jgi.p|Nanoce1779_2|150670, mRNA_1079 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|150670
Unique NamemRNA_1079
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1625
Alignment locationscaffold_2:1169541..1171555 -

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Properties
Property NameValue
TranscriptId150756
TrackFilteredModels2
ProteinId150670
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1169541..1171555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|150670gene_1079Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|150670mRNA_1079-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1079CDS_1079Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1079 ID=mRNA_1079|Name=jgi.p|Nanoce1779_2|150670|organism=Nannochloropsis oceanica|type=mRNA|length=1625bp
AAAAGCTGGCGACCATATCATCAACACGTAGCTATGGCACATTTCTACCA
CTCCTCTCTTCTTCCTGGGAGGACAACGTCATGGCTGCCTCTTCGCCTCC
CCCTCTCTCGATGAAAAGCCTGGCCTTCCCCGTCATGTACAGATGTCTCC
TTCTTGCGAACAGCGAAGGTGAAATCTGCGGTGTCCGACTCGGGCTTGGC
CATAATGGGCATTCAGTCGTGTCTGAGGTCCTGAGTGAAAGTGTGCAAGA
ATTGTGCCAAGTTGCCGAAGGTGATATCCTGACTCACATAGACGGGGTGA
CTGTCTTGGGTGGTAGACATCGGGATCGGAGACAGGGAAAAGGGTGGGAA
GGAAAGGGAGGAGGAGTGGGGGGGGTCACTGCACGTCTGACCGTAGAGGA
GTTATTGCAGAGACAGCAGGTGCCTTACACCCGTCAAAGAATGAACAAGT
CCTCCCTACACCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGC
CACCACCACCACCACCAACACCGACAGTACCAGCATCATCCCTCATACTC
CCCCCCCCCCTCTTCTGTCATCGAACTTCGTCTCATCCGTGCCAGCAGTC
TGCCCAAATCTTCCACCTTCTCCCCTTCATTCTCCACCGCCTCCTCCCCT
CCCACCCCGTTTCGTCACCTCCCCGTTTATTATTACGAAACGCATCCCAA
GGACACCTTAGAGAGTATTGCCCAATTTTTCCACATCTCCCCTCAAGACA
TAAGGCGGAATAACCGGGACTATTTCCCCTCAGGCGAAAAAGCGGGAGGG
ATTCACCCGGGGATTTTGTTAAAGATACCGAACCCGACGTTTTTTGAGGA
GGAAGGGAGGGAGGATGAGGTAGGATGGAAGGAGGAATACGTGGAAGAGG
AGGAAGAGGACGAAGGCTCGTCATCGTTGTTGGCCTCCTCCCTATCCTCT
TCTTCCCCCTCCTCCTCCTCCTCTGCTTGCTCCTCCAGATGGCACAACGC
AAGGGCCGGCGTTTCGCCAACAAGCCAAAGAGTCGTTCCATCCTCCTCTT
TCATCCTCCCTCGCACACCCCCTTCCACCCCGCCATCCCTCCCCCGCTCC
CTCCCCCCCCTTCCCCTCCGTATCCTCCATGACGTGCGCGACAATGAATC
CGTCGATTCCCTCGCTCGTCGCTTGAATGTCCAAATCATGGATCTCCGAA
AGTGGAATCGCTCTTTGTTTCCTACGGGGGAGACCGTCAATTTCTTGCCA
GCGGGGACAAGGGTAGTGGTTTTTGCCGCCCCTGTCGCTGTGTCAGGGGG
GCCGGGTAGACAGTCAGAGAGGGAGAGAGGGCGAGAAGGAGTGGGGAAAA
CGAGGCCGATTCGGATCGTGGAGGGAGGGGAAGAAGGAGAGGTCGCCCCA
GTGAGTCGGAGAGGAGAGCGGGTGTGTTTGGGGTAGCATTTGATAAGCTG
GAAAAGTGGGGGAAATTACAGGGGGCGTCCAAAACAAGAAGAGAAGTGCC
TAGATGGAAGAGCGTTGGATGAGAGAGAGAATGGGAGAGAGGGTGTGTAT
AGGGTGTGAGAGAGGGAGAAAATGATGGAGGGGTATTTATCGAAAATGAG
GGGGAGGGAGGGAGAAATATGACAT
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protein sequence of jgi.p|Nanoce1779_2|150670

>mRNA_1079-protein ID=mRNA_1079-protein|Name=jgi.p|Nanoce1779_2|150670|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp
MAASSPPPLSMKSLAFPVMYRCLLLANSEGEICGVRLGLGHNGHSVVSEV
LSESVQELCQVAEGDILTHIDGVTVLGGRHRDRRQGKGWEGKGGGVGGVT
ARLTVEELLQRQQVPYTRQRMNKSSLHPQQQQQQQQQQQRHHHHHQHRQY
QHHPSYSPPPSSVIELRLIRASSLPKSSTFSPSFSTASSPPTPFRHLPVY
YYETHPKDTLESIAQFFHISPQDIRRNNRDYFPSGEKAGGIHPGILLKIP
NPTFFEEEGREDEVGWKEEYVEEEEEDEGSSSLLASSLSSSSPSSSSSAC
SSRWHNARAGVSPTSQRVVPSSSFILPRTPPSTPPSLPRSLPPLPLRILH
DVRDNESVDSLARRLNVQIMDLRKWNRSLFPTGETVNFLPAGTRVVVFAA
PVAVSGGPGRQSERERGREGVGKTRPIRIVEGGEEGEVAPVSRRGERVCL
G*
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mRNA from alignment at scaffold_2:1169541..1171555-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1079 ID=mRNA_1079|Name=jgi.p|Nanoce1779_2|150670|organism=Nannochloropsis oceanica|type=mRNA|length=2015bp|location=Sequence derived from alignment at scaffold_2:1169541..1171555- (Nannochloropsis oceanica)
AAAAGCTGGCGACCATATCATCAACACGTAGCTATGGCACATTTCTACCA
CTCCTCTCTTCTTCCTGGGAGGACAACGTCATGGCTGCCTCTTCGCCTCC
CCCTCTCTCGATGAAAAGCCTGGCCTTCCCCGTCATGTACAGGTGAGTAC
ATGAGCGAATAGAGGCAGACGGTAGAGGGTAAAACCTCTCATACCACATG
CTGGCTCATTAATTCTCATCCGTTTCGTTCTTTTCGGTACACCAAATCAG
TATGCTTAGCTGAAGTTTTGAAAGGAACCGCAGAAGAGGGGAGGAGATAG
TCAGGCGGTATTTGATGGATGTTCCCCGCGTGTGTGTCTTTCCCAGATGT
TTTGATTAAAGAAGGGCACTTCCCCCTTGCTTCTGTCCCTGCATGATCAT
GTATGAGTCCTGCTGGGCCTGTTAGATGGATCTCTTCGATATGCGTGGGA
AACCTCTTTCTCCATTTACAAACCCGCTATAGCTTCTATTCACTTCTCCT
CTCTTTCACTCTCCCGCTGGAACGTCCTTCAGATGTCTCCTTCTTGCGAA
CAGCGAAGGTGAAATCTGCGGTGTCCGACTCGGGCTTGGCCATAATGGGC
ATTCAGTCGTGTCTGAGGTCCTGAGTGAAAGTGTGCAAGAATTGTGCCAA
GTTGCCGAAGGTGATATCCTGACTCACATAGACGGGGTGACTGTCTTGGG
TGGTAGACATCGGGATCGGAGACAGGGAAAAGGGTGGGAAGGAAAGGGAG
GAGGAGTGGGGGGGGTCACTGCACGTCTGACCGTAGAGGAGTTATTGCAG
AGACAGCAGGTGCCTTACACCCGTCAAAGAATGAACAAGTCCTCCCTACA
CCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGCCACCACCACC
ACCACCAACACCGACAGTACCAGCATCATCCCTCATACTCCCCCCCCCCC
TCTTCTGTCATCGAACTTCGTCTCATCCGTGCCAGCAGTCTGCCCAAATC
TTCCACCTTCTCCCCTTCATTCTCCACCGCCTCCTCCCCTCCCACCCCGT
TTCGTCACCTCCCCGTTTATTATTACGAAACGCATCCCAAGGACACCTTA
GAGAGTATTGCCCAATTTTTCCACATCTCCCCTCAAGACATAAGGCGGAA
TAACCGGGACTATTTCCCCTCAGGCGAAAAAGCGGGAGGGATTCACCCGG
GGATTTTGTTAAAGATACCGAACCCGACGTTTTTTGAGGAGGAAGGGAGG
GAGGATGAGGTAGGATGGAAGGAGGAATACGTGGAAGAGGAGGAAGAGGA
CGAAGGCTCGTCATCGTTGTTGGCCTCCTCCCTATCCTCTTCTTCCCCCT
CCTCCTCCTCCTCTGCTTGCTCCTCCAGATGGCACAACGCAAGGGCCGGC
GTTTCGCCAACAAGCCAAAGAGTCGTTCCATCCTCCTCTTTCATCCTCCC
TCGCACACCCCCTTCCACCCCGCCATCCCTCCCCCGCTCCCTCCCCCCCC
TTCCCCTCCGTATCCTCCATGACGTGCGCGACAATGAATCCGTCGATTCC
CTCGCTCGTCGCTTGAATGTCCAAATCATGGATCTCCGAAAGTGGAATCG
CTCTTTGTTTCCTACGGGGGAGACCGTCAATTTCTTGCCAGCGGGGACAA
GGGTAGTGGTTTTTGCCGCCCCTGTCGCTGTGTCAGGGGGGCCGGGTAGA
CAGTCAGAGAGGGAGAGAGGGCGAGAAGGAGTGGGGAAAACGAGGCCGAT
TCGGATCGTGGAGGGAGGGGAAGAAGGAGAGGTCGCCCCAGTGAGTCGGA
GAGGAGAGCGGGTGTGTTTGGGGTAGCATTTGATAAGCTGGAAAAGTGGG
GGAAATTACAGGGGGCGTCCAAAACAAGAAGAGAAGTGCCTAGATGGAAG
AGCGTTGGATGAGAGAGAGAATGGGAGAGAGGGTGTGTATAGGGTGTGAG
AGAGGGAGAAAATGATGGAGGGGTATTTATCGAAAATGAGGGGGAGGGAG
GGAGAAATATGACAT
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Coding sequence (CDS) from alignment at scaffold_2:1169541..1171555-

>mRNA_1079 ID=mRNA_1079|Name=jgi.p|Nanoce1779_2|150670|organism=Nannochloropsis oceanica|type=CDS|length=2712bp|location=Sequence derived from alignment at scaffold_2:1169541..1171555- (Nannochloropsis oceanica)
ATGTCTCCTTCTTGCGAACAGCGAAGGTGAAATCTGCGGTGTCCGACTCG
GGCTTGGCCATAATGGGCATTCAGTCGTGTCTGAGGTCCTGAGTGAAAGT
GTGCAAGAATTGTGCCAAGTTGCCGAAGGTGATATCCTGACTCACATAGA
CGGGGTGACTGTCTTGGGTGGTAGACATCGGGATCGGAGACAGGGAAAAG
GGTGGGAAGGAAAGGGAGGAGGAGTGGGGGGGGTCACTGCACGTCTGACC
GTAGAGGAGTTATTGCAGAGACAGCAGGTGCCTTACACCCGTCAAAGAAT
GAACAAGTCCTCCCTACACCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCGCCACCACCACCACCACCAACACCGACAGTACCAGCATCATCCC
TCATACTCCCCCCCCCCCTCTTCTGTCATCGAACTTCGTCTCATCCGTGC
CAGCAGTCTGCCCAAATCTTCCACCTTCTCCCCTTCATTCTCCACCGCCT
CCTCCCCTCCCACCCCGTTTCGTCACCTCCCCGTTTATTATTACGAAACG
CATCCCAAGGACACCTTAGAGAGTATTGCCCAATTTTTCCACATCTCCCC
TCAAGACATAAGGCGGAATAACCGGGACTATTTCCCCTCAGGCGAAAAAG
CGGGAGGGATTCACCCGGGGATTTTGTTAAAGATACCGAACCCGACGTTT
TTTGAGGAGGAAGGGAGGGAGGATGAGGTAGGATGGAAGGAGGAATACGT
GGAAGAGGAGGAAGAGGACGAAGGCTCGTCATCGTTGTTGGCCTCCTCCC
TATCCTCTTCTTCCCCCTCCTCCTCCTCCTCTGCTTGCTCCTCCAGATGG
CACAACGCAAGGGCCGGCGTTTCGCCAACAAGCCAAAGAGTCGTTCCATC
CTCCTCTTTCATCCTCCCTCGCACACCCCCTTCCACCCCGCCATCCCTCC
CCCGCTCCCTCCCCCCCCTTCCCCTCCGTATCCTCCATGACGTGCGCGAC
AATGAATCCGTCGATTCCCTCGCTCGTCGCTTGAATGTCCAAATCATGGA
TCTCCGAAAGTGGAATCGCTCTTTGTTTCCTACGGGGGAGACCGTCAATT
TCTTGCCAGCGGGGACAAGGGTAGTGGTTTTTGCCGCCCCTGTCGCTGTG
TCAGGGGGGCCGGGTAGACAGTCAGAGAGGGAGAGAGGGCGAGAAGGAGT
GGGGAAAACGAGGCCGATTCGGATCGTGGAGGGAGGGGAAGAAGGAGAGG
TCGCCCCAGTGAGTCGGAGAGGAGAGCGGGTGTGTTTGGGGTAGATGGCT
GCCTCTTCGCCTCCCCCTCTCTCGATGAAAAGCCTGGCCTTCCCCGTCAT
GTACAGATGTCTCCTTCTTGCGAACAGCGAAGGTGAAATCTGCGGTGTCC
GACTCGGGCTTGGCCATAATGGGCATTCAGTCGTGTCTGAGGTCCTGAGT
GAAAGTGTGCAAGAATTGTGCCAAGTTGCCGAAGGTGATATCCTGACTCA
CATAGACGGGGTGACTGTCTTGGGTGGTAGACATCGGGATCGGAGACAGG
GAAAAGGGTGGGAAGGAAAGGGAGGAGGAGTGGGGGGGGTCACTGCACGT
CTGACCGTAGAGGAGTTATTGCAGAGACAGCAGGTGCCTTACACCCGTCA
AAGAATGAACAAGTCCTCCCTACACCCGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCGCCACCACCACCACCACCAACACCGACAGTACCAGCAT
CATCCCTCATACTCCCCCCCCCCCTCTTCTGTCATCGAACTTCGTCTCAT
CCGTGCCAGCAGTCTGCCCAAATCTTCCACCTTCTCCCCTTCATTCTCCA
CCGCCTCCTCCCCTCCCACCCCGTTTCGTCACCTCCCCGTTTATTATTAC
GAAACGCATCCCAAGGACACCTTAGAGAGTATTGCCCAATTTTTCCACAT
CTCCCCTCAAGACATAAGGCGGAATAACCGGGACTATTTCCCCTCAGGCG
AAAAAGCGGGAGGGATTCACCCGGGGATTTTGTTAAAGATACCGAACCCG
ACGTTTTTTGAGGAGGAAGGGAGGGAGGATGAGGTAGGATGGAAGGAGGA
ATACGTGGAAGAGGAGGAAGAGGACGAAGGCTCGTCATCGTTGTTGGCCT
CCTCCCTATCCTCTTCTTCCCCCTCCTCCTCCTCCTCTGCTTGCTCCTCC
AGATGGCACAACGCAAGGGCCGGCGTTTCGCCAACAAGCCAAAGAGTCGT
TCCATCCTCCTCTTTCATCCTCCCTCGCACACCCCCTTCCACCCCGCCAT
CCCTCCCCCGCTCCCTCCCCCCCCTTCCCCTCCGTATCCTCCATGACGTG
CGCGACAATGAATCCGTCGATTCCCTCGCTCGTCGCTTGAATGTCCAAAT
CATGGATCTCCGAAAGTGGAATCGCTCTTTGTTTCCTACGGGGGAGACCG
TCAATTTCTTGCCAGCGGGGACAAGGGTAGTGGTTTTTGCCGCCCCTGTC
GCTGTGTCAGGGGGGCCGGGTAGACAGTCAGAGAGGGAGAGAGGGCGAGA
AGGAGTGGGGAAAACGAGGCCGATTCGGATCGTGGAGGGAGGGGAAGAAG
GAGAGGTCGCCCCAGTGAGTCGGAGAGGAGAGCGGGTGTGTTTGGGGTAG
ATGGCTGCCTCTTCGCCTCCCCCTCTCTCGATGAAAAGCCTGGCCTTCCC
CGTCATGTACAG
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Synonyms
Publications