jgi.p|Nanoce1779_2|611862, mRNA_10800 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611862
Unique NamemRNA_10800
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length671
Alignment locationscaffold_59:77085..80403 -

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Properties
Property NameValue
TranscriptId611948
TrackFilteredModels2
ProteinId611862
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_59supercontigscaffold_59:77085..80403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611862gene_10800Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611862mRNA_10800-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10800CDS_10800Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10800 ID=mRNA_10800|Name=jgi.p|Nanoce1779_2|611862|organism=Nannochloropsis oceanica|type=mRNA|length=671bp
CAACCTCCTCCCCCCGCCAGTTCCTCGGGCACCGACTGCCTCTCCATCTC
CGTGGATGCCGCTTGTCCTTCCTCCCTTCCCTTCTCGCTCCCTTCCTTCC
TCCCTTCCTCCCTCCCTTCCTCCCTCCCTTCCTCCCTCCCTCCCTCGCCC
ATCGTTCTGCGTTCGGCTTTGAGTGGCGAAGGCAGCATCGGGAGCTCCGA
ATGGCCTGCCGTTCCTCCTCCCTTAGAGGAGTTGAAGCAAGCAGCGAGGG
AGGGAGCATCGTTTGGGGAGGAGGAAAAAGGATCGCAGGATGGCAAGGCA
AGCAGTAGTGACCGGACCGTCGGCCACACGGCGGATCACAACCCTCAAAT
ATCTAGCCAGCATGCGTCCCAAGGCGGCTCCTACATCCTTCCTTCCTACC
TTAGACTTCTTTCTCCTCTGACACATCGCCTCCTCTACCACCCTGTCTCG
CCCTCCTCCTCATTCCCTCCCGCCCAGCCCTCCTTCTCCCTCCCTGTAAA
TTCTGTTCAAATTCCCAGCCGCGTCGCACGGGCGGAGGAGGGGCGAGGGA
GGGGGGGGTGGAGGGAGGGAGATGGAGGGGGGAAAGGGCGAGGGAGAGGC
TGAAAGGAGACTCGATGAGAAGAGACGGGAAGGGGAGGAAGGGAGGGAGG
AAGAGAGGGAGGGCGGCACAC
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protein sequence of jgi.p|Nanoce1779_2|611862

>mRNA_10800-protein ID=mRNA_10800-protein|Name=jgi.p|Nanoce1779_2|611862|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
SSSGTDCLSISVDAACPSSLPFSLPSFLPSSLPSSLPSSLPPSPIVLRSA
LSGEGSIGSSEWPAVPPPLEELKQAAREGASFGEEEKGSQDGKASSSDRT
VGHTADHNPQISSQHASQGGSYILPSYLRLLSPLTHRLLYHPVSPSSSFP
PAQPSFSLPVNSVQIPSRVARAEEGRGRGGWREGDGGGKGRGRG*
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mRNA from alignment at scaffold_59:77085..80403-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10800 ID=mRNA_10800|Name=jgi.p|Nanoce1779_2|611862|organism=Nannochloropsis oceanica|type=mRNA|length=3319bp|location=Sequence derived from alignment at scaffold_59:77085..80403- (Nannochloropsis oceanica)
CAACCTCCTCCCCCCGCCCTCCCTCCCTCCCTCCTTCCAGCCCTCAACAC
CCACGCGCAAAGCCTGATCTCTCACTGGCATGCCCATGGGCACGACGTTC
CGATCTCTTACTGCCTATCTACCCAGGGCGAAAGCCGCATTTTCTTCAAC
GAGGTGTGTATGTAGTAGGTGTCCTACTTTCCCTCCCTTCCTCCCTCCCT
CCCTCCCTCCCTCTCATCTCCCTTCTTGTGTACCTCATGACTCCACCTTC
TCCTCCCTCCCGCCCTCCCTCCATTCCTCCCTCCCTCCCCCTCTCTCTCA
AGCCCTACAATCATCGATTCCTACCTAATGTCGCCGAGGCCAGAAATCAG
CAGGAGCTTCCTGTGCCTTTCTATATCTGGTCACGGTAGGGAGGGGCGGG
AGAGAGAGAAGGAGAGAAGAAGGGGTGAGGGAGAGAAGGAAGGAAGAAGG
AGGGAGGGAGGGAGGGAGGGGGGGAAGGAGGGGAGGAGGGGAAGGAGGGA
GGGAGGGGGGGAAGGAGGGGAGGAGGAAGGGGCGGTTACGGGAAAGTATT
CTATCATTTTTCAACGGAGTTGTTATTTCCGTTTGGATGTTTAGAACTGG
CTTGGGAGGAGGGGATAGACGTAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGAGGGAGGGAAGGAAGGGAGGGAGGTTTACTGTCTCTCACGCGCCTTCT
CTCCTTCTCTCCCTCCCTCCCGCCGTTCCAACCGTCAGTGTGATTGCTCC
CGAAGATCAAGCGTTATTCGTAACGGCAGTGACTGAGACTTTATTTGGGC
TGCCCCTTGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGGGGGAGGGAGAG
GAGGAGGGGGGGGGGAGGGAGTCGTCGATGGTGGCCAAGGTACGTCGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGAGGGAC
GGGGGGGAGAAATTAAAAATGAGCAACTTCGATTGCTAAGTGGATGAATC
ATGCTTTCAAGATATATCCCTTGCATCTCCTCCCTCCAATCCCTCCCTCC
CTCCCTCCTTTCCTCCCTCCCTCCCTCCCTCCTTTCCTCTCTCCCTCCTT
CCTTCCTTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCAGTGCATCC
TTGTCGACGGCAGCGAGGCCTTTTTCCTCCTTCATTACAGTGTGTTGTAC
ACCCGTGCCGGAGTGGCGACGGCTTTTGCTGCCGTGCCCCTCCTTCAGCA
CGCGGACTACTACGCCGTGCCGCGTCCTTTCCCAGGTAGAGGGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGGGGAGGGGAGGGG
ACGTATGTTTGGCTCCTGCGGCTGGCATGGTTACCCACGCTCTCCCTCCT
TTTCTCCTTCCTTTTTTTCCTTTTTTTCTACCTTCCTTTCCTCCCTCCCT
CCCTCTTCCCCTCCTTCAAGTACTCAAGACTGCCACTGCTATAATCTGTC
TCCTCCTCCACCACCACCTGCTCCTCTTCCTCCTTCACGAAGCATCCGGG
TAGCTTCGCCTTTCCTCCCTCCCTCCCTCCCTCCTTTCCTCCCTCCCTTT
CCGACCCATTTCGAGGCTTGTCGCGGCGCTCGTCCTCGTCGGGCGAGGTC
TCAGGGGAGGACGAGGGAGAGGAAGGGGAGGAGGGAGGGCGGCACGAGAC
ACCCTGGAGTGCGCAGTTTCCGCCGCAGGTATGGAAGGGAGGGAGGGAGG
GAGGGAGGGCGATAAAAAGATATTGGGAGGAAGGGAGGGAAGGAGGGAGA
TTGGAAGATATGTGGAAGAGAAACGCTTTGCTAAGTTCATTTTTGGGGTG
GATGGATGACTCATCTAGTCCACCCTCCCTTCCTCCCTCATTCCCTCCCT
CCCTGCTTCCCTCTTTCCTTCTTGAACCTTTTACACCTGCACCTGCAGGT
GGTGGAAGATGATGCGAAGCTGCAGGTGAATGGGTTGCTTCCTTCGCCGG
GAGACCTGGATCGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAAGGAGAAAGGAAGGGAGAGAGGGAGAGAGGGA
TGAAGGGAGGAAGGGTTGTAAGTATGTATTGTCATCATCCACTACATTAG
TTTACGCGCATGAGACCTGAGCGCCCTCTCGGGTCAAAGGGGAGTCTGTT
ACGCTCTACCCATTTACCAGCCTCGTTACCTCCCCTCCCTCCCTCCCTCC
CTTCCTCACTCCATTTCTCTTCCACCGCGTAGCAGTTCCTCGGGCACCGA
CTGCCTCTCCATCTCCGTGGATGCCGCTTGTCCTTCCTCCCTTCCCTTCT
CGCTCCCTTCCTTCCTCCCTTCCTCCCTCCCTTCCTCCCTCCCTTCCTCC
CTCCCTCCCTCGCCCATCGTTCTGCGTTCGGCTTTGAGTGGCGAAGGCAG
CATCGGGAGCTCCGAATGGCCTGCCGTTCCTCCTCCCTTAGAGGAGTTGA
AGCAAGCAGCGAGGGAGGGAGCATCGTTTGGGGAGGAGGAAAAAGGATGT
GAGTACGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAAAGGTGTCGTAAGT
ATGATTTAGGTGCTACTCGGCTGAAGTCCCATCGGCCACTGTTGCTCCGT
TGAGTCGTCCTTATCCCTCCTCCCTCCCTACCTCCCTCTTTCCCCGCCGT
TTTTCCAGCGCAGGATGGCAAGGCAAGCAGTAGTGACCGGACCGTCGGCC
ACACGGCGGATCACAACCCTCAAATGTTGGTAGATTAGAGATGCGAAAGA
GGGGAGGAAGGGGAAGGAGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGCCTTGAAAATGAACCCTGCAAACATCTCCTACACCCTCTCTC
TCACAGCACCATCGCCTCGAGCAAACGAAATGCCTTCCCGTTAAATCGCT
CTCTTCCGCCTTCCCCTCCCTCCATCCCACCCTCCCTCCCTCCCTCAGAT
CTAGCCAGCATGCGTCCCAAGGCGGCTCCTACATCCTTCCTTCCTACCTT
AGACTTCTTTCTCCTCTGACACATCGCCTCCTCTACCACCCTGTCTCGCC
CTCCTCCTCATTCCCTCCCGCCCAGCCCTCCTTCTCCCTCCCTGTAAATT
CTGTTCAAATTCCCAGCCGCGTCGCACGGGCGGAGGAGGGGCGAGGGAGG
GGGGGGTGGAGGGAGGGAGATGGAGGGGGGAAAGGGCGAGGGAGAGGCTG
AAAGGAGACTCGATGAGAAGAGACGGGAAGGGGAGGAAGGGAGGGAGGAA
GAGAGGGAGGGCGGCACAC
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Coding sequence (CDS) from alignment at scaffold_59:77085..80403-

>mRNA_10800 ID=mRNA_10800|Name=jgi.p|Nanoce1779_2|611862|organism=Nannochloropsis oceanica|type=CDS|length=1755bp|location=Sequence derived from alignment at scaffold_59:77085..80403- (Nannochloropsis oceanica)
ATCTAGCCAGCATGCGTCCCAAGGCGGCTCCTACATCCTTCCTTCCTACC
TTAGACTTCTTTCTCCTCTGACACATCGCCTCCTCTACCACCCTGTCTCG
CCCTCCTCCTCATTCCCTCCCGCCCAGCCCTCCTTCTCCCTCCCTGTAAA
TTCTGTTCAAATTCCCAGCCGCGTCGCACGGGCGGAGGAGGGGCGAGGGA
GGGGGGGGTGGAGGGAGGGAGATGGAGGGGGGAAAGGGCGAGGGAGAGGC
TGACGCAGGATGGCAAGGCAAGCAGTAGTGACCGGACCGTCGGCCACACG
GCGGATCACAACCCTCAAATAGTTCCTCGGGCACCGACTGCCTCTCCATC
TCCGTGGATGCCGCTTGTCCTTCCTCCCTTCCCTTCTCGCTCCCTTCCTT
CCTCCCTTCCTCCCTCCCTTCCTCCCTCCCTTCCTCCCTCCCTCCCTCGC
CCATCGTTCTGCGTTCGGCTTTGAGTGGCGAAGGCAGCATCGGGAGCTCC
GAATGGCCTGCCGTTCCTCCTCCCTTAGAGGAGTTGAAGCAAGCAGCGAG
GGAGGGAGCATCGTTTGGGGAGGAGGAAAAAGGATATCTAGCCAGCATGC
GTCCCAAGGCGGCTCCTACATCCTTCCTTCCTACCTTAGACTTCTTTCTC
CTCTGACACATCGCCTCCTCTACCACCCTGTCTCGCCCTCCTCCTCATTC
CCTCCCGCCCAGCCCTCCTTCTCCCTCCCTGTAAATTCTGTTCAAATTCC
CAGCCGCGTCGCACGGGCGGAGGAGGGGCGAGGGAGGGGGGGGTGGAGGG
AGGGAGATGGAGGGGGGAAAGGGCGAGGGAGAGGCTGACGCAGGATGGCA
AGGCAAGCAGTAGTGACCGGACCGTCGGCCACACGGCGGATCACAACCCT
CAAATAGTTCCTCGGGCACCGACTGCCTCTCCATCTCCGTGGATGCCGCT
TGTCCTTCCTCCCTTCCCTTCTCGCTCCCTTCCTTCCTCCCTTCCTCCCT
CCCTTCCTCCCTCCCTTCCTCCCTCCCTCCCTCGCCCATCGTTCTGCGTT
CGGCTTTGAGTGGCGAAGGCAGCATCGGGAGCTCCGAATGGCCTGCCGTT
CCTCCTCCCTTAGAGGAGTTGAAGCAAGCAGCGAGGGAGGGAGCATCGTT
TGGGGAGGAGGAAAAAGGATATCTAGCCAGCATGCGTCCCAAGGCGGCTC
CTACATCCTTCCTTCCTACCTTAGACTTCTTTCTCCTCTGACACATCGCC
TCCTCTACCACCCTGTCTCGCCCTCCTCCTCATTCCCTCCCGCCCAGCCC
TCCTTCTCCCTCCCTGTAAATTCTGTTCAAATTCCCAGCCGCGTCGCACG
GGCGGAGGAGGGGCGAGGGAGGGGGGGGTGGAGGGAGGGAGATGGAGGGG
GGAAAGGGCGAGGGAGAGGCTGACGCAGGATGGCAAGGCAAGCAGTAGTG
ACCGGACCGTCGGCCACACGGCGGATCACAACCCTCAAATAGTTCCTCGG
GCACCGACTGCCTCTCCATCTCCGTGGATGCCGCTTGTCCTTCCTCCCTT
CCCTTCTCGCTCCCTTCCTTCCTCCCTTCCTCCCTCCCTTCCTCCCTCCC
TTCCTCCCTCCCTCCCTCGCCCATCGTTCTGCGTTCGGCTTTGAGTGGCG
AAGGCAGCATCGGGAGCTCCGAATGGCCTGCCGTTCCTCCTCCCTTAGAG
GAGTTGAAGCAAGCAGCGAGGGAGGGAGCATCGTTTGGGGAGGAGGAAAA
AGGAT
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Synonyms
Publications