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Properties
| Property Name | Value |
|---|
| TranscriptId | 575326 |
| Track | FilteredModels2 |
| ProteinId | 575240 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:1171838..1174201 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1080 ID=mRNA_1080|Name=jgi.p|Nanoce1779_2|575240|organism=Nannochloropsis oceanica|type=mRNA|length=1821bp
ACAGCCATGTACGTTCCAAGGTACACACAACTACGGCGGCGGCCTCGACA
ACTTGTGCTTTCATTTATTATCGTCTTTGCCAATTTGGGGCTTGTCGCTG
GGTTTGTTTACCCGGCGGCTTTCTCATCACTTGGCAGTTCTCCTGCTCTA
TCAAGACCACACACCTTCCGCCAGGCTATCGAGACCCCCGTCCCCTCCCC
TTCCTCCTCCTCCTCTACCTCTCCCTCCATTACCCCCATCCTCCGCGACA
CATTCGACTGTACCGGTTTCTTCTGTCCCTTTCGAACCTTTGGAGTGGAA
GCACTCGTTCCCTCCTCCTCTTTCTCTTCCTCCTCCTTTTCCTCCTCCCC
ACCTTCCTCAGCTGCCAAACCCCTCCTCCTCTACCTCCCCGGTCTCGACG
GCTCAGGCCTCACCGCCTTCGTTCAATACCCCGCATTGGCTGCAGAATTC
GAGGTTCGCTGTCTTACCATGCCCAACACCGATAGAAGCACTTTCATGGA
CCTCGTCCACCTTGTCCGCACCGAGCTCCGTTCCTTCCCCCACCGGCAAG
TCTTTCTCATGGGTGAGTCCTTTGGCGGTCTCCTCGCTCTGGGGACAGCC
CTCGAACGTATTAATCGCCCTGATGCCCGCGAAAGTACCACGGAGATTAA
AGGCGTGGTACTAGTTAACCCCGCCACCTCCTATTCTAGAACGATCTGGG
CGAAATTTGGCCAAGCAATAACCAAGCTCCCAGAGCCCTTCTACGGACTC
TCACTCCTCCCGATTGGACTCCTCCTCGTCGATGCCGGACAGATTCAGAG
CGTGATTAAAGATGCATTTGGTCGGCTGCGGGAAATCTCGTCGGTTTCGT
CGCTTTCATCCCCTCGTCCTTCGCCCCCTAATCCCGCGGACCAACGTGCT
CGCATGGCAGCCTTAGGACTGTCACCCTTTCAAATTGAGTTCTTCTCCGC
AGCCCTCCCGGTGCTCATTGAGCGATTGAACCTTCTACCCGCCCCGTGCC
TGGAGTGGCGGCTGTTGCAATGGCTAGGGGCGGGGTCAGAGATGGTCGAA
CCGCAGCTACACAGGATAAAAACCCCTGTGTTAGTAGTCGCGGGGACGGT
GGATCGCCTCTTGCCATCGTTTGAGGAAGCTAAACGTTTAAAGAGAGAGT
TGACTGATTGTCAAATTCATTTTGTGGAGGGGGCGGGGCATGGAGGCAGC
CTGGATCAGCGGGTGCAGTTGCTGGAGATTCTCAAGGGTTGGGCGCCAGT
GGGGAGGGTTTTGGGATGATGAGATGCAAAGAAAGGAAAAGGAGGAGAAG
AGGGGGGAGCGCTTGTGTGAGGTTTGCTTTGTGGAAGACGCGGGGCATGA
TGCAGCTTGAAGCAGCTGCAGATTCGACAGCGGTGGAGGTGGTTGCAAGA
GATGAAGGCTGGTGAGAGAAAGCAGGGAAAGGGGAGATGGATAAAATGAC
AGCTGATCAGAGATAACGGACGTGTTAGGGTTAAGAGGAAGGATAGAATG
CGTGGTTTGATTGATTTCGATTTTTTGTATTTGAGGATTTTGGAGTGTGG
AGATTGACAGAGAAGAAAAGAGGGTCACGTCCGTCGGAGCAGTGATGGTT
GTCGGTCGTCGACTGCAGGGTATAAAATGACGACGGACGTGTTGAGGATA
AATTGTGTGAATGGATAGGTAAAAAGCGCGTAATCTGTACATTGGACCTA
GGGTTATCGTCCTAGCATCCCCCCCGGAAAAAAAAATGAATGAATGAAAA
TAAGTTTGACAAGAACGAGTTGCGATTGGGCTAGTGCACGCCTGTGTTTG
AGGGCTTGCGGCCCATGGGGA back to topprotein sequence of jgi.p|Nanoce1779_2|575240 >mRNA_1080-protein ID=mRNA_1080-protein|Name=jgi.p|Nanoce1779_2|575240|organism=Nannochloropsis oceanica|type=polypeptide|length=421bp
MYVPRYTQLRRRPRQLVLSFIIVFANLGLVAGFVYPAAFSSLGSSPALSR
PHTFRQAIETPVPSPSSSSSTSPSITPILRDTFDCTGFFCPFRTFGVEAL
VPSSSFSSSSFSSSPPSSAAKPLLLYLPGLDGSGLTAFVQYPALAAEFEV
RCLTMPNTDRSTFMDLVHLVRTELRSFPHRQVFLMGESFGGLLALGTALE
RINRPDARESTTEIKGVVLVNPATSYSRTIWAKFGQAITKLPEPFYGLSL
LPIGLLLVDAGQIQSVIKDAFGRLREISSVSSLSSPRPSPPNPADQRARM
AALGLSPFQIEFFSAALPVLIERLNLLPAPCLEWRLLQWLGAGSEMVEPQ
LHRIKTPVLVVAGTVDRLLPSFEEAKRLKRELTDCQIHFVEGAGHGGSLD
QRVQLLEILKGWAPVGRVLG* back to topmRNA from alignment at scaffold_2:1171838..1174201- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1080 ID=mRNA_1080|Name=jgi.p|Nanoce1779_2|575240|organism=Nannochloropsis oceanica|type=mRNA|length=2364bp|location=Sequence derived from alignment at scaffold_2:1171838..1174201- (Nannochloropsis oceanica)
ACAGCCATGTACGTTCCAAGGTACACACAACTACGGCGGCGGCCTCGACA
ACTTGTGCTTTCATTTATTATCGTCTTTGCCAATTTGGGGCTTGTCGCTG
GGTTTGTTTACCCGGCGGCTTTCTCATCACTTGGCAGTTCTCCTGCTCTA
TCAAGGTACGCTGGTGACACCACCTGCAAGTGCCACAACGATGCTATGCT
ATCTACACCATTAGATGCTTACATATCACCCCCTTGCCTCCCTCATCCCT
CATTATTATCACTCTCCCTTCACATAGACCACACACCTTCCGCCAGGCTA
TCGAGACCCCCGTCCCCTCCCCTTCCTCCTCCTCCTCTACCTCTCCCTCC
ATTACCCCCATCCTCCGCGACACATTCGACTGTACCGGTTTCTTCTGTCC
CTTTCGAACCTTTGGAGTGGAAGCACTCGTTCCCTCCTCCTCTTTCTCTT
CCTCCTCCTTTTCCTCCTCCCCACCTTCCTCAGCTGCCAAACCCCTCCTC
CTCTACCTCCCCGGTCTCGACGGCTCAGGCCTCACCGCCTTCGTTCAATA
CCCCGCATTGGCTGCAGAATTCGAGGTTCGCTGTCTTACCATGCCCAACA
CCGATAGAAGCACTTTCATGGACCTCGTCCACCTTGTCCGCACCGAGCTC
CGTTCCTTCCCCCACCGGCAAGTCTTTCTCATGGGTGAGTCCTTTGGCGG
TCTCCTCGCTCTGGGGACAGCCCTCGAACGTATTAATCGCCCTGATGCCC
GCGAAAGTACCACGGAGATTAAAGGCGTGGTACTAGTTAACCCCGCCACC
TCCTATTCTAGAACGATCTGGGCGAAATTTGGCCAAGCAATAACCAAGCT
CCCAGAGCCCTTCTACGGACTCTCACTCCTCCCGATTGGACTCCTCCTCG
TCGATGCCGGACAGATTCAGAGCGTGATTAAAGATGCATTTGGTCGGCTG
CGGGAAATCTCGTCGGTTTCGTCGCTTTCATCCCCTCGTCCTTCGCCCCC
TAATCCCGCGGACCAACGTGCTCGCATGGCAGCCTTAGGTAAAAGAATAA
ATTTAGATGAATACATAAATACATAAATACATCAGAAGACATGTGTGGAA
TCAAAAAGAGAGATGAGAATCTTGATATCCCCATTCTCCGAACCAAACTT
GAAGAGGAACATTTGGCGGCGGTCCTTCTACTGACTCATATAGCACACAC
ACATACACACACACACACACCCCTAATCCTCCCTCACTTCCTCCCTTCCT
CCTTCCCTTCCTTTCTCGTTTATTTTCCCTCTCACAGGACTGTCACCCTT
TCAAATTGAGTTCTTCTCCGCAGCCCTCCCGGTGCTCATTGAGCGATTGA
ACCTTCTACCCGCCCCGTGCCTGGAGTGGCGGCTGTTGCAATGGCTAGGG
GCGGGGTCAGAGATGGTCGAACCGCAGCTACACAGGCAAGAAATGGAATA
GGGGTAGGGAAGGGGGGAGGGAGCCATGACGAGTCAGGTGGAAGCCGCAT
TTTTGTTAGAATCGCATTGCGCCTTGTGTCTTCTTGTCCTTACATTTTAC
AAAAATACACACATACACACACATACACACGTACACTCTTCTCTCTGCCA
ACGGCAGGATAAAAACCCCTGTGTTAGTAGTCGCGGGGACGGTGGATCGC
CTCTTGCCATCGTTTGAGGAAGCTAAACGTTTAAAGAGAGAGTTGACTGA
TTGTCAAATTCATTTTGTGGAGGGGGCGGGGCATGGAGGCAGCCTGGATC
AGCGGGTGCAGTTGCTGGAGATTCTCAAGGGTTGGGCGCCAGTGGGGAGG
GTTTTGGGATGATGAGATGCAAAGAAAGGAAAAGGAGGAGAAGAGGGGGG
AGCGCTTGTGTGAGGTTTGCTTTGTGGAAGACGCGGGGCATGATGCAGCT
TGAAGCAGCTGCAGATTCGACAGCGGTGGAGGTGGTTGCAAGAGATGAAG
GCTGGTGAGAGAAAGCAGGGAAAGGGGAGATGGATAAAATGACAGCTGAT
CAGAGATAACGGACGTGTTAGGGTTAAGAGGAAGGATAGAATGCGTGGTT
TGATTGATTTCGATTTTTTGTATTTGAGGATTTTGGAGTGTGGAGATTGA
CAGAGAAGAAAAGAGGGTCACGTCCGTCGGAGCAGTGATGGTTGTCGGTC
GTCGACTGCAGGGTATAAAATGACGACGGACGTGTTGAGGATAAATTGTG
TGAATGGATAGGTAAAAAGCGCGTAATCTGTACATTGGACCTAGGGTTAT
CGTCCTAGCATCCCCCCCGGAAAAAAAAATGAATGAATGAAAATAAGTTT
GACAAGAACGAGTTGCGATTGGGCTAGTGCACGCCTGTGTTTGAGGGCTT
GCGGCCCATGGGGA back to topCoding sequence (CDS) from alignment at scaffold_2:1171838..1174201- >mRNA_1080 ID=mRNA_1080|Name=jgi.p|Nanoce1779_2|575240|organism=Nannochloropsis oceanica|type=CDS|length=5052bp|location=Sequence derived from alignment at scaffold_2:1171838..1174201- (Nannochloropsis oceanica)
GATAAAAACCCCTGTGTTAGTAGTCGCGGGGACGGTGGATCGCCTCTTGC
CATCGTTTGAGGAAGCTAAACGTTTAAAGAGAGAGTTGACTGATTGTCAA
ATTCATTTTGTGGAGGGGGCGGGGCATGGAGGCAGCCTGGATCAGCGGGT
GCAGTTGCTGGAGATTCTCAAGGGTTGGGCGCCAGTGGGGAGGGTTTTGG
GATGAGACTGTCACCCTTTCAAATTGAGTTCTTCTCCGCAGCCCTCCCGG
TGCTCATTGAGCGATTGAACCTTCTACCCGCCCCGTGCCTGGAGTGGCGG
CTGTTGCAATGGCTAGGGGCGGGGTCAGAGATGGTCGAACCGCAGCTACA
CAGACCACACACCTTCCGCCAGGCTATCGAGACCCCCGTCCCCTCCCCTT
CCTCCTCCTCCTCTACCTCTCCCTCCATTACCCCCATCCTCCGCGACACA
TTCGACTGTACCGGTTTCTTCTGTCCCTTTCGAACCTTTGGAGTGGAAGC
ACTCGTTCCCTCCTCCTCTTTCTCTTCCTCCTCCTTTTCCTCCTCCCCAC
CTTCCTCAGCTGCCAAACCCCTCCTCCTCTACCTCCCCGGTCTCGACGGC
TCAGGCCTCACCGCCTTCGTTCAATACCCCGCATTGGCTGCAGAATTCGA
GGTTCGCTGTCTTACCATGCCCAACACCGATAGAAGCACTTTCATGGACC
TCGTCCACCTTGTCCGCACCGAGCTCCGTTCCTTCCCCCACCGGCAAGTC
TTTCTCATGGGTGAGTCCTTTGGCGGTCTCCTCGCTCTGGGGACAGCCCT
CGAACGTATTAATCGCCCTGATGCCCGCGAAAGTACCACGGAGATTAAAG
GCGTGGTACTAGTTAACCCCGCCACCTCCTATTCTAGAACGATCTGGGCG
AAATTTGGCCAAGCAATAACCAAGCTCCCAGAGCCCTTCTACGGACTCTC
ACTCCTCCCGATTGGACTCCTCCTCGTCGATGCCGGACAGATTCAGAGCG
TGATTAAAGATGCATTTGGTCGGCTGCGGGAAATCTCGTCGGTTTCGTCG
CTTTCATCCCCTCGTCCTTCGCCCCCTAATCCCGCGGACCAACGTGCTCG
CATGGCAGCCTTAGATGTACGTTCCAAGGTACACACAACTACGGCGGCGG
CCTCGACAACTTGTGCTTTCATTTATTATCGTCTTTGCCAATTTGGGGCT
TGTCGCTGGGTTTGTTTACCCGGCGGCTTTCTCATCACTTGGCAGTTCTC
CTGCTCTATCAAGGATAAAAACCCCTGTGTTAGTAGTCGCGGGGACGGTG
GATCGCCTCTTGCCATCGTTTGAGGAAGCTAAACGTTTAAAGAGAGAGTT
GACTGATTGTCAAATTCATTTTGTGGAGGGGGCGGGGCATGGAGGCAGCC
TGGATCAGCGGGTGCAGTTGCTGGAGATTCTCAAGGGTTGGGCGCCAGTG
GGGAGGGTTTTGGGATGAGACTGTCACCCTTTCAAATTGAGTTCTTCTCC
GCAGCCCTCCCGGTGCTCATTGAGCGATTGAACCTTCTACCCGCCCCGTG
CCTGGAGTGGCGGCTGTTGCAATGGCTAGGGGCGGGGTCAGAGATGGTCG
AACCGCAGCTACACAGACCACACACCTTCCGCCAGGCTATCGAGACCCCC
GTCCCCTCCCCTTCCTCCTCCTCCTCTACCTCTCCCTCCATTACCCCCAT
CCTCCGCGACACATTCGACTGTACCGGTTTCTTCTGTCCCTTTCGAACCT
TTGGAGTGGAAGCACTCGTTCCCTCCTCCTCTTTCTCTTCCTCCTCCTTT
TCCTCCTCCCCACCTTCCTCAGCTGCCAAACCCCTCCTCCTCTACCTCCC
CGGTCTCGACGGCTCAGGCCTCACCGCCTTCGTTCAATACCCCGCATTGG
CTGCAGAATTCGAGGTTCGCTGTCTTACCATGCCCAACACCGATAGAAGC
ACTTTCATGGACCTCGTCCACCTTGTCCGCACCGAGCTCCGTTCCTTCCC
CCACCGGCAAGTCTTTCTCATGGGTGAGTCCTTTGGCGGTCTCCTCGCTC
TGGGGACAGCCCTCGAACGTATTAATCGCCCTGATGCCCGCGAAAGTACC
ACGGAGATTAAAGGCGTGGTACTAGTTAACCCCGCCACCTCCTATTCTAG
AACGATCTGGGCGAAATTTGGCCAAGCAATAACCAAGCTCCCAGAGCCCT
TCTACGGACTCTCACTCCTCCCGATTGGACTCCTCCTCGTCGATGCCGGA
CAGATTCAGAGCGTGATTAAAGATGCATTTGGTCGGCTGCGGGAAATCTC
GTCGGTTTCGTCGCTTTCATCCCCTCGTCCTTCGCCCCCTAATCCCGCGG
ACCAACGTGCTCGCATGGCAGCCTTAGATGTACGTTCCAAGGTACACACA
ACTACGGCGGCGGCCTCGACAACTTGTGCTTTCATTTATTATCGTCTTTG
CCAATTTGGGGCTTGTCGCTGGGTTTGTTTACCCGGCGGCTTTCTCATCA
CTTGGCAGTTCTCCTGCTCTATCAAGGATAAAAACCCCTGTGTTAGTAGT
CGCGGGGACGGTGGATCGCCTCTTGCCATCGTTTGAGGAAGCTAAACGTT
TAAAGAGAGAGTTGACTGATTGTCAAATTCATTTTGTGGAGGGGGCGGGG
CATGGAGGCAGCCTGGATCAGCGGGTGCAGTTGCTGGAGATTCTCAAGGG
TTGGGCGCCAGTGGGGAGGGTTTTGGGATGAGACTGTCACCCTTTCAAAT
TGAGTTCTTCTCCGCAGCCCTCCCGGTGCTCATTGAGCGATTGAACCTTC
TACCCGCCCCGTGCCTGGAGTGGCGGCTGTTGCAATGGCTAGGGGCGGGG
TCAGAGATGGTCGAACCGCAGCTACACAGACCACACACCTTCCGCCAGGC
TATCGAGACCCCCGTCCCCTCCCCTTCCTCCTCCTCCTCTACCTCTCCCT
CCATTACCCCCATCCTCCGCGACACATTCGACTGTACCGGTTTCTTCTGT
CCCTTTCGAACCTTTGGAGTGGAAGCACTCGTTCCCTCCTCCTCTTTCTC
TTCCTCCTCCTTTTCCTCCTCCCCACCTTCCTCAGCTGCCAAACCCCTCC
TCCTCTACCTCCCCGGTCTCGACGGCTCAGGCCTCACCGCCTTCGTTCAA
TACCCCGCATTGGCTGCAGAATTCGAGGTTCGCTGTCTTACCATGCCCAA
CACCGATAGAAGCACTTTCATGGACCTCGTCCACCTTGTCCGCACCGAGC
TCCGTTCCTTCCCCCACCGGCAAGTCTTTCTCATGGGTGAGTCCTTTGGC
GGTCTCCTCGCTCTGGGGACAGCCCTCGAACGTATTAATCGCCCTGATGC
CCGCGAAAGTACCACGGAGATTAAAGGCGTGGTACTAGTTAACCCCGCCA
CCTCCTATTCTAGAACGATCTGGGCGAAATTTGGCCAAGCAATAACCAAG
CTCCCAGAGCCCTTCTACGGACTCTCACTCCTCCCGATTGGACTCCTCCT
CGTCGATGCCGGACAGATTCAGAGCGTGATTAAAGATGCATTTGGTCGGC
TGCGGGAAATCTCGTCGGTTTCGTCGCTTTCATCCCCTCGTCCTTCGCCC
CCTAATCCCGCGGACCAACGTGCTCGCATGGCAGCCTTAGATGTACGTTC
CAAGGTACACACAACTACGGCGGCGGCCTCGACAACTTGTGCTTTCATTT
ATTATCGTCTTTGCCAATTTGGGGCTTGTCGCTGGGTTTGTTTACCCGGC
GGCTTTCTCATCACTTGGCAGTTCTCCTGCTCTATCAAGGATAAAAACCC
CTGTGTTAGTAGTCGCGGGGACGGTGGATCGCCTCTTGCCATCGTTTGAG
GAAGCTAAACGTTTAAAGAGAGAGTTGACTGATTGTCAAATTCATTTTGT
GGAGGGGGCGGGGCATGGAGGCAGCCTGGATCAGCGGGTGCAGTTGCTGG
AGATTCTCAAGGGTTGGGCGCCAGTGGGGAGGGTTTTGGGATGAGACTGT
CACCCTTTCAAATTGAGTTCTTCTCCGCAGCCCTCCCGGTGCTCATTGAG
CGATTGAACCTTCTACCCGCCCCGTGCCTGGAGTGGCGGCTGTTGCAATG
GCTAGGGGCGGGGTCAGAGATGGTCGAACCGCAGCTACACAGACCACACA
CCTTCCGCCAGGCTATCGAGACCCCCGTCCCCTCCCCTTCCTCCTCCTCC
TCTACCTCTCCCTCCATTACCCCCATCCTCCGCGACACATTCGACTGTAC
CGGTTTCTTCTGTCCCTTTCGAACCTTTGGAGTGGAAGCACTCGTTCCCT
CCTCCTCTTTCTCTTCCTCCTCCTTTTCCTCCTCCCCACCTTCCTCAGCT
GCCAAACCCCTCCTCCTCTACCTCCCCGGTCTCGACGGCTCAGGCCTCAC
CGCCTTCGTTCAATACCCCGCATTGGCTGCAGAATTCGAGGTTCGCTGTC
TTACCATGCCCAACACCGATAGAAGCACTTTCATGGACCTCGTCCACCTT
GTCCGCACCGAGCTCCGTTCCTTCCCCCACCGGCAAGTCTTTCTCATGGG
TGAGTCCTTTGGCGGTCTCCTCGCTCTGGGGACAGCCCTCGAACGTATTA
ATCGCCCTGATGCCCGCGAAAGTACCACGGAGATTAAAGGCGTGGTACTA
GTTAACCCCGCCACCTCCTATTCTAGAACGATCTGGGCGAAATTTGGCCA
AGCAATAACCAAGCTCCCAGAGCCCTTCTACGGACTCTCACTCCTCCCGA
TTGGACTCCTCCTCGTCGATGCCGGACAGATTCAGAGCGTGATTAAAGAT
GCATTTGGTCGGCTGCGGGAAATCTCGTCGGTTTCGTCGCTTTCATCCCC
TCGTCCTTCGCCCCCTAATCCCGCGGACCAACGTGCTCGCATGGCAGCCT
TAGATGTACGTTCCAAGGTACACACAACTACGGCGGCGGCCTCGACAACT
TGTGCTTTCATTTATTATCGTCTTTGCCAATTTGGGGCTTGTCGCTGGGT
TTGTTTACCCGGCGGCTTTCTCATCACTTGGCAGTTCTCCTGCTCTATCA
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