jgi.p|Nanoce1779_2|575230, mRNA_1078 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575230
Unique Name	mRNA_1078
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1659
Alignment location	scaffold_2:1167194..1168995 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	575316
Track	FilteredModels2
ProteinId	575230

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1167194..1168995 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575230	gene_1078	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575230	mRNA_1078-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1078	CDS_1078	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1167194..1168995+
coding sequence from alignment at scaffold_2:1167194..1168995+

mRNA sequence

>mRNA_1078 ID=mRNA_1078|Name=jgi.p|Nanoce1779_2|575230|organism=Nannochloropsis oceanica|type=mRNA|length=1659bp
CGATGTGCCTCGTGGCTGCGAGCTGCCGCCTCTACCTCTGCCATGACCTG
ATAGTGTTATAGGAGAAGAAGTAGGCAAATTAGTGGTGGTGCGGTCCGTG
TGGAAGCGGCAGACGAAGGAAATAGAGCGGGGTTGTGGTGGGGCTTGGGT
CACGAAAATTTGTAGGTGCCATCTATGTTTTGTCGGGGAAATAGGGCCTT
TTGAAACAAGGGCTAGTACACTACGTCCTTGTCCAGATAGTGACGTATCA
TGCACGCATACTCTTTTCTGGTCCAGGTGGTGACGTATCAGGCACGCTCA
AGACAAGTGCCCGGTCAAATTCAACGCGTGCCTTGGCTCGGTGGGCAGCG
GATAAGAGTCTTCTCTGCATGTTGGAGCCGGGAGGTCAAGAAGGAACGCA
ACTCTTTTGCTTCTTATTCGCACCAATCCACCACTCCGCCTTCACAGACT
GATCTTTGACAATTATGGTAACAAAGCGCGGGACCGTCAACCTGAGTGAT
TTGATGAAGAGAAAGGTGAGAGGCTGGGGATGGGAAGGCCAAGGCTTGTT
GGGGTGTGGGGTTCGAAGAGGATAGTGGTAGTGAAGGGCATGCAGTGTTC
TGTGGCAGCGGAATATACATCTTCTTGCTGCAGGCATACATTAAGATTGT
CACATCGATGTTGATGCATGATGCGTCTCTATTATTTTCCCGCGAGCTCG
CGCTAGAGCTGTCCTCTCCAATCCTCTCCAGCCTCGTGGCTCCGCGCCGC
ATCTCCTGCTATAACCCCACCTAACCGCAGCGCAGCTTCGATCAAAATAG
CCTAGATCATTTGTTTTACAAGGAACTATTTTCCACGATGCTGTCAACTA
TCTATGGCTGTGCACTCATCCTTTCAAATAATTTAGGCCCCACGCACGGA
CATGGACGGTGAGGACAGTAGCGTTCAAGTCCCCGCAGAAACCTGTAGAA
ATTCCTCAAATGCAGCGGACGAAGCGGAAGAAGATGGCATCAAAGCAATT
TATGCCGTACAAACAGAACTGGCTGCGTTGGAAACAGCACAGGCAGAAGG
GATTTTACAGATAATCAAGAAGTATAGCGAGCAAAAACTGCCCGTGTATG
CGCGCCGACAAAAGGAGATAGAACAGGTGCCTGAGTTCTGGTTCCGCGTC
TTGCTTGTGCATCCCTCAACGGGCGAGCACATAACCGACCTGGACCAAGG
AGCTCTCCGCCACCTCACCAAACTAGAGGTGGTAGACGTGAAGAAGGATG
CGAATGAGGAAGCAGCCGTGGGAGCAGGAGGGACAGTAACGATGCCTGAT
TACCGGGTCGACTTCCATTTCTCGCCGAACGTGTACTTTACGAACGCAGT
GTTGTGGAAGGAATATCGCTTTCGAGACCATGAGGCTACCGTTACATCCT
CTGAGATAGACTGGAAAGATACGGTGGGAGCAAAGGATTTGAAAGCCACG
TTGGTCACCACGTTGATGGCGCAAGACCCCATGCCGAAGGACGTGGAGCC
CTCGTTCTTTTCGATTTTTCATGCCGAGGACCGCGATCTGGAAATGGGGG
AAGTGTTAAAGAATGAGGTGTGGCGGGATCCGGTGGGTATTTATATGAGT
GCAGAGTTTGAGGAGGAGGAGGAGGAGGAGGAGGGAGGGGAGGAAGAGAA
AGGGTGAGC

protein sequence of jgi.p|Nanoce1779_2|575230

>mRNA_1078-protein ID=mRNA_1078-protein|Name=jgi.p|Nanoce1779_2|575230|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp
MDGEDSSVQVPAETCRNSSNAADEAEEDGIKAIYAVQTELAALETAQAEG
ILQIIKKYSEQKLPVYARRQKEIEQVPEFWFRVLLVHPSTGEHITDLDQG
ALRHLTKLEVVDVKKDANEEAAVGAGGTVTMPDYRVDFHFSPNVYFTNAV
LWKEYRFRDHEATVTSSEIDWKDTVGAKDLKATLVTTLMAQDPMPKDVEP
SFFSIFHAEDRDLEMGEVLKNEVWRDPVGIYMSAEFEEEEEEEEGGEEEK
G*

mRNA from alignment at scaffold_2:1167194..1168995+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1078 ID=mRNA_1078|Name=jgi.p|Nanoce1779_2|575230|organism=Nannochloropsis oceanica|type=mRNA|length=1802bp|location=Sequence derived from alignment at scaffold_2:1167194..1168995+ (Nannochloropsis oceanica)
CGATGTGCCTCGTGGCTGCGAGCTGCCGCCTCTACCTCTGCCATGACCTG
ATAGTGTTATAGGAGAAGAAGTAGGCAAATTAGTGGTGGTGCGGTCCGTG
TGGAAGCGGCAGACGAAGGAAATAGAGCGGGGTTGTGGTGGGGCTTGGGT
CACGAAAATTTGTAGGTGCCATCTATGTTTTGTCGGGGAAATAGGGCCTT
TTGAAACAAGGGCTAGTACACTACGTCCTTGTCCAGATAGTGACGTATCA
TGCACGCATACTCTTTTCTGGTCCAGGTGGTGACGTATCAGGCACGCTCA
AGACAAGTGCCCGGTCAAATTCAACGCGTGCCTTGGCTCGGTGGGCAGCG
GATAAGAGTCTTCTCTGCATGTTGGAGCCGGGAGGTCAAGAAGGAACGCA
ACTCTTTTGCTTCTTATTCGCACCAATCCACCACTCCGCCTTCACAGACT
GATCTTTGACAATTATGGTAACAAAGCGCGGGACCGTCAACCTGAGTGAT
TTGATGAAGAGAAAGGTGAGAGGCTGGGGATGGGAAGGCCAAGGCTTGTT
GGGGTGTGGGGTTCGAAGAGGATAGTGGTAGTGAAGGGCATGCAGTGTTC
TGTGGCAGCGGAATATACATCTTCTTGCTGCAGGCATACATTAAGATTGT
CACATCGATGTTGATGCATGATGCGTCTCTATTATTTTCCCGCGAGCTCG
CGCTAGAGCTGTCCTCTCCAATCCTCTCCAGCCTCGTGGCTCCGCGCCGC
ATCTCCTGCTATAACCCCACCTAACCGCAGCGCAGCTTCGATCAAAATAG
CCTAGATCATTTGTTTTACAAGGAACTATTTTCCACGATGCTGTCAACTA
TCTATGGCTGTGCACTCATCCTTTCAAATAATTTAGGCCCCACGCACGGA
CATGGACGGTGAGGACAGTAGCGTTCAAGTCCCCGCAGAAACCTGTAGAA
ATTCCTCAAATGCAGCGGACGAAGCGGAAGAAGATGGCATCAAAGCAATT
TATGCCGTACAAACAGAACTGGCTGCGTTGGAAACAGCACAGGCAGAAGG
GATTTTACAGATAATCAAGAAGTATAGCGAGCAAAAACTGCCCGTGTATG
CGCGCCGACAAAAGGAGATAGAACAGGTATGTATGCATGGGAATTTAAAG
AGATTAAGAAGGTTCAAATAAATGAATAATCAACTTAGTTAGTAAACAAG
TTGATAAATGAATCAAAAAGCGAAAAAAGAAAAACGTCCTCAATGCTCAA
GCTTGCACTCTTCCCTTAGGTGCCTGAGTTCTGGTTCCGCGTCTTGCTTG
TGCATCCCTCAACGGGCGAGCACATAACCGACCTGGACCAAGGAGCTCTC
CGCCACCTCACCAAACTAGAGGTGGTAGACGTGAAGAAGGATGCGAATGA
GGAAGCAGCCGTGGGAGCAGGAGGGACAGTAACGATGCCTGATTACCGGG
TCGACTTCCATTTCTCGCCGAACGTGTACTTTACGAACGCAGTGTTGTGG
AAGGAATATCGCTTTCGAGACCATGAGGCTACCGTTACATCCTCTGAGAT
AGACTGGAAAGATACGGTGGGAGCAAAGGATTTGAAAGCCACGTTGGTCA
CCACGTTGATGGCGCAAGACCCCATGCCGAAGGACGTGGAGCCCTCGTTC
TTTTCGATTTTTCATGCCGAGGACCGCGATCTGGAAATGGGGGAAGTGTT
AAAGAATGAGGTGTGGCGGGATCCGGTGGGTATTTATATGAGTGCAGAGT
TTGAGGAGGAGGAGGAGGAGGAGGAGGGAGGGGAGGAAGAGAAAGGGTGA
GC

Coding sequence (CDS) from alignment at scaffold_2:1167194..1168995+

>mRNA_1078 ID=mRNA_1078|Name=jgi.p|Nanoce1779_2|575230|organism=Nannochloropsis oceanica|type=CDS|length=1512bp|location=Sequence derived from alignment at scaffold_2:1167194..1168995+ (Nannochloropsis oceanica)
ATGGACGGTGAGGACAGTAGCGTTCAAGTCCCCGCAGAAACCTGTAGAAA
TTCCTCAAATGCAGCGGACGAAGCGGAAGAAGATGGCATCAAAGCAATTT
ATGCCGTACAAACAGAACTGGCTGCGTTGGAAACAGCACAGGCAGAAGGG
ATTTTACAGATAATCAAGAAGTATAGCGAGCAAAAACTGCCCGTGTATGC
GCGCCGACAAAAGGAGATAGAACAGGTGCCTGAGTTCTGGTTCCGCGTCT
TGCTTGTGCATCCCTCAACGGGCGAGCACATAACCGACCTGGACCAAGGA
GCTCTCCGCCACCTCACCAAACTAGAGGTGGTAGACGTGAAGAAGGATGC
GAATGAGGAAGCAGCCGTGGGAGCAGGAGGGACAGTAACGATGCCTGATT
ACCGGGTCGACTTCCATTTCTCGCCGAACGTGTACTTTACGAACGCAGTG
TTGTGGAAGGAATATCGCTTTCGAGACCATGAGGCTACCGTTACATCCTC
TGAGATAGACTGGAAAGATACGGTGGGAGCAAAGGATTTGAAAGCCACGT
TGGTCACCACGTTGATGGCGCAAGACCCCATGCCGAAGGACGTGGAGCCC
TCGTTCTTTTCGATTTTTCATGCCGAGGACCGCGATCTGGAAATGGGGGA
AGTGTTAAAGAATGAGGTGTGGCGGGATCCGGTGGGTATTTATATGAGTG
CAGAGTTTGAGGAGGAGGAGGAGGAGGAGGAGGGAGGGGAGGAAGAGAAA
GGGTGAATGGACGGTGAGGACAGTAGCGTTCAAGTCCCCGCAGAAACCTG
TAGAAATTCCTCAAATGCAGCGGACGAAGCGGAAGAAGATGGCATCAAAG
CAATTTATGCCGTACAAACAGAACTGGCTGCGTTGGAAACAGCACAGGCA
GAAGGGATTTTACAGATAATCAAGAAGTATAGCGAGCAAAAACTGCCCGT
GTATGCGCGCCGACAAAAGGAGATAGAACAGGTGCCTGAGTTCTGGTTCC
GCGTCTTGCTTGTGCATCCCTCAACGGGCGAGCACATAACCGACCTGGAC
CAAGGAGCTCTCCGCCACCTCACCAAACTAGAGGTGGTAGACGTGAAGAA
GGATGCGAATGAGGAAGCAGCCGTGGGAGCAGGAGGGACAGTAACGATGC
CTGATTACCGGGTCGACTTCCATTTCTCGCCGAACGTGTACTTTACGAAC
GCAGTGTTGTGGAAGGAATATCGCTTTCGAGACCATGAGGCTACCGTTAC
ATCCTCTGAGATAGACTGGAAAGATACGGTGGGAGCAAAGGATTTGAAAG
CCACGTTGGTCACCACGTTGATGGCGCAAGACCCCATGCCGAAGGACGTG
GAGCCCTCGTTCTTTTCGATTTTTCATGCCGAGGACCGCGATCTGGAAAT
GGGGGAAGTGTTAAAGAATGAGGTGTGGCGGGATCCGGTGGGTATTTATA
TGAGTGCAGAGTTTGAGGAGGAGGAGGAGGAGGAGGAGGGAGGGGAGGAA
GAGAAAGGGTGA

Synonyms

Publications