jgi.p|Nanoce1779_2|534042, mRNA_10795 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|534042
Unique NamemRNA_10795
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length363
Alignment locationscaffold_59:53682..54361 +

Link to JBrowse

Properties
Property NameValue
TranscriptId534128
TrackFilteredModels2
ProteinId534042
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_59supercontigscaffold_59:53682..54361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|534042gene_10795Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|534042mRNA_10795-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10795CDS_10795Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10795 ID=mRNA_10795|Name=jgi.p|Nanoce1779_2|534042|organism=Nannochloropsis oceanica|type=mRNA|length=363bp
ATGGAAGCCGGCCGTGGGCTGTGCCACATCGCCGAGGCCTTACAACACAC
GCATTTCGTCAGTCGCCGGCTTCACTTGGGAGTAGCGCCTGAATCAATTT
TCCTCACTCCTCAAGGCGTATGGAAGCTGGGCGGATTCGGCTTCTCGATT
ACTTTGGCGCCCAGCGAGACTGGCCCCAATATGCAAGTCCTCTGCCCCTT
CTACCAGAGCGCGGCTTTGCGTAAAGCTGGCGGATACCGCTTGGAGCCTC
ACCTCTCCTACACTGCACCGGAGATAACGGCTCCGGGCACTTCGCGCATT
TCCTACAGCGCCGATGCCTTTTCCTTGGCACTCCTGGCCATAGAAGCCTT
CCAACTCCCCTCC
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protein sequence of jgi.p|Nanoce1779_2|534042

>mRNA_10795-protein ID=mRNA_10795-protein|Name=jgi.p|Nanoce1779_2|534042|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MEAGRGLCHIAEALQHTHFVSRRLHLGVAPESIFLTPQGVWKLGGFGFSI
TLAPSETGPNMQVLCPFYQSAALRKAGGYRLEPHLSYTAPEITAPGTSRI
SYSADAFSLALLAIEAFQLPS
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mRNA from alignment at scaffold_59:53682..54361+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10795 ID=mRNA_10795|Name=jgi.p|Nanoce1779_2|534042|organism=Nannochloropsis oceanica|type=mRNA|length=680bp|location=Sequence derived from alignment at scaffold_59:53682..54361+ (Nannochloropsis oceanica)
ATGGAAGCCGGCCGTGGGCTGTGCCACATCGCCGAGGCCTTACAACACAC
GCATTTCGTCAGTCGCCGGCTTCACTTGGGAGTAGCGCCTGAATCAATTT
TCCTCACTCCTCAAGGCGTATGGAAGCTGGGCGGATTCGGCTTCTCGATT
ACTTTGGCGCCCAGCGAGACTGGTGAGCAATTCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTCATCTTTCATTT
CCACGTCTTTATCTGATCCGTTTAAGTCCCTCCCTCCCTCCCTCCCTCCC
TCAGGCCCCAATATGCAAGTCCTCTGCCCCTTCTACCAGAGCGCGGCTTT
GCGTAAAGCTGGCGGATACCGCTTGGAGCCTCACCTCTCCTACACTGCAC
CGGAGGTAGGTGTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCTTC
CTTCTTATTTCTCTTGCCATTGCCCTGCTAATCCTCTTCCAACCTACCTA
CCTACCTACCTACTTACCTACCTACCTACCTACCTACCTACCTACCTACC
TACCTACCTACCTACCTACCTCCCTCCCTCCCCTCCCCAGATAACGGCTC
CGGGCACTTCGCGCATTTCCTACAGCGCCGATGCCTTTTCCTTGGCACTC
CTGGCCATAGAAGCCTTCCAACTCCCCTCC
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Coding sequence (CDS) from alignment at scaffold_59:53682..54361+

>mRNA_10795 ID=mRNA_10795|Name=jgi.p|Nanoce1779_2|534042|organism=Nannochloropsis oceanica|type=CDS|length=1089bp|location=Sequence derived from alignment at scaffold_59:53682..54361+ (Nannochloropsis oceanica)
ATGGAAGCCGGCCGTGGGCTGTGCCACATCGCCGAGGCCTTACAACACAC
GCATTTCGTCAGTCGCCGGCTTCACTTGGGAGTAGCGCCTGAATCAATTT
TCCTCACTCCTCAAGGCGTATGGAAGCTGGGCGGATTCGGCTTCTCGATT
ACTTTGGCGCCCAGCGAGACTGGCCCCAATATGCAAGTCCTCTGCCCCTT
CTACCAGAGCGCGGCTTTGCGTAAAGCTGGCGGATACCGCTTGGAGCCTC
ACCTCTCCTACACTGCACCGGAGATAACGGCTCCGGGCACTTCGCGCATT
TCCTACAGCGCCGATGCCTTTTCCTTGGCACTCCTGGCCATAGAAGCCTT
CCAACTCCCCTCCATGGAAGCCGGCCGTGGGCTGTGCCACATCGCCGAGG
CCTTACAACACACGCATTTCGTCAGTCGCCGGCTTCACTTGGGAGTAGCG
CCTGAATCAATTTTCCTCACTCCTCAAGGCGTATGGAAGCTGGGCGGATT
CGGCTTCTCGATTACTTTGGCGCCCAGCGAGACTGGCCCCAATATGCAAG
TCCTCTGCCCCTTCTACCAGAGCGCGGCTTTGCGTAAAGCTGGCGGATAC
CGCTTGGAGCCTCACCTCTCCTACACTGCACCGGAGATAACGGCTCCGGG
CACTTCGCGCATTTCCTACAGCGCCGATGCCTTTTCCTTGGCACTCCTGG
CCATAGAAGCCTTCCAACTCCCCTCCATGGAAGCCGGCCGTGGGCTGTGC
CACATCGCCGAGGCCTTACAACACACGCATTTCGTCAGTCGCCGGCTTCA
CTTGGGAGTAGCGCCTGAATCAATTTTCCTCACTCCTCAAGGCGTATGGA
AGCTGGGCGGATTCGGCTTCTCGATTACTTTGGCGCCCAGCGAGACTGGC
CCCAATATGCAAGTCCTCTGCCCCTTCTACCAGAGCGCGGCTTTGCGTAA
AGCTGGCGGATACCGCTTGGAGCCTCACCTCTCCTACACTGCACCGGAGA
TAACGGCTCCGGGCACTTCGCGCATTTCCTACAGCGCCGATGCCTTTTCC
TTGGCACTCCTGGCCATAGAAGCCTTCCAACTCCCCTCC
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Synonyms
Publications