jgi.p|Nanoce1779_2|611847, mRNA_10794 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611847
Unique NamemRNA_10794
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length475
Alignment locationscaffold_59:52716..53355 +

Link to JBrowse

Properties
Property NameValue
TranscriptId611933
TrackFilteredModels2
ProteinId611847
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_59supercontigscaffold_59:52716..53355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611847gene_10794Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611847mRNA_10794-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10794CDS_10794Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10794 ID=mRNA_10794|Name=jgi.p|Nanoce1779_2|611847|organism=Nannochloropsis oceanica|type=mRNA|length=475bp
AGGCAGGAAGTAGGAGAAGGAGTCTCGCCGCCTTTGCTCCCCCTTTCTCC
TATCCTCCAGCCCCCCCGCCTCAACTCCGCCCCCCGCCTCCTCCATCCAC
GCCCCTCCTCCCACGTAAGCACAAGCAGCCATGGGGAACGAACTGACTAA
GAAATATGACAAGGATAAGATTCACACGGCCTCGGGAGGGCATGAGTGCC
TTTGGAAAATCTATCAGGCCAGAGTCAAAAGCACGGAGGAACAGGTCTCT
GTCTTTGTCCTGGACCTGGACGACTTCAAAGGCCTGCCTAAAAATGAACG
GGAACAACTTTTTGACATCTACAGAAAGGTGCTTGATTGAAGGAATGGAA
TGGAAAATACATCAGGATCTCCCCCCCTCAAGACTCTCACCTCTCTCCCT
CCCTTCCCTCCCTCATTCCCTTCCCTTCCCTCCCTCCCTCCCTCCCTCCT
CTAGGACATTCGCGCCTTACGTGAG
back to top

protein sequence of jgi.p|Nanoce1779_2|611847

>mRNA_10794-protein ID=mRNA_10794-protein|Name=jgi.p|Nanoce1779_2|611847|organism=Nannochloropsis oceanica|type=polypeptide|length=70bp
MGNELTKKYDKDKIHTASGGHECLWKIYQARVKSTEEQVSVFVLDLDDFK
GLPKNEREQLFDIYRKVLD*
back to top

mRNA from alignment at scaffold_59:52716..53355+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10794 ID=mRNA_10794|Name=jgi.p|Nanoce1779_2|611847|organism=Nannochloropsis oceanica|type=mRNA|length=640bp|location=Sequence derived from alignment at scaffold_59:52716..53355+ (Nannochloropsis oceanica)
AGGCAGGAAGTAGGAGAAGGAGTCTCGCCGCCTTTGCTCCCCCTTTCTCC
TATCCTCCAGCCCCCCCGCCTCAACTCCGCCCCCCGCCTCCTCCATCCAC
GCCCCTCCTCCCACGTAAGCACAAGCAGCCATGGGGAACGAACTGACTAA
GAAATATGACAAGGATAAGATTCACACGGCCTCGGGAGGGCATGAGTGCC
TTTGGAAAATCTATCAGGCCAGAGTCAAAAGCACGGAGGAACAGGTACAT
CCATCCCCCTCGATGCATGTCCTCTCTCCCTCCCTCCAGCGTGCTCATCC
TTCACTCATTGATATTTTGTGTGCCACACTCCTTGAACCGATCCATATCA
TTATTACACTCAAGCTCCTCTTCCATTACGCCCCTTCTTCTCTCCTTCCT
GCCGCCCAGGTCTCTGTCTTTGTCCTGGACCTGGACGACTTCAAAGGCCT
GCCTAAAAATGAACGGGAACAACTTTTTGACATCTACAGAAAGGTGCTTG
ATTGAAGGAATGGAATGGAAAATACATCAGGATCTCCCCCCCTCAAGACT
CTCACCTCTCTCCCTCCCTTCCCTCCCTCATTCCCTTCCCTTCCCTCCCT
CCCTCCCTCCCTCCTCTAGGACATTCGCGCCTTACGTGAG
back to top

Coding sequence (CDS) from alignment at scaffold_59:52716..53355+

>mRNA_10794 ID=mRNA_10794|Name=jgi.p|Nanoce1779_2|611847|organism=Nannochloropsis oceanica|type=CDS|length=420bp|location=Sequence derived from alignment at scaffold_59:52716..53355+ (Nannochloropsis oceanica)
ATGGGGAACGAACTGACTAAGAAATATGACAAGGATAAGATTCACACGGC
CTCGGGAGGGCATGAGTGCCTTTGGAAAATCTATCAGGCCAGAGTCAAAA
GCACGGAGGAACAGGTCTCTGTCTTTGTCCTGGACCTGGACGACTTCAAA
GGCCTGCCTAAAAATGAACGGGAACAACTTTTTGACATCTACAGAAAGGT
GCTTGATTGAATGGGGAACGAACTGACTAAGAAATATGACAAGGATAAGA
TTCACACGGCCTCGGGAGGGCATGAGTGCCTTTGGAAAATCTATCAGGCC
AGAGTCAAAAGCACGGAGGAACAGGTCTCTGTCTTTGTCCTGGACCTGGA
CGACTTCAAAGGCCTGCCTAAAAATGAACGGGAACAACTTTTTGACATCT
ACAGAAAGGTGCTTGATTGA
back to top
Synonyms
Publications