jgi.p|Nanoce1779_2|386916, mRNA_10802 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|386916
Unique Name	mRNA_10802
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1025
Alignment location	scaffold_69:938..2729 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	387002
Track	FilteredModels2
ProteinId	386916

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_69	supercontig	scaffold_69:938..2729 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|386916	gene_10802	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|386916	mRNA_10802-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10802	CDS_10802	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_69:938..2729+
coding sequence from alignment at scaffold_69:938..2729+

mRNA sequence

>mRNA_10802 ID=mRNA_10802|Name=jgi.p|Nanoce1779_2|386916|organism=Nannochloropsis oceanica|type=mRNA|length=1025bp
CCCAAGAGAGAGCGGTGTCGGGGTGTTCTCCAAGTTGACCCTGCCTTTGG
CTTGCCTCCTCGTCGGCGTAAGCTTTGTCTCACGATATGCTCGTTGTCAT
CCCCGTCCCACCCTATAGCCTCGTCGCTTTGAGTCGCTTACTTTGGCTCT
TAGCCCCACGCTTCGTCTCGCTCTAGCCGCTCCTCGTCCCGCCGGTCTAT
CATGCTTGCTGCAAGCATGTCCGCCCCTGTTCTCCTCCTCGTCCTCCTCG
TCCTCCTGGCCCTCAGCGGCACGCATGCTTTCTTCCTTCCAGTGCCCGCT
GTTTCTTCCTCGATGACGAGCACCACCCGGCTGCACGGTGGCATCAAGGG
CGTGGAGACGTTCGATGGTGCCTTTACCCTCTCGCCAGAGTCCGAAAGCG
TCCTATTTGACTTTTTGCAGTGCGATGACATGAAGAACGAGGTGTGCAAG
CAAGCCAAGTGCTCGGGCGCCCGATTCACGGGGCAGCTCTTCCAACCCGT
GCCTTATTCTCCCGGGACGCCCATCGGGATGCCCCGTGAATTCGAGGACT
TCCACCTCAATCCGTTCTATGCCATCTGCAATGTGCCTCCCACGGTCATG
TTCAAGGCCAAGATCTTCAAGCCCCCCCGCCTTTGCGCCGTCTTTGCCAT
TGAAGGCCTTGACCCTGAGGAAAAAGATAAGATAATGGAAAAGGCCAAGG
CCCGGATGGACCTACAGGCGCTTTCAGCCGCCCGCCTGGCCACGGAGAGG
GCGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGAGAGCAAGCTCCCTTT
TCTCAAGGGGCAGCCAGTGGAGGAGGACTGGAGCAAGGTAGGTGCGTCGT
TGAAGGAGTTGATGAGAGGGGATTGTGCGTTTATATTGTATGTTATAGGC
GTTTGAAATGGCTCTGGCAGGGGAAGGAGGGAGGGATGGTGGGTAAATGA
AACATGCGTGCAGGGCATCGGCGAGATTTAAATATACACGACACCGTGAG
GGGCATCAGGTGTCAAATAGATGAC

protein sequence of jgi.p|Nanoce1779_2|386916

>mRNA_10802-protein ID=mRNA_10802-protein|Name=jgi.p|Nanoce1779_2|386916|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MLAASMSAPVLLLVLLVLLALSGTHAFFLPVPAVSSSMTSTTRLHGGIKG
VETFDGAFTLSPESESVLFDFLQCDDMKNEVCKQAKCSGARFTGQLFQPV
PYSPGTPIGMPREFEDFHLNPFYAICNVPPTVMFKAKIFKPPRLCAVFAI
EGLDPEEKDKIMEKAKARMDLQALSAARLATERAKEGGKEGGKEESKLPF
LKGQPVEEDWSKVGASLKELMRGDCAFILYVIGV*

mRNA from alignment at scaffold_69:938..2729+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10802 ID=mRNA_10802|Name=jgi.p|Nanoce1779_2|386916|organism=Nannochloropsis oceanica|type=mRNA|length=1792bp|location=Sequence derived from alignment at scaffold_69:938..2729+ (Nannochloropsis oceanica)
CCCAAGAGAGAGCGGTGTCGGGGTGTTCTCCAAGTTGACCCTGCCTTTGG
CTTGCCTCCTCGTCGGCGTAAGCTTTGTCTCACGATATGCTCGTTGTCAT
CCCCGTCCCACCCTATAGCCTCGTCGCTTTGAGTCGCTTACTTTGGCTCT
TAGCCCCACGCTTCGTCTCGCTCTAGCCGCTCCTCGTCCCGCCGGTCTAT
CATGCTTGCTGCAAGCATGTCCGCCCCTGTTCTCCTCCTCGTCCTCCTCG
TCCTCCTGGCCCTCAGCGGCACGCATGCTTTCTTCCTTCCAGTGCCCGCT
GTTTCTTCCTCGATGACGAGCACCACCCGGCTGCACGGTGGCATCAAGGG
CGTGGAGACGTTCGATGGTGCCTTTACCCTCTCGCCAGAGTCCGAAAGCG
TCCTATTTGACTTTTTGCAGTGCGATGTAAGTGGTTGGGGAGGAGAACGG
AGGGGGGAGGGAGGGGGTGGGGGAGAGGGGAGGAGAGAGATGACGAAAAA
AAATGTTGCTCAGATGGATAAAGGTATCAGGTGGGAGGAGAGGACGGTCA
GGAGACAGGTGTGAAGGGGTGAAGCAGGACACGGTCGGTGCCCATGTCGC
TTGTCAATGAAAGGCTGTGGTCTCCAGCTCCTCCATTGTGCTTATTGTCT
TTCATTAAATCTCCCCTCTCTCTCTACCTCTCTTTCCACCAACTGTACCC
ACCTGCCCTCCTTTTTGCAGGACATGAAGAACGAGGTGTGCAAGCAAGCC
AAGTGCTCGGGCGCCCGATTCACGGGGCAGCTCTTCCAACCCGTGCCTTA
TTCTCCCGGGACGCCCATCGGTAGGGAGGAAGAGGAGGAGGACGGGAGGC
ATTGGGCCTGGAAGAGGAGATATGATCAGAGGATTGAGAAGATAAATTTG
AGAATTGAGAAGCAAGGATTCAAAGAGAGGGAGGCTTTGGTGTCGCCAAT
GGTCTTTCTCGCCTCTCAAATCCCTCTTCATGCCTTTCCCCCCCTCCCTG
CCTCCTCTTCCCAGGGATGCCCCGTGAATTCGAGGACTTCCACCTCAATC
CGTTCTATGCCATCTGCAATGTGCCTCCCACGGTCATGTTCAAGGCCAAG
ATCTTCAAGCCCCCCCGCCTTTGCGCCGTCTTTGCCATTGAAGGTAGTTA
AGGCTCACCGGCCCTCTCTCCCTCCCTCCCTCCCTCCCTCGCTCGCTTGA
ATTGTTTTCTCCATCGTCTGCACTGACAGGTCACAATGCACGCCACTCAA
CGGCCGCCCCTATTTTCCTCCCTCCCTCCCTCCCTTCCTCCCACCCCCCC
TCCCTCCCCTCCAGGCCTTGACCCTGAGGAAAAAGATAAGATAATGGAAA
AGGCCAAGGCCCGGATGGACCTACAGGCGCTTTCAGCCGCCCGCCTGGCC
ACGGAGAGGGCGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGAGAGCAA
GCTCCCTTTTCTCAAGGGGCAGCCAGTGGAGGAGGACTGGAGCAAGGTAG
GTGCGTCGTTGAAGGAGTTGATGAGCGAGGAGGAGAGGGAGGCGGCGGAG
GAGGCGGCGTTGGACGCTATGGTGGTTTAAGGCAGGAGGGGGGAGGGAAG
GAGGGAGGGAGGGAGGGTAGGGGGGGGGGGAGGAGGGGATTGTGCGTTTA
TATTGTATGTTATAGGCGTTTGAAATGGCTCTGGCAGGGGAAGGAGGGAG
GGATGGTGGGTAAATGAAACATGCGTGCAGGGCATCGGCGAGATTTAAAT
ATACACGACACCGTGAGGGGCATCAGGTGTCAAATAGATGAC

Coding sequence (CDS) from alignment at scaffold_69:938..2729+

>mRNA_10802 ID=mRNA_10802|Name=jgi.p|Nanoce1779_2|386916|organism=Nannochloropsis oceanica|type=CDS|length=3525bp|location=Sequence derived from alignment at scaffold_69:938..2729+ (Nannochloropsis oceanica)
ATGCTTGCTGCAAGCATGTCCGCCCCTGTTCTCCTCCTCGTCCTCCTCGT
CCTCCTGGCCCTCAGCGGCACGCATGCTTTCTTCCTTCCAGTGCCCGCTG
TTTCTTCCTCGATGACGAGCACCACCCGGCTGCACGGTGGCATCAAGGGC
GTGGAGACGTTCGATGGTGCCTTTACCCTCTCGCCAGAGTCCGAAAGCGT
CCTATTTGACTTTTTGCAGTGCGATGACATGAAGAACGAGGTGTGCAAGC
AAGCCAAGTGCTCGGGCGCCCGATTCACGGGGCAGCTCTTCCAACCCGTG
CCTTATTCTCCCGGGACGCCCATCGGGATGCCCCGTGAATTCGAGGACTT
CCACCTCAATCCGTTCTATGCCATCTGCAATGTGCCTCCCACGGTCATGT
TCAAGGCCAAGATCTTCAAGCCCCCCCGCCTTTGCGCCGTCTTTGCCATT
GAAGGCCTTGACCCTGAGGAAAAAGATAAGATAATGGAAAAGGCCAAGGC
CCGGATGGACCTACAGGCGCTTTCAGCCGCCCGCCTGGCCACGGAGAGGG
CGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGAGAGCAAGCTCCCTTTT
CTCAAGGGGCAGCCAGTGGAGGAGGACTGGAGCAAGGTAGGTGCGTCGTT
GAAGGAGTTGATGAGAGGGGATTGTGCGTTTATATTGTATGTTATAGGCG
TTTGAATGCTTGCTGCAAGCATGTCCGCCCCTGTTCTCCTCCTCGTCCTC
CTCGTCCTCCTGGCCCTCAGCGGCACGCATGCTTTCTTCCTTCCAGTGCC
CGCTGTTTCTTCCTCGATGACGAGCACCACCCGGCTGCACGGTGGCATCA
AGGGCGTGGAGACGTTCGATGGTGCCTTTACCCTCTCGCCAGAGTCCGAA
AGCGTCCTATTTGACTTTTTGCAGTGCGATGACATGAAGAACGAGGTGTG
CAAGCAAGCCAAGTGCTCGGGCGCCCGATTCACGGGGCAGCTCTTCCAAC
CCGTGCCTTATTCTCCCGGGACGCCCATCGGGATGCCCCGTGAATTCGAG
GACTTCCACCTCAATCCGTTCTATGCCATCTGCAATGTGCCTCCCACGGT
CATGTTCAAGGCCAAGATCTTCAAGCCCCCCCGCCTTTGCGCCGTCTTTG
CCATTGAAGGCCTTGACCCTGAGGAAAAAGATAAGATAATGGAAAAGGCC
AAGGCCCGGATGGACCTACAGGCGCTTTCAGCCGCCCGCCTGGCCACGGA
GAGGGCGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGAGAGCAAGCTCC
CTTTTCTCAAGGGGCAGCCAGTGGAGGAGGACTGGAGCAAGGTAGGTGCG
TCGTTGAAGGAGTTGATGAGAGGGGATTGTGCGTTTATATTGTATGTTAT
AGGCGTTTGAATGCTTGCTGCAAGCATGTCCGCCCCTGTTCTCCTCCTCG
TCCTCCTCGTCCTCCTGGCCCTCAGCGGCACGCATGCTTTCTTCCTTCCA
GTGCCCGCTGTTTCTTCCTCGATGACGAGCACCACCCGGCTGCACGGTGG
CATCAAGGGCGTGGAGACGTTCGATGGTGCCTTTACCCTCTCGCCAGAGT
CCGAAAGCGTCCTATTTGACTTTTTGCAGTGCGATGACATGAAGAACGAG
GTGTGCAAGCAAGCCAAGTGCTCGGGCGCCCGATTCACGGGGCAGCTCTT
CCAACCCGTGCCTTATTCTCCCGGGACGCCCATCGGGATGCCCCGTGAAT
TCGAGGACTTCCACCTCAATCCGTTCTATGCCATCTGCAATGTGCCTCCC
ACGGTCATGTTCAAGGCCAAGATCTTCAAGCCCCCCCGCCTTTGCGCCGT
CTTTGCCATTGAAGGCCTTGACCCTGAGGAAAAAGATAAGATAATGGAAA
AGGCCAAGGCCCGGATGGACCTACAGGCGCTTTCAGCCGCCCGCCTGGCC
ACGGAGAGGGCGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGAGAGCAA
GCTCCCTTTTCTCAAGGGGCAGCCAGTGGAGGAGGACTGGAGCAAGGTAG
GTGCGTCGTTGAAGGAGTTGATGAGAGGGGATTGTGCGTTTATATTGTAT
GTTATAGGCGTTTGAATGCTTGCTGCAAGCATGTCCGCCCCTGTTCTCCT
CCTCGTCCTCCTCGTCCTCCTGGCCCTCAGCGGCACGCATGCTTTCTTCC
TTCCAGTGCCCGCTGTTTCTTCCTCGATGACGAGCACCACCCGGCTGCAC
GGTGGCATCAAGGGCGTGGAGACGTTCGATGGTGCCTTTACCCTCTCGCC
AGAGTCCGAAAGCGTCCTATTTGACTTTTTGCAGTGCGATGACATGAAGA
ACGAGGTGTGCAAGCAAGCCAAGTGCTCGGGCGCCCGATTCACGGGGCAG
CTCTTCCAACCCGTGCCTTATTCTCCCGGGACGCCCATCGGGATGCCCCG
TGAATTCGAGGACTTCCACCTCAATCCGTTCTATGCCATCTGCAATGTGC
CTCCCACGGTCATGTTCAAGGCCAAGATCTTCAAGCCCCCCCGCCTTTGC
GCCGTCTTTGCCATTGAAGGCCTTGACCCTGAGGAAAAAGATAAGATAAT
GGAAAAGGCCAAGGCCCGGATGGACCTACAGGCGCTTTCAGCCGCCCGCC
TGGCCACGGAGAGGGCGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGAG
AGCAAGCTCCCTTTTCTCAAGGGGCAGCCAGTGGAGGAGGACTGGAGCAA
GGTAGGTGCGTCGTTGAAGGAGTTGATGAGAGGGGATTGTGCGTTTATAT
TGTATGTTATAGGCGTTTGAATGCTTGCTGCAAGCATGTCCGCCCCTGTT
CTCCTCCTCGTCCTCCTCGTCCTCCTGGCCCTCAGCGGCACGCATGCTTT
CTTCCTTCCAGTGCCCGCTGTTTCTTCCTCGATGACGAGCACCACCCGGC
TGCACGGTGGCATCAAGGGCGTGGAGACGTTCGATGGTGCCTTTACCCTC
TCGCCAGAGTCCGAAAGCGTCCTATTTGACTTTTTGCAGTGCGATGACAT
GAAGAACGAGGTGTGCAAGCAAGCCAAGTGCTCGGGCGCCCGATTCACGG
GGCAGCTCTTCCAACCCGTGCCTTATTCTCCCGGGACGCCCATCGGGATG
CCCCGTGAATTCGAGGACTTCCACCTCAATCCGTTCTATGCCATCTGCAA
TGTGCCTCCCACGGTCATGTTCAAGGCCAAGATCTTCAAGCCCCCCCGCC
TTTGCGCCGTCTTTGCCATTGAAGGCCTTGACCCTGAGGAAAAAGATAAG
ATAATGGAAAAGGCCAAGGCCCGGATGGACCTACAGGCGCTTTCAGCCGC
CCGCCTGGCCACGGAGAGGGCGAAGGAGGGAGGGAAGGAGGGAGGGAAGG
AGGAGAGCAAGCTCCCTTTTCTCAAGGGGCAGCCAGTGGAGGAGGACTGG
AGCAAGGTAGGTGCGTCGTTGAAGGAGTTGATGAGAGGGGATTGTGCGTT
TATATTGTATGTTATAGGCGTTTGA

Synonyms

Publications