jgi.p|Nanoce1779_2|611839, mRNA_10792 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611839
Unique NamemRNA_10792
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1183
Alignment locationscaffold_59:49003..50185 +

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Properties
Property NameValue
TranscriptId611925
TrackFilteredModels2
ProteinId611839
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_59supercontigscaffold_59:49003..50185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611839gene_10792Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611839mRNA_10792-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10792CDS_10792Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10792 ID=mRNA_10792|Name=jgi.p|Nanoce1779_2|611839|organism=Nannochloropsis oceanica|type=mRNA|length=1183bp
AGGAACTTAAACCTTTATCATTACTGGCCGCTGTGCCCGGGGTTTTATCT
GGGAAATGCTCGCGGAAAGATGAGGAAGTGAAGGAGGAGAGGGTCGAAGG
AGGGAGGGAGGGAGGGAGGGCGGAAAAGGTCGACTTGGAGGCGGGCGGGG
AGTCAGTGGGTGCGTCGATGGAAAGGAAGGAAAAGATGGAGGGAGGGCTG
CTCGGGAGATGGTCATCGTCGTCTCCTGGGGCCTTGCATTCGATGGAGTC
GGCGATGACGCACTTGGCAAATGAGGAGGGAGAGCACTTTCAAGGAAGGA
TGCCGGAGCTGAAGGAGGAGGAGGAACTAGAACGTAGGTGGAGGGAGAGG
GAGCGGGAGAGGAAGGGGTTGTTGTCGTTTGGGGAAATGGTGCGGCGGCT
AGGGTCGTTCTTGCAGAGAGGAGAGAGGTCGGAGGTAGAGAAGGAAGGCG
AGGGGGAGGAAGTGAAGGAGGAATTGCCGTTGACTGCTTCGGTGCCCTGG
GCGCAGAAGGAAGGAGAAGGAGAAAGGAGGAAGGAGGAGTATGTGGAGAG
AGAGGAGAATGAGGTGGATGACTCAGACTTTGAGACTGATTACAGGGAGG
CGGAGGAGGGTGCAGATTTCGACGTCTATAGTAATTTAGATGTCGCGGCA
GATATTGAGGAGAATCGGCCACGGGACGAAGGGGGCGAGGAAGAAGCGGC
AGAAGGGCGGGATTCAAGAGAGGTGGAGGAGGGGAAGGACGTTGACGATG
ATGGGTGGAAATGAATAAATGGATGTATGTATAAAGAAAGGGAGTGAAAA
AAGAAGAAGGAATAGATGGTCTTGAAGGCAGAATTTGATATAGAGATGTT
AAGAAAGAGAGAGAAAGAAAAAGGCACAAGCCTTTGGATGCGATGCGATA
AGTCGGTGATCCTTTTGTAATGTAGGCTAACTTTTGTCATGAGTCGTGTT
TTTATTTATCCTGGCAGAAAGTGGGCAATTGTGTGTGTATAAATGTGTGC
GTCAAGCTGCTTGCTCGACTCCAGGTCGGAAGCCAAAGAAAGACATCTTA
AGGCAGCGGCCTGACATAAACCAAGACCGACAGAAGAAGTTGTTTTATTC
TGGAGAGCAAGCAGCCAGCTCCTCCGTTTCCGTCGTACCATCACTTTATT
TTATTATTGCCATTTCCGCACACACACACCACA
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protein sequence of jgi.p|Nanoce1779_2|611839

>mRNA_10792-protein ID=mRNA_10792-protein|Name=jgi.p|Nanoce1779_2|611839|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MERKEKMEGGLLGRWSSSSPGALHSMESAMTHLANEEGEHFQGRMPELKE
EEELERRWRERERERKGLLSFGEMVRRLGSFLQRGERSEVEKEGEGEEVK
EELPLTASVPWAQKEGEGERRKEEYVEREENEVDDSDFETDYREAEEGAD
FDVYSNLDVAADIEENRPRDEGGEEEAAEGRDSREVEEGKDVDDDGWK*
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mRNA from alignment at scaffold_59:49003..50185+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10792 ID=mRNA_10792|Name=jgi.p|Nanoce1779_2|611839|organism=Nannochloropsis oceanica|type=mRNA|length=1183bp|location=Sequence derived from alignment at scaffold_59:49003..50185+ (Nannochloropsis oceanica)
AGGAACTTAAACCTTTATCATTACTGGCCGCTGTGCCCGGGGTTTTATCT
GGGAAATGCTCGCGGAAAGATGAGGAAGTGAAGGAGGAGAGGGTCGAAGG
AGGGAGGGAGGGAGGGAGGGCGGAAAAGGTCGACTTGGAGGCGGGCGGGG
AGTCAGTGGGTGCGTCGATGGAAAGGAAGGAAAAGATGGAGGGAGGGCTG
CTCGGGAGATGGTCATCGTCGTCTCCTGGGGCCTTGCATTCGATGGAGTC
GGCGATGACGCACTTGGCAAATGAGGAGGGAGAGCACTTTCAAGGAAGGA
TGCCGGAGCTGAAGGAGGAGGAGGAACTAGAACGTAGGTGGAGGGAGAGG
GAGCGGGAGAGGAAGGGGTTGTTGTCGTTTGGGGAAATGGTGCGGCGGCT
AGGGTCGTTCTTGCAGAGAGGAGAGAGGTCGGAGGTAGAGAAGGAAGGCG
AGGGGGAGGAAGTGAAGGAGGAATTGCCGTTGACTGCTTCGGTGCCCTGG
GCGCAGAAGGAAGGAGAAGGAGAAAGGAGGAAGGAGGAGTATGTGGAGAG
AGAGGAGAATGAGGTGGATGACTCAGACTTTGAGACTGATTACAGGGAGG
CGGAGGAGGGTGCAGATTTCGACGTCTATAGTAATTTAGATGTCGCGGCA
GATATTGAGGAGAATCGGCCACGGGACGAAGGGGGCGAGGAAGAAGCGGC
AGAAGGGCGGGATTCAAGAGAGGTGGAGGAGGGGAAGGACGTTGACGATG
ATGGGTGGAAATGAATAAATGGATGTATGTATAAAGAAAGGGAGTGAAAA
AAGAAGAAGGAATAGATGGTCTTGAAGGCAGAATTTGATATAGAGATGTT
AAGAAAGAGAGAGAAAGAAAAAGGCACAAGCCTTTGGATGCGATGCGATA
AGTCGGTGATCCTTTTGTAATGTAGGCTAACTTTTGTCATGAGTCGTGTT
TTTATTTATCCTGGCAGAAAGTGGGCAATTGTGTGTGTATAAATGTGTGC
GTCAAGCTGCTTGCTCGACTCCAGGTCGGAAGCCAAAGAAAGACATCTTA
AGGCAGCGGCCTGACATAAACCAAGACCGACAGAAGAAGTTGTTTTATTC
TGGAGAGCAAGCAGCCAGCTCCTCCGTTTCCGTCGTACCATCACTTTATT
TTATTATTGCCATTTCCGCACACACACACCACA
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Coding sequence (CDS) from alignment at scaffold_59:49003..50185+

>mRNA_10792 ID=mRNA_10792|Name=jgi.p|Nanoce1779_2|611839|organism=Nannochloropsis oceanica|type=CDS|length=597bp|location=Sequence derived from alignment at scaffold_59:49003..50185+ (Nannochloropsis oceanica)
ATGGAAAGGAAGGAAAAGATGGAGGGAGGGCTGCTCGGGAGATGGTCATC
GTCGTCTCCTGGGGCCTTGCATTCGATGGAGTCGGCGATGACGCACTTGG
CAAATGAGGAGGGAGAGCACTTTCAAGGAAGGATGCCGGAGCTGAAGGAG
GAGGAGGAACTAGAACGTAGGTGGAGGGAGAGGGAGCGGGAGAGGAAGGG
GTTGTTGTCGTTTGGGGAAATGGTGCGGCGGCTAGGGTCGTTCTTGCAGA
GAGGAGAGAGGTCGGAGGTAGAGAAGGAAGGCGAGGGGGAGGAAGTGAAG
GAGGAATTGCCGTTGACTGCTTCGGTGCCCTGGGCGCAGAAGGAAGGAGA
AGGAGAAAGGAGGAAGGAGGAGTATGTGGAGAGAGAGGAGAATGAGGTGG
ATGACTCAGACTTTGAGACTGATTACAGGGAGGCGGAGGAGGGTGCAGAT
TTCGACGTCTATAGTAATTTAGATGTCGCGGCAGATATTGAGGAGAATCG
GCCACGGGACGAAGGGGGCGAGGAAGAAGCGGCAGAAGGGCGGGATTCAA
GAGAGGTGGAGGAGGGGAAGGACGTTGACGATGATGGGTGGAAATGA
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Synonyms
Publications