jgi.p|Nanoce1779_2|575228, mRNA_1077 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575228
Unique NamemRNA_1077
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1293
Alignment locationscaffold_2:1165475..1167243 -

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Properties
Property NameValue
TranscriptId575314
TrackFilteredModels2
ProteinId575228
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1165475..1167243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575228gene_1077Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575228mRNA_1077-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1077CDS_1077Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1077 ID=mRNA_1077|Name=jgi.p|Nanoce1779_2|575228|organism=Nannochloropsis oceanica|type=mRNA|length=1293bp
CAGGTCATGGCAGAGGTAGAGGCGGCAGCTCGCAGCCACGAGGCACATCG
CGCGGCGTTGGCAGATTGTCCTTTGGTGGAGATTGTGCATTTCCACGACT
GCCTGCGGGGGGAAGTCAAACTCTTTGCGGCGGGCACCGCCAAGCTCAGA
GCAATCGTCGGCAGCCGCGGGGTCTTCTCACAAGAAGTTATCGATCTCGA
GGCCCAACTCCATGCACAGTTCCTCTCCCTTCGACGCGTCTTCCAAGCGC
ACAGCAAGGCCGAGGACGACCTCATCTGGCCCGCCCTCCGTGAAAAGGCC
TGGCGAGACGGCGTTGCTCGGGAGTCCCTGGAATGTGCTTTGGAAGAGGA
TCATTCCGATGAGGAATACATATTTGCCGAGATTGAGGGTTTGTTGGCCT
TGTTTGAGAAAGGGTGCAATCCTCCACCACCGCTGCTCTCGCCATCCTCT
TCTTCTTCACCAGCAATATCTACAGCAACAACAGCAGCATCAGCGGCAAC
AGCAGCAGCAGCAACGGCAGCAGTAGCATCCCTCCCCAACGTGGCCGAAA
CCACCCGCGAAGCCCTCCGCCTGCTTTCGGAGCTCGAAGGGCTGGCAATC
CGGGCGTCGGAGAATATGATCAGTCACTTGCAGCGAGAGGAGACTGAGGT
CTTGCCGTTGATTCAACGGTGTTTTTCCCGGGAGGAGATGGCGCGATTGG
TGGGGACCATCCTGGGAGAGAGGCCGGGGGATCTGATGGACACGATTTTG
GCAATGATGTTCCGCAATCTGACCCCTGAATGTGCGTATATTAGCTTCCC
TTTGGGCCCTAATGTGCCCATATTGGCTTCCCTTTGACCCTTGAATGTTC
TCACATTAGCCTCCTTCATTCCGCCTTTCTCTCCTTTCTTTGTCACACCT
CTTCCTCCCTCTCGCCCTCCTTTCCTCTTTCTTTCGGCATTATTGGTTTA
TTACGTTCGTGTTGAGGTCACCATAGCTTCCTTCCCTTCCTCCCCACTTC
CCCTCCTCTCCACAGCGAGGGCTGACATGCTGCGGCACGTCAAGCACGCA
GTGGACGGGACGTTTTTTGATCGATGGTTAAGCTATGTCCGGCTGGCGCA
CCAGGGATCAGCTGCTGCTTTTCTGGACGAGGCGGCAGGAGGGGATGAGA
GCACCCTGGAGAGGGAGAGCAAGGTGGCTGAAGAGAAGAATGCGAGGACG
GGTGCAGTTGGGGGGGGAGGAGGAGGAATGGGAGGAGGAGAAGGGGGAGG
GGGGAAGACGGAGGTGGGGTGTTTCATGGCTTGTGGTCGTGAC
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protein sequence of jgi.p|Nanoce1779_2|575228

>mRNA_1077-protein ID=mRNA_1077-protein|Name=jgi.p|Nanoce1779_2|575228|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MAEVEAAARSHEAHRAALADCPLVEIVHFHDCLRGEVKLFAAGTAKLRAI
VGSRGVFSQEVIDLEAQLHAQFLSLRRVFQAHSKAEDDLIWPALREKAWR
DGVARESLECALEEDHSDEEYIFAEIEGLLALFEKGCNPPPPLLSPSSSS
SPAISTATTAASAATAAAATAAVASLPNVAETTREALRLLSELEGLAIRA
SENMISHLQREETEVLPLIQRCFSREEMARLVGTILGERPGDLMDTILAM
MFRNLTPECAYISFPLGPNVPILASL*
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mRNA from alignment at scaffold_2:1165475..1167243-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1077 ID=mRNA_1077|Name=jgi.p|Nanoce1779_2|575228|organism=Nannochloropsis oceanica|type=mRNA|length=1769bp|location=Sequence derived from alignment at scaffold_2:1165475..1167243- (Nannochloropsis oceanica)
CAGGTCATGGCAGAGGTAGAGGCGGCAGCTCGCAGCCACGAGGCACATCG
GTACGTGCGAGAGGATACGTATGGGGGTCGGGGGAAAAGCATGCATATCC
TAACAGAGGAGGCTGGGGCCTACACCAATCCGAGGCACAGGCTTGACACA
TAACATTAACAATAAAAACCGTGTTGTGGAGCGAGGTATACGGCCAGGGC
AGGACCCGTCTGCATTCCCGCCGTGCTATCACCCGCGCTGGGAGAAAGCT
TAAGATGCTTGGATTCACACTCCTGTCTCGAGCCCAGGAGGAATGCTTGG
GATGCCCCATTCCCACATATGTCACTCATACACTCTCCCTTATCATGTTA
CTACAAATGCAGCGCGGCGTTGGCAGATTGTCCTTTGGTGGAGATTGTGC
ATTTCCACGACTGCCTGCGGGGGGAAGTCAAACTCTTTGCGGCGGGCACC
GCCAAGCTCAGGTGAGCTTTTGGACAGAGAAAGAGAGGACGACATGCATG
GAGAGCGAATGGGCACGGAGAATAGAAAAGAGGCATTTGGGTCTTAGGAA
GGACTCAAGGAAGTCTATATAGAGTGCTGAATAATTTGTCAGGCATGTCT
CATTCCTCCTCTTAACGACCAACAGAGCAATCGTCGGCAGCCGCGGGGTC
TTCTCACAAGAAGTTATCGATCTCGAGGCCCAACTCCATGCACAGTTCCT
CTCCCTTCGACGCGTCTTCCAAGCGCACAGCAAGGCCGAGGACGACCTCA
TCTGGCCCGCCCTCCGTGAAAAGGCCTGGCGAGACGGCGTTGCTCGGGAG
TCCCTGGAATGTGCTTTGGAAGAGGATCATTCCGATGAGGAATACATATT
TGCCGAGATTGAGGGTTTGTTGGCCTTGTTTGAGAAAGGGTGCAATCCTC
CACCACCGCTGCTCTCGCCATCCTCTTCTTCTTCACCAGCAATATCTACA
GCAACAACAGCAGCATCAGCGGCAACAGCAGCAGCAGCAACGGCAGCAGT
AGCATCCCTCCCCAACGTGGCCGAAACCACCCGCGAAGCCCTCCGCCTGC
TTTCGGAGCTCGAAGGGCTGGCAATCCGGGCGTCGGAGAATATGATCAGT
CACTTGCAGCGAGAGGAGACTGAGGTCTTGCCGTTGATTCAACGGTGTTT
TTCCCGGGAGGAGATGGCGCGATTGGTGGGGACCATCCTGGGAGAGAGGC
CGGGGGATCTGATGGACACGATTTTGGCAATGATGTTCCGCAATCTGACC
CCTGAATGTGCGTATATTAGCTTCCCTTTGGGCCCTAATGTGCCCATATT
GGCTTCCCTTTGACCCTTGAATGTTCTCACATTAGCCTCCTTCATTCCGC
CTTTCTCTCCTTTCTTTGTCACACCTCTTCCTCCCTCTCGCCCTCCTTTC
CTCTTTCTTTCGGCATTATTGGTTTATTACGTTCGTGTTGAGGTCACCAT
AGCTTCCTTCCCTTCCTCCCCACTTCCCCTCCTCTCCACAGCGAGGGCTG
ACATGCTGCGGCACGTCAAGCACGCAGTGGACGGGACGTTTTTTGATCGA
TGGTTAAGCTATGTCCGGCTGGCGCACCAGGGATCAGCTGCTGCTTTTCT
GGACGAGGCGGCAGGAGGGGATGAGAGCACCCTGGAGAGGGAGAGCAAGG
TGGCTGAAGAGAAGAATGCGAGGACGGGTGCAGTTGGGGGGGGAGGAGGA
GGAATGGGAGGAGGAGAAGGGGGAGGGGGGAAGACGGAGGTGGGGTGTTT
CATGGCTTGTGGTCGTGAC
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Coding sequence (CDS) from alignment at scaffold_2:1165475..1167243-

>mRNA_1077 ID=mRNA_1077|Name=jgi.p|Nanoce1779_2|575228|organism=Nannochloropsis oceanica|type=CDS|length=2493bp|location=Sequence derived from alignment at scaffold_2:1165475..1167243- (Nannochloropsis oceanica)
AGCAATCGTCGGCAGCCGCGGGGTCTTCTCACAAGAAGTTATCGATCTCG
AGGCCCAACTCCATGCACAGTTCCTCTCCCTTCGACGCGTCTTCCAAGCG
CACAGCAAGGCCGAGGACGACCTCATCTGGCCCGCCCTCCGTGAAAAGGC
CTGGCGAGACGGCGTTGCTCGGGAGTCCCTGGAATGTGCTTTGGAAGAGG
ATCATTCCGATGAGGAATACATATTTGCCGAGATTGAGGGTTTGTTGGCC
TTGTTTGAGAAAGGGTGCAATCCTCCACCACCGCTGCTCTCGCCATCCTC
TTCTTCTTCACCAGCAATATCTACAGCAACAACAGCAGCATCAGCGGCAA
CAGCAGCAGCAGCAACGGCAGCAGTAGCATCCCTCCCCAACGTGGCCGAA
ACCACCCGCGAAGCCCTCCGCCTGCTTTCGGAGCTCGAAGGGCTGGCAAT
CCGGGCGTCGGAGAATATGATCAGTCACTTGCAGCGAGAGGAGACTGAGG
TCTTGCCGTTGATTCAACGGTGTTTTTCCCGGGAGGAGATGGCGCGATTG
GTGGGGACCATCCTGGGAGAGAGGCCGGGGGATCTGATGGACACGATTTT
GGCAATGATGTTCCGCAATCTGACCCCTGAATGTGCGTATATTAGCTTCC
CTTTGGGCCCTAATGTGCCCATATTGGCTTCCCTTTGACGCGGCGTTGGC
AGATTGTCCTTTGGTGGAGATTGTGCATTTCCACGACTGCCTGCGGGGGG
AAGTCAAACTCTTTGCGGCGGGCACCGCCAAGCTCAGATGGCAGAGGTAG
AGGCGGCAGCTCGCAGCCACGAGGCACATCGAGCAATCGTCGGCAGCCGC
GGGGTCTTCTCACAAGAAGTTATCGATCTCGAGGCCCAACTCCATGCACA
GTTCCTCTCCCTTCGACGCGTCTTCCAAGCGCACAGCAAGGCCGAGGACG
ACCTCATCTGGCCCGCCCTCCGTGAAAAGGCCTGGCGAGACGGCGTTGCT
CGGGAGTCCCTGGAATGTGCTTTGGAAGAGGATCATTCCGATGAGGAATA
CATATTTGCCGAGATTGAGGGTTTGTTGGCCTTGTTTGAGAAAGGGTGCA
ATCCTCCACCACCGCTGCTCTCGCCATCCTCTTCTTCTTCACCAGCAATA
TCTACAGCAACAACAGCAGCATCAGCGGCAACAGCAGCAGCAGCAACGGC
AGCAGTAGCATCCCTCCCCAACGTGGCCGAAACCACCCGCGAAGCCCTCC
GCCTGCTTTCGGAGCTCGAAGGGCTGGCAATCCGGGCGTCGGAGAATATG
ATCAGTCACTTGCAGCGAGAGGAGACTGAGGTCTTGCCGTTGATTCAACG
GTGTTTTTCCCGGGAGGAGATGGCGCGATTGGTGGGGACCATCCTGGGAG
AGAGGCCGGGGGATCTGATGGACACGATTTTGGCAATGATGTTCCGCAAT
CTGACCCCTGAATGTGCGTATATTAGCTTCCCTTTGGGCCCTAATGTGCC
CATATTGGCTTCCCTTTGACGCGGCGTTGGCAGATTGTCCTTTGGTGGAG
ATTGTGCATTTCCACGACTGCCTGCGGGGGGAAGTCAAACTCTTTGCGGC
GGGCACCGCCAAGCTCAGATGGCAGAGGTAGAGGCGGCAGCTCGCAGCCA
CGAGGCACATCGAGCAATCGTCGGCAGCCGCGGGGTCTTCTCACAAGAAG
TTATCGATCTCGAGGCCCAACTCCATGCACAGTTCCTCTCCCTTCGACGC
GTCTTCCAAGCGCACAGCAAGGCCGAGGACGACCTCATCTGGCCCGCCCT
CCGTGAAAAGGCCTGGCGAGACGGCGTTGCTCGGGAGTCCCTGGAATGTG
CTTTGGAAGAGGATCATTCCGATGAGGAATACATATTTGCCGAGATTGAG
GGTTTGTTGGCCTTGTTTGAGAAAGGGTGCAATCCTCCACCACCGCTGCT
CTCGCCATCCTCTTCTTCTTCACCAGCAATATCTACAGCAACAACAGCAG
CATCAGCGGCAACAGCAGCAGCAGCAACGGCAGCAGTAGCATCCCTCCCC
AACGTGGCCGAAACCACCCGCGAAGCCCTCCGCCTGCTTTCGGAGCTCGA
AGGGCTGGCAATCCGGGCGTCGGAGAATATGATCAGTCACTTGCAGCGAG
AGGAGACTGAGGTCTTGCCGTTGATTCAACGGTGTTTTTCCCGGGAGGAG
ATGGCGCGATTGGTGGGGACCATCCTGGGAGAGAGGCCGGGGGATCTGAT
GGACACGATTTTGGCAATGATGTTCCGCAATCTGACCCCTGAATGTGCGT
ATATTAGCTTCCCTTTGGGCCCTAATGTGCCCATATTGGCTTCCCTTTGA
CGCGGCGTTGGCAGATTGTCCTTTGGTGGAGATTGTGCATTTCCACGACT
GCCTGCGGGGGGAAGTCAAACTCTTTGCGGCGGGCACCGCCAAGCTCAGA
TGGCAGAGGTAGAGGCGGCAGCTCGCAGCCACGAGGCACATCG
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Synonyms
Publications