jgi.p|Nanoce1779_2|634161, mRNA_10791 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|634161
Unique NamemRNA_10791
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length621
Alignment locationscaffold_59:46083..47102 +

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Properties
Property NameValue
TranscriptId634247
TrackFilteredModels2
ProteinId634161
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_59supercontigscaffold_59:46083..47102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634161gene_10791Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634161mRNA_10791-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10791CDS_10791Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10791 ID=mRNA_10791|Name=jgi.p|Nanoce1779_2|634161|organism=Nannochloropsis oceanica|type=mRNA|length=621bp
ATTTTATACATTTATTTTTTATGTACCTTTCCTGTCTATGTGCTGGATAA
CATGGAGAGCCCTCGTCCCTTGACAATAGCGCATCAAAAAGAAAATAGAG
GCGGCGGCTGCTGTATGCACTCTTTATGTCCCACTTACCACAAACCTCCC
ACATCCTTCCCTCCCATACACCCTCGACACAGCATGGCACCATTTGTCGC
GATCCCCCCGCATAACCAGGAACGGGAGTCCTCGGGAAATCCCAACAACC
AATGGGACAATCAGATCCCTTCACCCGCTACGATTTCTCGCAATGACAGT
AAGGCCAGCTCGACGCACTCGGTTTCCACGAGGCACTTGAAACCTGTCAA
GGGGTTCCAGGACAGGGACGACTTTCACATTCTGCTCTTTGCCTCCTTCT
GTCTATGTTTCAATGCCGCCTTCACCAACACGGTGACCATGTCGTCTTTC
CTGGAATTAAGCACCGCTCACGTGACGGGCTTGGTGGCCAAAACCTCCAT
TGCCCTTGCTGACGCAGATTTTGATTACGTCTATCTCCCCGCCGTCACAT
TCCTCTTCTTCCTAGTGGGCTCCATCCTGAGTGGCTTCACCATCTCGTAC
GACACCTTTTATCTGGGTTAG
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protein sequence of jgi.p|Nanoce1779_2|634161

>mRNA_10791-protein ID=mRNA_10791-protein|Name=jgi.p|Nanoce1779_2|634161|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MESPRPLTIAHQKENRGGGCCMHSLCPTYHKPPTSFPPIHPRHSMAPFVA
IPPHNQERESSGNPNNQWDNQIPSPATISRNDSKASSTHSVSTRHLKPVK
GFQDRDDFHILLFASFCLCFNAAFTNTVTMSSFLELSTAHVTGLVAKTSI
ALADADFDYVYLPAVTFLFFLVGSILSGFTISYDTFYLG*
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mRNA from alignment at scaffold_59:46083..47102+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10791 ID=mRNA_10791|Name=jgi.p|Nanoce1779_2|634161|organism=Nannochloropsis oceanica|type=mRNA|length=1020bp|location=Sequence derived from alignment at scaffold_59:46083..47102+ (Nannochloropsis oceanica)
ATTTTATACATTTATTTTTTATGTACCTTTCCTGTCTATGTGCTGGATAA
CATGGAGAGCCCTCGTCCCTTGACAATAGCGCATCAAAAAGAAAATAGAG
GCGGCGGCTGCTGTATGCACTCTTTATGTCCCACTTACCACAAACCTCCC
ACATCCTTCCCTCCCATACACCCTCGACACAGCATGGCACCATTTGTCGC
GATCCCCCCGCATAACCAGGAACGGGAGTCCTCGGGAAATCCCAACAACC
AATGGGACAATCAGATCCCTTCACCCGCTACGATTTCTCGCAATGACAGT
AAGGCCAGCTCGACGCACTCGGTTTCCACGAGGCACTTGAAACCTGTCAA
GGGGTAAGTAAGGGAAGAATGTTGATGAAACTCGGCAGCGAATGACTGAA
ATATGGAGTCATACCTTCACCAATAAAACCCGTTCTCCCTCCCGCCCTCC
CTCCCCCTTCCCCTACCCTCGCAAAATTTAACTGTCCTTCACCCTGTTCC
CTCTCCCCGGTCCTCGCCTATCCGTCCAGGTTCCAGGACAGGGACGACTT
TCACATTCTGCTCTTTGCCTCCTTCTGTCTATGTTTCAATGCCGCCTTCA
CCAACACGGTGACCATGTCGTCTTTCCTGGAATTAAGCACCGCTCACGTG
ACGGGCTTGGTGAGCACGGAAGGAGGGGGGAAGGAAGGAAGGAAGGAGGG
AAGGGAAGGAGGGAGAGAAGGGAGGGGGAGGTATTGGCTCTCTCATTGAC
ACTCCGAGTAGAGAGGCTTGAGGACAAGACTGATACTAGGGCAGGCACGC
TCACATGGCCATCCTTCCTCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCTTCTCTCGTTCCCTTTCTCAGGTGGCCAAAACCTCCATT
GCCCTTGCTGACGCAGATTTTGATTACGTCTATCTCCCCGCCGTCACATT
CCTCTTCTTCCTAGTGGGCTCCATCCTGAGTGGCTTCACCATCTCGTACG
ACACCTTTTATCTGGGTTAG
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Coding sequence (CDS) from alignment at scaffold_59:46083..47102+

>mRNA_10791 ID=mRNA_10791|Name=jgi.p|Nanoce1779_2|634161|organism=Nannochloropsis oceanica|type=CDS|length=1710bp|location=Sequence derived from alignment at scaffold_59:46083..47102+ (Nannochloropsis oceanica)
ATGGAGAGCCCTCGTCCCTTGACAATAGCGCATCAAAAAGAAAATAGAGG
CGGCGGCTGCTGTATGCACTCTTTATGTCCCACTTACCACAAACCTCCCA
CATCCTTCCCTCCCATACACCCTCGACACAGCATGGCACCATTTGTCGCG
ATCCCCCCGCATAACCAGGAACGGGAGTCCTCGGGAAATCCCAACAACCA
ATGGGACAATCAGATCCCTTCACCCGCTACGATTTCTCGCAATGACAGTA
AGGCCAGCTCGACGCACTCGGTTTCCACGAGGCACTTGAAACCTGTCAAG
GGGTTCCAGGACAGGGACGACTTTCACATTCTGCTCTTTGCCTCCTTCTG
TCTATGTTTCAATGCCGCCTTCACCAACACGGTGACCATGTCGTCTTTCC
TGGAATTAAGCACCGCTCACGTGACGGGCTTGGTGGCCAAAACCTCCATT
GCCCTTGCTGACGCAGATTTTGATTACGTCTATCTCCCCGCCGTCACATT
CCTCTTCTTCCTAGTGGGCTCCATCCTGAGTGGCTTCACCATCTCGTACG
ACACCTTTTATCTGGGTTAGATGGAGAGCCCTCGTCCCTTGACAATAGCG
CATCAAAAAGAAAATAGAGGCGGCGGCTGCTGTATGCACTCTTTATGTCC
CACTTACCACAAACCTCCCACATCCTTCCCTCCCATACACCCTCGACACA
GCATGGCACCATTTGTCGCGATCCCCCCGCATAACCAGGAACGGGAGTCC
TCGGGAAATCCCAACAACCAATGGGACAATCAGATCCCTTCACCCGCTAC
GATTTCTCGCAATGACAGTAAGGCCAGCTCGACGCACTCGGTTTCCACGA
GGCACTTGAAACCTGTCAAGGGGTTCCAGGACAGGGACGACTTTCACATT
CTGCTCTTTGCCTCCTTCTGTCTATGTTTCAATGCCGCCTTCACCAACAC
GGTGACCATGTCGTCTTTCCTGGAATTAAGCACCGCTCACGTGACGGGCT
TGGTGGCCAAAACCTCCATTGCCCTTGCTGACGCAGATTTTGATTACGTC
TATCTCCCCGCCGTCACATTCCTCTTCTTCCTAGTGGGCTCCATCCTGAG
TGGCTTCACCATCTCGTACGACACCTTTTATCTGGGTTAGATGGAGAGCC
CTCGTCCCTTGACAATAGCGCATCAAAAAGAAAATAGAGGCGGCGGCTGC
TGTATGCACTCTTTATGTCCCACTTACCACAAACCTCCCACATCCTTCCC
TCCCATACACCCTCGACACAGCATGGCACCATTTGTCGCGATCCCCCCGC
ATAACCAGGAACGGGAGTCCTCGGGAAATCCCAACAACCAATGGGACAAT
CAGATCCCTTCACCCGCTACGATTTCTCGCAATGACAGTAAGGCCAGCTC
GACGCACTCGGTTTCCACGAGGCACTTGAAACCTGTCAAGGGGTTCCAGG
ACAGGGACGACTTTCACATTCTGCTCTTTGCCTCCTTCTGTCTATGTTTC
AATGCCGCCTTCACCAACACGGTGACCATGTCGTCTTTCCTGGAATTAAG
CACCGCTCACGTGACGGGCTTGGTGGCCAAAACCTCCATTGCCCTTGCTG
ACGCAGATTTTGATTACGTCTATCTCCCCGCCGTCACATTCCTCTTCTTC
CTAGTGGGCTCCATCCTGAGTGGCTTCACCATCTCGTACGACACCTTTTA
TCTGGGTTAG
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Synonyms
Publications