jgi.p|Nanoce1779_2|356098, mRNA_10778 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|356098
Unique Name	mRNA_10778
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1043
Alignment location	scaffold_59:4570..6782 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	356184
Track	FilteredModels2
ProteinId	356098

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_59	supercontig	scaffold_59:4570..6782 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|356098	gene_10778	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|356098	mRNA_10778-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10778	CDS_10778	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_59:4570..6782+
coding sequence from alignment at scaffold_59:4570..6782+

mRNA sequence

>mRNA_10778 ID=mRNA_10778|Name=jgi.p|Nanoce1779_2|356098|organism=Nannochloropsis oceanica|type=mRNA|length=1043bp
AGACCTGCAGGCATGCGTTGTGCAAATTCGTCCGCAACTCGTGCAAACAC
CCAGCCCGTTGTCGTTAACCTCTTCATTTCATTCCGACATAGCCAGGTCT
CACCGCTCACGCCGTCCTCACTAGCCACACACAGAACCGCACCAGCAGCA
TAAGGAGGAGCTGCTTAATCCTGGAACGATGCCGCCCATGTCCCTATCCT
ATCGTTACCGGCCACCAGGCGCGACACACACCCCTTTCCGATTTTCCTAT
CGCCTGCTTAACGTTGCCCTCCTCGCCTGCTTCCTGTCCTTGTCCGACGC
CTTCGTCCCTACCACACCATACCCGGTGGATTTCCGTCGAAAGGCATCTT
CCCGCTCTGCTGGCGTCAAGACAGCGGACAGTATTTCCCGCCTGTCTCCG
CTCCGTGCCCAGGACGCGGCCAAAGTGGAAGACCGTATCGATGACAACAA
GCAGATCACCTCAGGCGCGGCGCGTGACGTGGATCAGGGGGCTGTCTTGA
GCGACGCGAATGCTGCATTCGCCTATAGCACAGCCGAGGAGCGGAGGGCG
GCCTCGGAGCCAGTGGGAGACGAGCCCCAGGGCCTAAAAGTGGTGCTAAC
GGGCAAGCCGTGCTCGGGCAAGGGCACGCAAGCGCCAATGATGGGCCGCA
AGTACCGGATGGTTCACATCGCTACCGGTAACTTGCTCAGGGCCGAGATC
CAGGCGGAGACGGAGTTAGGCCTGATAGCGAAGGAGCAGATGGAGAAGGG
GGAGCTGCTCCCGGACGAGCTGATCATCGCCCTTGTCAAGAAACGGGTCT
CGGCGGACGACTGTCGGCGTAACGGCTGGATCTTGGACGGTTTCCCCCCG
CACAGTTCGACAAGCCAAGCTTATGCAGAAAGCGGGCATTGAGCCTGACG
CCGTGATCGAGCTCGACCGCCCGGACGAGCTCGTGGAAGAGTGGTGCCTC
GGCCGCTACCACGACGCCGCCACTGGTGTGATTTATCATCCCAAATTTAA
CCCTCCCCCCCCCGAGATCGTCCCTCGGTTGATCTGGCGCACG

protein sequence of jgi.p|Nanoce1779_2|356098

>mRNA_10778-protein ID=mRNA_10778-protein|Name=jgi.p|Nanoce1779_2|356098|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MPPMSLSYRYRPPGATHTPFRFSYRLLNVALLACFLSLSDAFVPTTPYPV
DFRRKASSRSAGVKTADSISRLSPLRAQDAAKVEDRIDDNKQITSGAARD
VDQGAVLSDANAAFAYSTAEERRAASEPVGDEPQGLKVVLTGKPCSGKGT
QAPMMGRKYRMVHIATGNLLRAEIQAETELGLIAKEQMEKGELLPDELII
ALVKKRVSADDCRRNGWILDGFPPHSSTSQAYAESGH*

mRNA from alignment at scaffold_59:4570..6782+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10778 ID=mRNA_10778|Name=jgi.p|Nanoce1779_2|356098|organism=Nannochloropsis oceanica|type=mRNA|length=2213bp|location=Sequence derived from alignment at scaffold_59:4570..6782+ (Nannochloropsis oceanica)
AGACCTGCAGGCATGCGTTGTGCAAATTCGTCCGCAACTCGTGCAAACAC
CCAGCCCGTTGTCGTTAACCTCTTCATTTCATTCCGACATAGCCAGGTCT
CACCGCTCACGCCGTCCTCACTAGCCACACACAGAACCGCACCAGCAGCA
TAAGGAGGAGCTGCTTAATCCTGGAACGATGCCGCCCATGTCCCTATCCT
ATCGTTACCGGCCACCAGGCGCGACACACACCCCTTTCCGATTTTCCTAT
CGCCTGCTTAACGTTGCCCTCCTCGCCTGCTTCCTGTCCTTGTCCGACGC
CTTCGTCCCTACCACACCATACCCGGTGGATTTCCGTCGAAAGGCATCTT
CCCGCTCTGCTGGCGTCAAGACAGGTGCGTGATGGCTCGCCTGATCCAAT
TTGTGCAGGACGTTTGTCCATCACATCGGCTCCGGCACGACGAGATGAGG
TGGCATGCTCACACGTTTCGTCCCTCTACCTGACCGCCTCTCTTCATTAT
GTCATTATTATGCCAACTTGCTTATCTTCCGTTCCATCCATCTGTTCACT
CCTTTTCTCGACAATATTCCCCTTTCTCGTAGCGGACAGTATTTCCCGCC
TGTCTCCGCTCCGTGCCCAGGACGCGGCCAAAGTGGAAGACCGTATCGAT
GACAACAAGGTAGGGCGGAGGGATGAGTGGAAGGAGGGAATGGATTTTGA
TGTATGAGCGTACAACAACGAGTAAGCTTCCCATGTTCACGTCTCCCACC
CTTTCTCCCTTTCTTCCTTCCTTCCCTTCAGCAGATCACCTCAGGCGCGG
CGCGTGACGTGGATCAGGGGGCTGTCTTGAGCGACGCGAATGCTGCATTC
GCCTATAGCACAGCCGAGGAGCGGAGGGCGGCCTCGGAGCCAGTGGGAGG
TAGGGAGGGAGAGAAAGGAGGGAAGGGAGGGAATGCATGGAGGAAAAGCA
GGGAGGGAAAAGGTGGAAGAAACGGGTTGAGCGGCTAGCGTCTTCTCCAA
GGGACGAAGCTGTCGAGAAAGCGCATGACTCACCCTTCCCTCCCTCCCTC
CGTCCCAGACGAGCCCCAGGGCCTAAAAGTGGTGCTAACGGGCAAGCCGT
GCTCGGGCAAGGGCACGCAAGCGCCAATGATGGGCCGCAAGTACCGGATG
GTTCACATCGCTACCGGTGCGTGCGGCGTCGGCCCGCCCTCCCTCCCTCC
CTTCCTTCCCCCCTCCCACCTACCCTCCCTCCCTCAATTCGGTCAATCTC
GCCGTGTGCGACCCACCTCCTTCCCCCCCTCTCTTCCGTCCTTTTATACA
CCCATCCCTCCCTCCCTCGCTCGCTCCCTCCCTTCCCCCCCCGTATCCAT
CCAGGTAACTTGCTCAGGGCCGAGATCCAGGCGGAGACGGAGTTAGGCCT
GATAGCGAAGGAGCAGATGGAGAAGGGGGAGCTGCTCCCGGACGAGCTGA
TCGTAAGGGGAAGGAGGGAGAGAGGGAGGGAGGGAAAGAGGGAGAGAGGG
AGTCTGATTGGGGTTTCATTAAGTAGTACATTTGCGCCTGTTAGCGTGTA
CGGCCCTTGGTGGTGGTGTTGTCGTCATCCCATCCACTCTCTTTCTTGCT
CTCCCTTCCTCCCTCCCTCCCTCACTCCCTCCCTCCAGATCGCCCTTGTC
AAGAAACGGGTCTCGGCGGACGACTGTCGGCGTAACGGCTGGATCTTGGA
CGGTTTCCCCCCGCACAGTTCGACAAGCCAAGCTTATGCAGGTACACCTA
TCCCTCCCTCCATCCCTCCCTCCCTCCCTCGCTCCATCCCTCCCTGCTCC
CTCCCTCGCTCCCTCCCTCTTTCCCTTTCTTCATCCTCTTGTCTATCTCC
AAGGACCCAGGAGGCCTCGCGCCTGCCCTCTCACGTCTTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCCCCCCTCCCTCGCTCCTCTAGAAAGCGGGC
ATTGAGCCTGACGCCGTGATCGAGCTCGACCGCCCGGACGAGCTCGTGGA
AGAGTGGTGCCTCGGCCGCTACCACGACGCCGCCACTGGTCGGTCCCTCC
CTCCCTCCCTCCCTCTCTCGCCAATCTGTACTCACACGCTGACCCTTCCT
ACCTCCCCCTCCCTCTCCCCCCCCCCCTCCTTTCTGCGGCCTTAGGTGTG
ATTTATCATCCCAAATTTAACCCTCCCCCCCCCGAGATCGTCCCTCGGTT
GATCTGGCGCACG

Coding sequence (CDS) from alignment at scaffold_59:4570..6782+

>mRNA_10778 ID=mRNA_10778|Name=jgi.p|Nanoce1779_2|356098|organism=Nannochloropsis oceanica|type=CDS|length=4998bp|location=Sequence derived from alignment at scaffold_59:4570..6782+ (Nannochloropsis oceanica)
ATGCCGCCCATGTCCCTATCCTATCGTTACCGGCCACCAGGCGCGACACA
CACCCCTTTCCGATTTTCCTATCGCCTGCTTAACGTTGCCCTCCTCGCCT
GCTTCCTGTCCTTGTCCGACGCCTTCGTCCCTACCACACCATACCCGGTG
GATTTCCGTCGAAAGGCATCTTCCCGCTCTGCTGGCGTCAAGACAGCGGA
CAGTATTTCCCGCCTGTCTCCGCTCCGTGCCCAGGACGCGGCCAAAGTGG
AAGACCGTATCGATGACAACAAGCAGATCACCTCAGGCGCGGCGCGTGAC
GTGGATCAGGGGGCTGTCTTGAGCGACGCGAATGCTGCATTCGCCTATAG
CACAGCCGAGGAGCGGAGGGCGGCCTCGGAGCCAGTGGGAGACGAGCCCC
AGGGCCTAAAAGTGGTGCTAACGGGCAAGCCGTGCTCGGGCAAGGGCACG
CAAGCGCCAATGATGGGCCGCAAGTACCGGATGGTTCACATCGCTACCGG
TAACTTGCTCAGGGCCGAGATCCAGGCGGAGACGGAGTTAGGCCTGATAG
CGAAGGAGCAGATGGAGAAGGGGGAGCTGCTCCCGGACGAGCTGATCATC
GCCCTTGTCAAGAAACGGGTCTCGGCGGACGACTGTCGGCGTAACGGCTG
GATCTTGGACGGTTTCCCCCCGCACAGTTCGACAAGCCAAGCTTATGCAG
AAAGCGGGCATTGAATGCCGCCCATGTCCCTATCCTATCGTTACCGGCCA
CCAGGCGCGACACACACCCCTTTCCGATTTTCCTATCGCCTGCTTAACGT
TGCCCTCCTCGCCTGCTTCCTGTCCTTGTCCGACGCCTTCGTCCCTACCA
CACCATACCCGGTGGATTTCCGTCGAAAGGCATCTTCCCGCTCTGCTGGC
GTCAAGACAGCGGACAGTATTTCCCGCCTGTCTCCGCTCCGTGCCCAGGA
CGCGGCCAAAGTGGAAGACCGTATCGATGACAACAAGCAGATCACCTCAG
GCGCGGCGCGTGACGTGGATCAGGGGGCTGTCTTGAGCGACGCGAATGCT
GCATTCGCCTATAGCACAGCCGAGGAGCGGAGGGCGGCCTCGGAGCCAGT
GGGAGACGAGCCCCAGGGCCTAAAAGTGGTGCTAACGGGCAAGCCGTGCT
CGGGCAAGGGCACGCAAGCGCCAATGATGGGCCGCAAGTACCGGATGGTT
CACATCGCTACCGGTAACTTGCTCAGGGCCGAGATCCAGGCGGAGACGGA
GTTAGGCCTGATAGCGAAGGAGCAGATGGAGAAGGGGGAGCTGCTCCCGG
ACGAGCTGATCATCGCCCTTGTCAAGAAACGGGTCTCGGCGGACGACTGT
CGGCGTAACGGCTGGATCTTGGACGGTTTCCCCCCGCACAGTTCGACAAG
CCAAGCTTATGCAGAAAGCGGGCATTGAATGCCGCCCATGTCCCTATCCT
ATCGTTACCGGCCACCAGGCGCGACACACACCCCTTTCCGATTTTCCTAT
CGCCTGCTTAACGTTGCCCTCCTCGCCTGCTTCCTGTCCTTGTCCGACGC
CTTCGTCCCTACCACACCATACCCGGTGGATTTCCGTCGAAAGGCATCTT
CCCGCTCTGCTGGCGTCAAGACAGCGGACAGTATTTCCCGCCTGTCTCCG
CTCCGTGCCCAGGACGCGGCCAAAGTGGAAGACCGTATCGATGACAACAA
GCAGATCACCTCAGGCGCGGCGCGTGACGTGGATCAGGGGGCTGTCTTGA
GCGACGCGAATGCTGCATTCGCCTATAGCACAGCCGAGGAGCGGAGGGCG
GCCTCGGAGCCAGTGGGAGACGAGCCCCAGGGCCTAAAAGTGGTGCTAAC
GGGCAAGCCGTGCTCGGGCAAGGGCACGCAAGCGCCAATGATGGGCCGCA
AGTACCGGATGGTTCACATCGCTACCGGTAACTTGCTCAGGGCCGAGATC
CAGGCGGAGACGGAGTTAGGCCTGATAGCGAAGGAGCAGATGGAGAAGGG
GGAGCTGCTCCCGGACGAGCTGATCATCGCCCTTGTCAAGAAACGGGTCT
CGGCGGACGACTGTCGGCGTAACGGCTGGATCTTGGACGGTTTCCCCCCG
CACAGTTCGACAAGCCAAGCTTATGCAGAAAGCGGGCATTGAATGCCGCC
CATGTCCCTATCCTATCGTTACCGGCCACCAGGCGCGACACACACCCCTT
TCCGATTTTCCTATCGCCTGCTTAACGTTGCCCTCCTCGCCTGCTTCCTG
TCCTTGTCCGACGCCTTCGTCCCTACCACACCATACCCGGTGGATTTCCG
TCGAAAGGCATCTTCCCGCTCTGCTGGCGTCAAGACAGCGGACAGTATTT
CCCGCCTGTCTCCGCTCCGTGCCCAGGACGCGGCCAAAGTGGAAGACCGT
ATCGATGACAACAAGCAGATCACCTCAGGCGCGGCGCGTGACGTGGATCA
GGGGGCTGTCTTGAGCGACGCGAATGCTGCATTCGCCTATAGCACAGCCG
AGGAGCGGAGGGCGGCCTCGGAGCCAGTGGGAGACGAGCCCCAGGGCCTA
AAAGTGGTGCTAACGGGCAAGCCGTGCTCGGGCAAGGGCACGCAAGCGCC
AATGATGGGCCGCAAGTACCGGATGGTTCACATCGCTACCGGTAACTTGC
TCAGGGCCGAGATCCAGGCGGAGACGGAGTTAGGCCTGATAGCGAAGGAG
CAGATGGAGAAGGGGGAGCTGCTCCCGGACGAGCTGATCATCGCCCTTGT
CAAGAAACGGGTCTCGGCGGACGACTGTCGGCGTAACGGCTGGATCTTGG
ACGGTTTCCCCCCGCACAGTTCGACAAGCCAAGCTTATGCAGAAAGCGGG
CATTGAATGCCGCCCATGTCCCTATCCTATCGTTACCGGCCACCAGGCGC
GACACACACCCCTTTCCGATTTTCCTATCGCCTGCTTAACGTTGCCCTCC
TCGCCTGCTTCCTGTCCTTGTCCGACGCCTTCGTCCCTACCACACCATAC
CCGGTGGATTTCCGTCGAAAGGCATCTTCCCGCTCTGCTGGCGTCAAGAC
AGCGGACAGTATTTCCCGCCTGTCTCCGCTCCGTGCCCAGGACGCGGCCA
AAGTGGAAGACCGTATCGATGACAACAAGCAGATCACCTCAGGCGCGGCG
CGTGACGTGGATCAGGGGGCTGTCTTGAGCGACGCGAATGCTGCATTCGC
CTATAGCACAGCCGAGGAGCGGAGGGCGGCCTCGGAGCCAGTGGGAGACG
AGCCCCAGGGCCTAAAAGTGGTGCTAACGGGCAAGCCGTGCTCGGGCAAG
GGCACGCAAGCGCCAATGATGGGCCGCAAGTACCGGATGGTTCACATCGC
TACCGGTAACTTGCTCAGGGCCGAGATCCAGGCGGAGACGGAGTTAGGCC
TGATAGCGAAGGAGCAGATGGAGAAGGGGGAGCTGCTCCCGGACGAGCTG
ATCATCGCCCTTGTCAAGAAACGGGTCTCGGCGGACGACTGTCGGCGTAA
CGGCTGGATCTTGGACGGTTTCCCCCCGCACAGTTCGACAAGCCAAGCTT
ATGCAGAAAGCGGGCATTGAATGCCGCCCATGTCCCTATCCTATCGTTAC
CGGCCACCAGGCGCGACACACACCCCTTTCCGATTTTCCTATCGCCTGCT
TAACGTTGCCCTCCTCGCCTGCTTCCTGTCCTTGTCCGACGCCTTCGTCC
CTACCACACCATACCCGGTGGATTTCCGTCGAAAGGCATCTTCCCGCTCT
GCTGGCGTCAAGACAGCGGACAGTATTTCCCGCCTGTCTCCGCTCCGTGC
CCAGGACGCGGCCAAAGTGGAAGACCGTATCGATGACAACAAGCAGATCA
CCTCAGGCGCGGCGCGTGACGTGGATCAGGGGGCTGTCTTGAGCGACGCG
AATGCTGCATTCGCCTATAGCACAGCCGAGGAGCGGAGGGCGGCCTCGGA
GCCAGTGGGAGACGAGCCCCAGGGCCTAAAAGTGGTGCTAACGGGCAAGC
CGTGCTCGGGCAAGGGCACGCAAGCGCCAATGATGGGCCGCAAGTACCGG
ATGGTTCACATCGCTACCGGTAACTTGCTCAGGGCCGAGATCCAGGCGGA
GACGGAGTTAGGCCTGATAGCGAAGGAGCAGATGGAGAAGGGGGAGCTGC
TCCCGGACGAGCTGATCATCGCCCTTGTCAAGAAACGGGTCTCGGCGGAC
GACTGTCGGCGTAACGGCTGGATCTTGGACGGTTTCCCCCCGCACAGTTC
GACAAGCCAAGCTTATGCAGAAAGCGGGCATTGAATGCCGCCCATGTCCC
TATCCTATCGTTACCGGCCACCAGGCGCGACACACACCCCTTTCCGATTT
TCCTATCGCCTGCTTAACGTTGCCCTCCTCGCCTGCTTCCTGTCCTTGTC
CGACGCCTTCGTCCCTACCACACCATACCCGGTGGATTTCCGTCGAAAGG
CATCTTCCCGCTCTGCTGGCGTCAAGACAGCGGACAGTATTTCCCGCCTG
TCTCCGCTCCGTGCCCAGGACGCGGCCAAAGTGGAAGACCGTATCGATGA
CAACAAGCAGATCACCTCAGGCGCGGCGCGTGACGTGGATCAGGGGGCTG
TCTTGAGCGACGCGAATGCTGCATTCGCCTATAGCACAGCCGAGGAGCGG
AGGGCGGCCTCGGAGCCAGTGGGAGACGAGCCCCAGGGCCTAAAAGTGGT
GCTAACGGGCAAGCCGTGCTCGGGCAAGGGCACGCAAGCGCCAATGATGG
GCCGCAAGTACCGGATGGTTCACATCGCTACCGGTAACTTGCTCAGGGCC
GAGATCCAGGCGGAGACGGAGTTAGGCCTGATAGCGAAGGAGCAGATGGA
GAAGGGGGAGCTGCTCCCGGACGAGCTGATCATCGCCCTTGTCAAGAAAC
GGGTCTCGGCGGACGACTGTCGGCGTAACGGCTGGATCTTGGACGGTTTC
CCCCCGCACAGTTCGACAAGCCAAGCTTATGCAGAAAGCGGGCATTGA

Synonyms

Publications