jgi.p|Nanoce1779_2|575221, mRNA_1076 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575221
Unique NamemRNA_1076
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1972
Alignment locationscaffold_2:1163639..1165610 -

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Properties
Property NameValue
TranscriptId575307
TrackFilteredModels2
ProteinId575221
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1163639..1165610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575221gene_1076Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575221mRNA_1076-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1076CDS_1076Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1076 ID=mRNA_1076|Name=jgi.p|Nanoce1779_2|575221|organism=Nannochloropsis oceanica|type=mRNA|length=1972bp
GGAGAGGGAGAGCAAGGTGGCTGAAGAGAAGAATGCGAGGACGGGTGCAG
TTGGGGGGGGAGGAGGAGGAATGGGAGGAGGAGAAGGGGGAGGGGGGAAG
ACGGAGGTGGGGTGTTTCATGGCTTGTGGTCGTGACAGCGAGGAAGGGGG
GGAGGATCAGGTGCACACCGCGGATGGAATTTGTGCGTCTCCCCACAATG
GCCGTACGTGTACCAACACGCATCACCACCACCATGAACGGGGAAAGCCT
CGCCCTGGCTGTCGTATGTGCGGTTGGGTGGGCCGATGTCCCCGCGAGTC
GAAATTAGAACCCCAAGAATTCGAAGCGGCCGTTCGCGCAATTGCGAGAG
ACAACAGCTTGGGGATGACGGACAAGAGTAAAGCGGTGCAAACCCTTCGG
TCATGTTCTTGGCAGCAGAAAAGGCCCAGGCCAGGGCGAACCATCACGGC
AGGTACGGTTGGCCATATCCATCCCCCTCCACCTCCCTCATCCTCGTCCT
CCACCTCGGGCACTTCCTCCTCTTCTTCCTCGTCGGCAATGCGCCCTTCC
TCCCTCTCCGCCATCCCCGCTGCCATTATCACCAGCAATAGCAGCAGCAA
CAGCAACACAATCTCCTCGCAACTCAAGGCGCCAAGCGTGGCCATGCCCC
TCCCTCCCCCTCACCGCCCTCCCTCCGCCGTCAAAGAGGCCCACGATCGC
TCCCCATCCCACACCCCCACGGGTGAACTCGGTTGCAAGCACTACCGCCG
CGCCTGCAAACTCCGCGCAGCCTGCTGTGGCCGTCTTTATCCTTGTCGTC
TTTGTCACGACGAGGCGGCGGGAGACCACGCGATGGATCGCTATGCAGTG
ACGGAAATTTGTTGCATGCATTGTGGTGAGCTCCAGCCGCCAGCAAGGGC
ATGTAGGAATCAGGGGTGTCGGCAGATTTTCAGCGCCTACTATTGCGACA
TCTGTAGGTTGTATGATGATGCGGCGGGAAAAGCCATATACCACTGTCCC
TACTGCAATGTGTGCCGACTTGGGAAGGGTCTTGGGATTGACTTCCGGCA
CTGCATGACATGCAATGCGTGTGTATCTCTCAACGTAGCCCCAGAGAAGC
ATAAGTGCATCGAGCAGGCGCTGCAGAGAGACTGTCCAGTGTGTTCCGAG
CCATTGTTCACGAGCACGACGCACTATAAAGTCTTATCGTTGTGTGGGCA
TTCCATGCATCGGCAGTGCTATGAGGCCTATCGACAGACGGCTTACACGT
GCCCGATCTGCAAGAAGTCCATGGAGGATATGACGAGTCATTTTGCAGGG
CTTGACCTACTCTTGCAGACCTACCCCATGCCGATTGAGTTTGCCACGTG
GCGCTCGGATGTGTTATGTCAGGACTGTGGGGAGGAGAGTCATGATATTC
CCTACCATTTTTTGTACCATAAGTGCACGCGTGGATGTGGGAGCTATAAT
ACTCGGGTATTGCAGGCGGGCGATCGAGGAGGTGGGGCAGGGGGGATTGG
AGGGGGAGTTGGAGGTGAAGGAGGAAATGGGGAGTCGTCGTGAGAGGCAG
AAGAGGAGGACAGGAGGACATATATTTTTGTTTAGGACTGGTGTACGAGT
CAGAAGGGAAAAAATCAAGAAGCGCGGAAGGAGAAGGAAAAGTATGAGGA
TGACGGAGCGCAAATACAACAGTGTATATACGACGTATAAAATGAAGTTG
GATTTCTTACCTTCTATATATATGCGTCTACTTGCATGTCCAAATAGTTT
TTTTTGTGTCTGACGGTTTGCAGCTTGAGCAATAGCACCAAAGTGAGCGA
AAAGGGCTCGGTGTAAGAGAAAGTGTGCTGCTTGGCACTAACCGACACAC
CCAGCCCACGATGCATCCCTAGCAAAACAAAAAACTTAAGAACCACATAG
GGGAAACCCCAAAAGAGAAAGAGACGATCAACAAATAAGAATTTTAAACT
GCAGTGCTCCATTATTTTTGTC
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protein sequence of jgi.p|Nanoce1779_2|575221

>mRNA_1076-protein ID=mRNA_1076-protein|Name=jgi.p|Nanoce1779_2|575221|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MGGGEGGGGKTEVGCFMACGRDSEEGGEDQVHTADGICASPHNGRTCTNT
HHHHHERGKPRPGCRMCGWVGRCPRESKLEPQEFEAAVRAIARDNSLGMT
DKSKAVQTLRSCSWQQKRPRPGRTITAGTVGHIHPPPPPSSSSSTSGTSS
SSSSSAMRPSSLSAIPAAIITSNSSSNSNTISSQLKAPSVAMPLPPPHRP
PSAVKEAHDRSPSHTPTGELGCKHYRRACKLRAACCGRLYPCRLCHDEAA
GDHAMDRYAVTEICCMHCGELQPPARACRNQGCRQIFSAYYCDICRLYDD
AAGKAIYHCPYCNVCRLGKGLGIDFRHCMTCNACVSLNVAPEKHKCIEQA
LQRDCPVCSEPLFTSTTHYKVLSLCGHSMHRQCYEAYRQTAYTCPICKKS
MEDMTSHFAGLDLLLQTYPMPIEFATWRSDVLCQDCGEESHDIPYHFLYH
KCTRGCGSYNTRVLQAGDRGGGAGGIGGGVGGEGGNGESS*
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mRNA from alignment at scaffold_2:1163639..1165610-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1076 ID=mRNA_1076|Name=jgi.p|Nanoce1779_2|575221|organism=Nannochloropsis oceanica|type=mRNA|length=1972bp|location=Sequence derived from alignment at scaffold_2:1163639..1165610- (Nannochloropsis oceanica)
GGAGAGGGAGAGCAAGGTGGCTGAAGAGAAGAATGCGAGGACGGGTGCAG
TTGGGGGGGGAGGAGGAGGAATGGGAGGAGGAGAAGGGGGAGGGGGGAAG
ACGGAGGTGGGGTGTTTCATGGCTTGTGGTCGTGACAGCGAGGAAGGGGG
GGAGGATCAGGTGCACACCGCGGATGGAATTTGTGCGTCTCCCCACAATG
GCCGTACGTGTACCAACACGCATCACCACCACCATGAACGGGGAAAGCCT
CGCCCTGGCTGTCGTATGTGCGGTTGGGTGGGCCGATGTCCCCGCGAGTC
GAAATTAGAACCCCAAGAATTCGAAGCGGCCGTTCGCGCAATTGCGAGAG
ACAACAGCTTGGGGATGACGGACAAGAGTAAAGCGGTGCAAACCCTTCGG
TCATGTTCTTGGCAGCAGAAAAGGCCCAGGCCAGGGCGAACCATCACGGC
AGGTACGGTTGGCCATATCCATCCCCCTCCACCTCCCTCATCCTCGTCCT
CCACCTCGGGCACTTCCTCCTCTTCTTCCTCGTCGGCAATGCGCCCTTCC
TCCCTCTCCGCCATCCCCGCTGCCATTATCACCAGCAATAGCAGCAGCAA
CAGCAACACAATCTCCTCGCAACTCAAGGCGCCAAGCGTGGCCATGCCCC
TCCCTCCCCCTCACCGCCCTCCCTCCGCCGTCAAAGAGGCCCACGATCGC
TCCCCATCCCACACCCCCACGGGTGAACTCGGTTGCAAGCACTACCGCCG
CGCCTGCAAACTCCGCGCAGCCTGCTGTGGCCGTCTTTATCCTTGTCGTC
TTTGTCACGACGAGGCGGCGGGAGACCACGCGATGGATCGCTATGCAGTG
ACGGAAATTTGTTGCATGCATTGTGGTGAGCTCCAGCCGCCAGCAAGGGC
ATGTAGGAATCAGGGGTGTCGGCAGATTTTCAGCGCCTACTATTGCGACA
TCTGTAGGTTGTATGATGATGCGGCGGGAAAAGCCATATACCACTGTCCC
TACTGCAATGTGTGCCGACTTGGGAAGGGTCTTGGGATTGACTTCCGGCA
CTGCATGACATGCAATGCGTGTGTATCTCTCAACGTAGCCCCAGAGAAGC
ATAAGTGCATCGAGCAGGCGCTGCAGAGAGACTGTCCAGTGTGTTCCGAG
CCATTGTTCACGAGCACGACGCACTATAAAGTCTTATCGTTGTGTGGGCA
TTCCATGCATCGGCAGTGCTATGAGGCCTATCGACAGACGGCTTACACGT
GCCCGATCTGCAAGAAGTCCATGGAGGATATGACGAGTCATTTTGCAGGG
CTTGACCTACTCTTGCAGACCTACCCCATGCCGATTGAGTTTGCCACGTG
GCGCTCGGATGTGTTATGTCAGGACTGTGGGGAGGAGAGTCATGATATTC
CCTACCATTTTTTGTACCATAAGTGCACGCGTGGATGTGGGAGCTATAAT
ACTCGGGTATTGCAGGCGGGCGATCGAGGAGGTGGGGCAGGGGGGATTGG
AGGGGGAGTTGGAGGTGAAGGAGGAAATGGGGAGTCGTCGTGAGAGGCAG
AAGAGGAGGACAGGAGGACATATATTTTTGTTTAGGACTGGTGTACGAGT
CAGAAGGGAAAAAATCAAGAAGCGCGGAAGGAGAAGGAAAAGTATGAGGA
TGACGGAGCGCAAATACAACAGTGTATATACGACGTATAAAATGAAGTTG
GATTTCTTACCTTCTATATATATGCGTCTACTTGCATGTCCAAATAGTTT
TTTTTGTGTCTGACGGTTTGCAGCTTGAGCAATAGCACCAAAGTGAGCGA
AAAGGGCTCGGTGTAAGAGAAAGTGTGCTGCTTGGCACTAACCGACACAC
CCAGCCCACGATGCATCCCTAGCAAAACAAAAAACTTAAGAACCACATAG
GGGAAACCCCAAAAGAGAAAGAGACGATCAACAAATAAGAATTTTAAACT
GCAGTGCTCCATTATTTTTGTC
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Coding sequence (CDS) from alignment at scaffold_2:1163639..1165610-

>mRNA_1076 ID=mRNA_1076|Name=jgi.p|Nanoce1779_2|575221|organism=Nannochloropsis oceanica|type=CDS|length=1473bp|location=Sequence derived from alignment at scaffold_2:1163639..1165610- (Nannochloropsis oceanica)
ATGGGAGGAGGAGAAGGGGGAGGGGGGAAGACGGAGGTGGGGTGTTTCAT
GGCTTGTGGTCGTGACAGCGAGGAAGGGGGGGAGGATCAGGTGCACACCG
CGGATGGAATTTGTGCGTCTCCCCACAATGGCCGTACGTGTACCAACACG
CATCACCACCACCATGAACGGGGAAAGCCTCGCCCTGGCTGTCGTATGTG
CGGTTGGGTGGGCCGATGTCCCCGCGAGTCGAAATTAGAACCCCAAGAAT
TCGAAGCGGCCGTTCGCGCAATTGCGAGAGACAACAGCTTGGGGATGACG
GACAAGAGTAAAGCGGTGCAAACCCTTCGGTCATGTTCTTGGCAGCAGAA
AAGGCCCAGGCCAGGGCGAACCATCACGGCAGGTACGGTTGGCCATATCC
ATCCCCCTCCACCTCCCTCATCCTCGTCCTCCACCTCGGGCACTTCCTCC
TCTTCTTCCTCGTCGGCAATGCGCCCTTCCTCCCTCTCCGCCATCCCCGC
TGCCATTATCACCAGCAATAGCAGCAGCAACAGCAACACAATCTCCTCGC
AACTCAAGGCGCCAAGCGTGGCCATGCCCCTCCCTCCCCCTCACCGCCCT
CCCTCCGCCGTCAAAGAGGCCCACGATCGCTCCCCATCCCACACCCCCAC
GGGTGAACTCGGTTGCAAGCACTACCGCCGCGCCTGCAAACTCCGCGCAG
CCTGCTGTGGCCGTCTTTATCCTTGTCGTCTTTGTCACGACGAGGCGGCG
GGAGACCACGCGATGGATCGCTATGCAGTGACGGAAATTTGTTGCATGCA
TTGTGGTGAGCTCCAGCCGCCAGCAAGGGCATGTAGGAATCAGGGGTGTC
GGCAGATTTTCAGCGCCTACTATTGCGACATCTGTAGGTTGTATGATGAT
GCGGCGGGAAAAGCCATATACCACTGTCCCTACTGCAATGTGTGCCGACT
TGGGAAGGGTCTTGGGATTGACTTCCGGCACTGCATGACATGCAATGCGT
GTGTATCTCTCAACGTAGCCCCAGAGAAGCATAAGTGCATCGAGCAGGCG
CTGCAGAGAGACTGTCCAGTGTGTTCCGAGCCATTGTTCACGAGCACGAC
GCACTATAAAGTCTTATCGTTGTGTGGGCATTCCATGCATCGGCAGTGCT
ATGAGGCCTATCGACAGACGGCTTACACGTGCCCGATCTGCAAGAAGTCC
ATGGAGGATATGACGAGTCATTTTGCAGGGCTTGACCTACTCTTGCAGAC
CTACCCCATGCCGATTGAGTTTGCCACGTGGCGCTCGGATGTGTTATGTC
AGGACTGTGGGGAGGAGAGTCATGATATTCCCTACCATTTTTTGTACCAT
AAGTGCACGCGTGGATGTGGGAGCTATAATACTCGGGTATTGCAGGCGGG
CGATCGAGGAGGTGGGGCAGGGGGGATTGGAGGGGGAGTTGGAGGTGAAG
GAGGAAATGGGGAGTCGTCGTGA
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Synonyms
Publications