGTCATGTGTAGATAAAGGTTTAGTTGG
GGAAAATGGGGTTTTATCGTGTTAGTTATGTAAGTCATGCTCCAAAATCG
CATATTTGTGTCGAGAGAAATACTAAGGGTCAGTTGATGCAGCAAGCAGA
CTAGCAAGGGGGGGTACGGGAACTTCGAAATTATCTTTTTGACATGTCTA
GTTTTTCCTCCCTACCTGTCTCTTTTTTTATGATTGTGGTGAGATTGTGA
GTAGATGAGGTGTTAGAAGGGAAAATAGAAGTTTTGGAGGGAAAGACCAA
GCTAAGGCATTAGTCACAGACGAAAAAAGATTATTAGTAATCACTTACAA
ACGTCTGAAAGGATAGGAGAGATAAACGTTGTGGGAAAGACAAAGCATGG
GACAGCATGCGTGGAAGACAAACGTAGGATGGAATGCAAGGTGTGAGAGG
TGCAAACCTTGAACATCTAAAAGAATAAAATAAAATTACATGTGATTAC
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protein sequence of jgi.p|Nanoce1779_2|612923

>mRNA_10806-protein ID=mRNA_10806-protein|Name=jgi.p|Nanoce1779_2|612923|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MTRLAFITGIALCFIIPGLAQNKQAAQQQNVTTTPQMQQQQQNATTTPSG
QQHQQQERQNATTPTVHQQQERQNTTTGTQQHGEQEEQRPSAMSQLEVLL
LGNHSWTDPNKTYSYFQNDYQIVNHSPHEICNVSLSTPLENPERTWVSSS
YNAHLTNSTGKRGIDIIAPADNSTFIPANGMLNIGYILQQAVQSGQGNMS
NMTTMASGLSRDPPTVESAQYCDELNQTDATTGGMTGGADNTTTRANVTT
HGQEERSNTTVVGGSRAKAINGKKRNFRHV*
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mRNA from alignment at scaffold_69:20104..21452+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10806 ID=mRNA_10806|Name=jgi.p|Nanoce1779_2|612923|organism=Nannochloropsis oceanica|type=mRNA|length=1349bp|location=Sequence derived from alignment at scaffold_69:20104..21452+ (Nannochloropsis oceanica)
AGCTTAAAAGCCAACCAGCAACCCCACCGAGAGCATAAATCATGACCCGT
CTTGCCTTTATCACCGGTATTGCCCTTTGTTTTATTATTCCGGGCTTAGC
ACAAAATAAGCAAGCTGCGCAGCAGCAGAACGTGACCACTACGCCCCAGA
TGCAGCAGCAGCAGCAGAACGCAACCACCACGCCCTCGGGGCAGCAGCAT
CAGCAGCAAGAGCGCCAAAATGCCACCACACCCACGGTACACCAGCAGCA
GGAGCGTCAAAACACCACCACTGGCACCCAACAGCATGGGGAGCAGGAGG
AGCAGCGTCCGTCGGCTATGTCCCAGCTCGAGGTCCTCTTACTAGGCAAC
CACAGCTGGACAGACCCCAACAAGACTTATTCCTACTTTCAGAACGACTA
TCAGATTGTGAACCATTCCCCGCACGAGATTTGTAACGTCAGCCTTTCCA
CTCCCTTGGAAAATCCTGAGCGAACCTGGGTCTCGAGCAGCTACAATGCA
CACCTGACCAACTCCACCGGCAAGCGCGGGATCGATATTATTGCCCCTGC
TGATAACTCTACCTTTATTCCCGCGAACGGTATGCTCAATATCGGCTACA
TCCTTCAGCAGGCAGTGCAAAGCGGTCAAGGTAACATGAGCAACATGACG
ACAATGGCTAGCGGGCTCAGCCGAGATCCACCCACAGTTGAATCGGCCCA
GTACTGTGACGAGTTGAACCAGACCGATGCCACAACTGGCGGCATGACAG
GCGGCGCTGACAATACGACTACACGGGCCAACGTGACGACGCATGGTCAG
GAGGAGAGGAGCAACACCACGGTCGTGGGAGGTTCCCGTGCCAAGGCGAT
CAACGGAAAGAAGCGTAATTTCCGTCATGTGTAGATAAAGGTTTAGTTGG
GGAAAATGGGGTTTTATCGTGTTAGTTATGTAAGTCATGCTCCAAAATCG
CATATTTGTGTCGAGAGAAATACTAAGGGTCAGTTGATGCAGCAAGCAGA
CTAGCAAGGGGGGGTACGGGAACTTCGAAATTATCTTTTTGACATGTCTA
GTTTTTCCTCCCTACCTGTCTCTTTTTTTATGATTGTGGTGAGATTGTGA
GTAGATGAGGTGTTAGAAGGGAAAATAGAAGTTTTGGAGGGAAAGACCAA
GCTAAGGCATTAGTCACAGACGAAAAAAGATTATTAGTAATCACTTACAA
ACGTCTGAAAGGATAGGAGAGATAAACGTTGTGGGAAAGACAAAGCATGG
GACAGCATGCGTGGAAGACAAACGTAGGATGGAATGCAAGGTGTGAGAGG
TGCAAACCTTGAACATCTAAAAGAATAAAATAAAATTACATGTGATTAC
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Coding sequence (CDS) from alignment at scaffold_69:20104..21452+

>mRNA_10806 ID=mRNA_10806|Name=jgi.p|Nanoce1779_2|612923|organism=Nannochloropsis oceanica|type=CDS|length=843bp|location=Sequence derived from alignment at scaffold_69:20104..21452+ (Nannochloropsis oceanica)
ATGACCCGTCTTGCCTTTATCACCGGTATTGCCCTTTGTTTTATTATTCC
GGGCTTAGCACAAAATAAGCAAGCTGCGCAGCAGCAGAACGTGACCACTA
CGCCCCAGATGCAGCAGCAGCAGCAGAACGCAACCACCACGCCCTCGGGG
CAGCAGCATCAGCAGCAAGAGCGCCAAAATGCCACCACACCCACGGTACA
CCAGCAGCAGGAGCGTCAAAACACCACCACTGGCACCCAACAGCATGGGG
AGCAGGAGGAGCAGCGTCCGTCGGCTATGTCCCAGCTCGAGGTCCTCTTA
CTAGGCAACCACAGCTGGACAGACCCCAACAAGACTTATTCCTACTTTCA
GAACGACTATCAGATTGTGAACCATTCCCCGCACGAGATTTGTAACGTCA
GCCTTTCCACTCCCTTGGAAAATCCTGAGCGAACCTGGGTCTCGAGCAGC
TACAATGCACACCTGACCAACTCCACCGGCAAGCGCGGGATCGATATTAT
TGCCCCTGCTGATAACTCTACCTTTATTCCCGCGAACGGTATGCTCAATA
TCGGCTACATCCTTCAGCAGGCAGTGCAAAGCGGTCAAGGTAACATGAGC
AACATGACGACAATGGCTAGCGGGCTCAGCCGAGATCCACCCACAGTTGA
ATCGGCCCAGTACTGTGACGAGTTGAACCAGACCGATGCCACAACTGGCG
GCATGACAGGCGGCGCTGACAATACGACTACACGGGCCAACGTGACGACG
CATGGTCAGGAGGAGAGGAGCAACACCACGGTCGTGGGAGGTTCCCGTGC
CAAGGCGATCAACGGAAAGAAGCGTAATTTCCGTCATGTGTAG
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Synonyms
Publications