jgi.p|Nanoce1779_2|674858, mRNA_10790 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|674858
Unique NamemRNA_10790
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length678
Alignment locationscaffold_59:44180..45059 +

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Properties
Property NameValue
TranscriptId674944
TrackFilteredModels2
ProteinId674858
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_59supercontigscaffold_59:44180..45059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674858gene_10790Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674858mRNA_10790-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10790CDS_10790Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10790 ID=mRNA_10790|Name=jgi.p|Nanoce1779_2|674858|organism=Nannochloropsis oceanica|type=mRNA|length=678bp
GGAGGGATGGGAAGGGCGTACTCTTTTCCCGCGGTTTTACCCTCGATGGA
CTCGGCGGTGACACACGTGACAAATGAGGACGAAGAGCACTATCAGGCAC
GGGTCAGAAGGCTGGAGGAGGAGGAACAGGAGAAGAGGAGGAGGGAGAGG
GAGCGGAGGAGGAAGGGGTTGTTGTCATTTGGGGGGATGGTGCGGCGGTT
AGGATCGCCGTTACAGAGGAGGGACTCGATGGATTCGGCGTTGACGCACG
TGGCAAATGAGGATGAAGAGCACTATCAGGCACGGGTAAGAAGGCTGGAG
GAGGAGGAACAGGAGAAGAGGAGGAGGGAGAGGGAGCGGGAGAGGAAGGG
GTTGTTTTCGTTGGGGGGAGTGATGCAGCGGTTAGGGTCGTTCTTGCAGA
GAGGAGAGAGGTCGGAGGTGGAGAAGGAAAGGGAGGGGGAGGAAGTGAAG
GAGGAATTGTCGTTGACTGCTTCGGTGCCCCGGGCGCTGAAGGAAGGAGG
AGGAAGGCGGAAGGAGGGAAATGGAGAGGGAGTGGAAGAGGGGGGTGATG
AGTCGGATTGTGAGAGTGATTACAGGGAGGCGGAGAGGGATGCGGATTTC
GATGTTTATAGCGAAATGGATGTAGCGGCTGATATTCAGGAGGAGGGGGA
AAAGGAAGATGGGAGGGAGAGGGAATAG
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protein sequence of jgi.p|Nanoce1779_2|674858

>mRNA_10790-protein ID=mRNA_10790-protein|Name=jgi.p|Nanoce1779_2|674858|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MGRAYSFPAVLPSMDSAVTHVTNEDEEHYQARVRRLEEEEQEKRRRERER
RRKGLLSFGGMVRRLGSPLQRRDSMDSALTHVANEDEEHYQARVRRLEEE
EQEKRRRERERERKGLFSLGGVMQRLGSFLQRGERSEVEKEREGEEVKEE
LSLTASVPRALKEGGGRRKEGNGEGVEEGGDESDCESDYREAERDADFDV
YSEMDVAADIQEEGEKEDGRERE*
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mRNA from alignment at scaffold_59:44180..45059+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10790 ID=mRNA_10790|Name=jgi.p|Nanoce1779_2|674858|organism=Nannochloropsis oceanica|type=mRNA|length=880bp|location=Sequence derived from alignment at scaffold_59:44180..45059+ (Nannochloropsis oceanica)
GGAGGGATGGGAAGGGCGTACTCTTTTCCCGCGGTTTTACCCTCGATGGA
CTCGGCGGTGACACACGTGACAAATGAGGACGAAGAGCACTATCAGGCAC
GGGTCAGAAGGCTGGAGGAGGAGGAACAGGAGAAGAGGAGGAGGGAGAGG
GAGCGGAGGAGGAAGGGGTTGTTGTCATTTGGGGGGATGGTGCGGCGGTT
AGGATCGCCGTTACAGAGGAGGGAAGAGTCGGTAGAGGAGGGGGAGGAGG
AGGAGGAGGAGGGGGGGGGGTAGAAAGGAAGCGTTGAAGGACGATGGAAG
GGAGGGAGGGCGGAAGGGAGGCTCTGACTTGGAGGCGGGCAGGTTTTCAT
TAAATGAGACGGTGGGAGGGGAGGAAGGGAGGGAGGAGGGGAGTGAAGGG
GGGCCCTCCATTCCCGTTTCATTGCACTCGATGGATTCGGCGTTGACGCA
CGTGGCAAATGAGGATGAAGAGCACTATCAGGCACGGGTAAGAAGGCTGG
AGGAGGAGGAACAGGAGAAGAGGAGGAGGGAGAGGGAGCGGGAGAGGAAG
GGGTTGTTTTCGTTGGGGGGAGTGATGCAGCGGTTAGGGTCGTTCTTGCA
GAGAGGAGAGAGGTCGGAGGTGGAGAAGGAAAGGGAGGGGGAGGAAGTGA
AGGAGGAATTGTCGTTGACTGCTTCGGTGCCCCGGGCGCTGAAGGAAGGA
GGAGGAAGGCGGAAGGAGGGAAATGGAGAGGGAGTGGAAGAGGGGGGTGA
TGAGTCGGATTGTGAGAGTGATTACAGGGAGGCGGAGAGGGATGCGGATT
TCGATGTTTATAGCGAAATGGATGTAGCGGCTGATATTCAGGAGGAGGGG
GAAAAGGAAGATGGGAGGGAGAGGGAATAG
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Coding sequence (CDS) from alignment at scaffold_59:44180..45059+

>mRNA_10790 ID=mRNA_10790|Name=jgi.p|Nanoce1779_2|674858|organism=Nannochloropsis oceanica|type=CDS|length=1344bp|location=Sequence derived from alignment at scaffold_59:44180..45059+ (Nannochloropsis oceanica)
ATGGGAAGGGCGTACTCTTTTCCCGCGGTTTTACCCTCGATGGACTCGGC
GGTGACACACGTGACAAATGAGGACGAAGAGCACTATCAGGCACGGGTCA
GAAGGCTGGAGGAGGAGGAACAGGAGAAGAGGAGGAGGGAGAGGGAGCGG
AGGAGGAAGGGGTTGTTGTCATTTGGGGGGATGGTGCGGCGGTTAGGATC
GCCGTTACAGAGGAGGGACTCGATGGATTCGGCGTTGACGCACGTGGCAA
ATGAGGATGAAGAGCACTATCAGGCACGGGTAAGAAGGCTGGAGGAGGAG
GAACAGGAGAAGAGGAGGAGGGAGAGGGAGCGGGAGAGGAAGGGGTTGTT
TTCGTTGGGGGGAGTGATGCAGCGGTTAGGGTCGTTCTTGCAGAGAGGAG
AGAGGTCGGAGGTGGAGAAGGAAAGGGAGGGGGAGGAAGTGAAGGAGGAA
TTGTCGTTGACTGCTTCGGTGCCCCGGGCGCTGAAGGAAGGAGGAGGAAG
GCGGAAGGAGGGAAATGGAGAGGGAGTGGAAGAGGGGGGTGATGAGTCGG
ATTGTGAGAGTGATTACAGGGAGGCGGAGAGGGATGCGGATTTCGATGTT
TATAGCGAAATGGATGTAGCGGCTGATATTCAGGAGGAGGGGGAAAAGGA
AGATGGGAGGGAGAGGGAATAGATGGGAAGGGCGTACTCTTTTCCCGCGG
TTTTACCCTCGATGGACTCGGCGGTGACACACGTGACAAATGAGGACGAA
GAGCACTATCAGGCACGGGTCAGAAGGCTGGAGGAGGAGGAACAGGAGAA
GAGGAGGAGGGAGAGGGAGCGGAGGAGGAAGGGGTTGTTGTCATTTGGGG
GGATGGTGCGGCGGTTAGGATCGCCGTTACAGAGGAGGGACTCGATGGAT
TCGGCGTTGACGCACGTGGCAAATGAGGATGAAGAGCACTATCAGGCACG
GGTAAGAAGGCTGGAGGAGGAGGAACAGGAGAAGAGGAGGAGGGAGAGGG
AGCGGGAGAGGAAGGGGTTGTTTTCGTTGGGGGGAGTGATGCAGCGGTTA
GGGTCGTTCTTGCAGAGAGGAGAGAGGTCGGAGGTGGAGAAGGAAAGGGA
GGGGGAGGAAGTGAAGGAGGAATTGTCGTTGACTGCTTCGGTGCCCCGGG
CGCTGAAGGAAGGAGGAGGAAGGCGGAAGGAGGGAAATGGAGAGGGAGTG
GAAGAGGGGGGTGATGAGTCGGATTGTGAGAGTGATTACAGGGAGGCGGA
GAGGGATGCGGATTTCGATGTTTATAGCGAAATGGATGTAGCGGCTGATA
TTCAGGAGGAGGGGGAAAAGGAAGATGGGAGGGAGAGGGAATAG
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Synonyms
Publications