jgi.p|Nanoce1779_2|408668, mRNA_10748 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|408668
Unique Name	mRNA_10748
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1166
Alignment location	scaffold_73:60850..62595 -

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Properties


Property Name	Value
TranscriptId	408754
Track	FilteredModels2
ProteinId	408668

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_73	supercontig	scaffold_73:60850..62595 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|408668	gene_10748	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|408668	mRNA_10748-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10748	CDS_10748	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_73:60850..62595-
coding sequence from alignment at scaffold_73:60850..62595-

mRNA sequence

>mRNA_10748 ID=mRNA_10748|Name=jgi.p|Nanoce1779_2|408668|organism=Nannochloropsis oceanica|type=mRNA|length=1166bp
CAGGCGATGTCCGCTTGACTTAAGGGCAGTCTTCATGCCTCATATCTGTG
AGTGTGTGTCTCAGTGTGTGGAATAGTTTGGCAGGGTACAGGCGCAATGT
GGAGACAAAGACAGAGCGCCAGGAGACATACGTCCCCCAGCTCGATAACT
CTCGCCGGTGTGTGTCTCTCTCTGGGACCATAAAAAAATCTTCAACCCCT
CTCCTCTCCACCCACCCACCACCACGGACTAGGGACAGATGTTGACGGAC
GAGGAGGCATGGCAAACATTGGCCCCGTTTCTGAGTTTGGGCGTATTAAA
GACGCGACAAGTGGCATCCATGCTCAAGGCCCCCCTTGCCCGGCGCGGGG
ACCTTTATCAGATGCTGATTGCCGAAGCCTACCAGACGCGAGAAGCAATG
CGGCGGATTTGTGCTGAGTGTGGAAAACGAGAAGGAGAGCAGGGCATGGG
AAAACTCAAGCAATGCGGGAAATGTGCCAACATCTGGTATTGTTCCCGCG
ACTGTCAACTTGCCAACTTCCACTCCGGCGTCCACAAACAAGCCTGTACT
GCCCTCAAAATCGCGCGGATCTGCCGTGAAAATGAGGGAATCCGCTCACA
ATACGAGGAGCAATGGTTGAACAAATATCTGGTCGGTCTGCACCGAGAGT
CGATCATGACTTGGCCTGAGGGACATATCCCGGAGGGATGGACGGCCTTC
TTCGAGACGCGGGGCATCTCACAGCAGGCGAGCGCGAACAATAGCAGTGG
CATGGCCTTGAGTGAGGTGTTACACGAGGGCCTGACCATTGCCTTGGCGG
CGAAAAAGTTCGGCTTGCTGGGCAGGGAGGGAGGGAAGGAGGGATGGGAG
ACGAAAAAGCGGCCATTTCGACTGCATGTGTTGGGGGCGACGGAGACGGA
GGAGGCGCGGCGCCTGCATTTGACCATGGGAGAGCTCTATAAGCTGCTGT
ATCCCTACTACTATGAAGGATTGGAGGTCTCTCTCTTCGGTCCCCAGCTC
ACGTCCCTCACCACTTTCCGCGTGCCTCTTAAAGGGTTCGAGGGTGGGAA
GGAGGGCGGGGAGGAAGGATGAAGGCTGGGAGGGATGTGGGAATGATGTA
GTCTGCCTGGTTGAGTTTGTCTCTCCTTTCTTTGCATGGGAAAGTTTATG
ACATTCTCAGAAGTGT

protein sequence of jgi.p|Nanoce1779_2|408668

>mRNA_10748-protein ID=mRNA_10748-protein|Name=jgi.p|Nanoce1779_2|408668|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MLTDEEAWQTLAPFLSLGVLKTRQVASMLKAPLARRGDLYQMLIAEAYQT
REAMRRICAECGKREGEQGMGKLKQCGKCANIWYCSRDCQLANFHSGVHK
QACTALKIARICRENEGIRSQYEEQWLNKYLVGLHRESIMTWPEGHIPEG
WTAFFETRGISQQASANNSSGMALSEVLHEGLTIALAAKKFGLLGREGGK
EGWETKKRPFRLHVLGATETEEARRLHLTMGELYKLLYPYYYEGLEVSLF
GPQLTSLTTFRVPLKGFEGGKEGGEEG*

mRNA from alignment at scaffold_73:60850..62595-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10748 ID=mRNA_10748|Name=jgi.p|Nanoce1779_2|408668|organism=Nannochloropsis oceanica|type=mRNA|length=1746bp|location=Sequence derived from alignment at scaffold_73:60850..62595- (Nannochloropsis oceanica)
CAGGCGATGTCCGCTTGACTTAAGGGCAGTCTTCATGCCTCATATCTGTG
AGTGTGTGTCTCAGTGTGTGGAATAGTTTGGCAGGGTACAGGCGCAATGT
GGAGACAAAGACAGAGCGCCAGGAGACATACGTCCCCCAGCTCGATAACT
CTCGCCGGTGTGTGTCTCTCTCTGGGACCATAAAAAAATCTTCAACCCCT
CTCCTCTCCACCCACCCACCACCACGGACTAGGGACAGATGTTGACGGAC
GAGGAGGCATGGCAAACATTGGCCCCGTTTCTGAGTTTGGGCGTATTAAA
GACGCGACAAGTGGCATCCATGCTCAAGGCCCCCCTTGCCCGGCGCGGGG
ACCTTTATCAGATGCTGATTGCCGAAGCCTACCAGACGCGAGAAGCAATG
CGGCGGATTTGTGCTGAGTGTGGAAAACGAGAAGGAGAGCAGGGCATGGG
AAAACTCAAGCAATGCGGGAAATGTGCCAACATCTGGTAAGGCGAGCGTG
CTGGAGGGAAAGAGGGGGAGAGCAAATAAGGGATGATGTCAGGGAGTGAA
CATAGGGATTTATTGCATTGATAAAAAAGCCCTTTTGAAAGCATGCCCTC
CTCCGTATACACATAGGTTATAGTTATAGTTATTTCCTTTCTGTATGCTT
ATTTCCTGACTGTACCTTTGACTCTCCTTCTTCCCTCCCTCCCTCCCTCC
CTCCCTCCTCTTCCTCCCACAAGGTATTGTTCCCGCGACTGTCAACTTGC
CAACTTCCACTCCGGCGTCCACAAACAAGCCTGTACTGCCCTCAAAATCG
CGCGGATCTGCCGTGAAAATGAGGGAATCCGCTCACAATACGAGGAGCAA
TGGTTGAACAAATATCTGGTCGGTCTGCACCGAGAGTCGATCATGACTTG
GCCTGAGGGACATATCCCGGAGGGATGGACGGCCTTCTTCGAGACGCGGG
GCATCTCACAGCAGGCGAGCGCGAACAATAGCAGTGGCATGGCCTTGAGT
GAGGTGTTACACGAGGGCCTGACCATTGCCTTGGCGGCGAAAAAGTTCGG
CTTGCTGGGCAGGGAGGGAGGGAAGGAGGGATGGGAGACGAAAAAGCGGC
CATTTCGACTGCATGTGTTGGGGGCGACGGAGACGGAGGAGGCGCGGCGC
CTGCATTTGACCATGGGAGAGCTCTATAAGCTGCTGTATCCCTACTACTA
TGAAGGCAAGTCTCCTCTTTCTGCCTTCTCTCTCTCCTTCCCTCCTTCCC
TCCTTCCCTCCCTCCCTCACATTTTCCCCTCCCCTTCAATATTTTCCTCA
ACCTCCTATCCCACTCCCTTCCAATGATATGTCCATGGTCTGACCGCCCT
CACTCAAAGCTTCCTCCCTCCCTTTTCAGGATTGGAGGTCTCTCTCTTCG
GTCCCCAGCTCACGTCCCTCACCACTTTCCGCGTGCCTCTTAAAGGGTTC
GAGGGTGGGAAGGAGGGCGGGGAGGAAGGCGGGAGGGTGACCGTGGAGAA
GAGCAATTTGCTGTACCATGATTGGGTGCTGCGGCATGGAGGAGGGACGG
CGCCTAAGCCTGATTTGGTGGTGGCGTTCAACAGTGGAGCGTATACTGGT
GGGAAGGAGGGCGGGGAGGGAGGGAAGGAGAGGGGGAGGAATGGAAGGAT
GAAGGCTGGGAGGGATGTGGGAATGATGTAGTCTGCCTGGTTGAGTTTGT
CTCTCCTTTCTTTGCATGGGAAAGTTTATGACATTCTCAGAAGTGT

Coding sequence (CDS) from alignment at scaffold_73:60850..62595-

>mRNA_10748 ID=mRNA_10748|Name=jgi.p|Nanoce1779_2|408668|organism=Nannochloropsis oceanica|type=CDS|length=3336bp|location=Sequence derived from alignment at scaffold_73:60850..62595- (Nannochloropsis oceanica)
GATGAGATTGGAGGTCTCTCTCTTCGGTCCCCAGCTCACGTCCCTCACCA
CTTTCCGCGTGCCTCTTAAAGGGTTCGAGGGTGGGAAGGAGGGCGGGGAG
GAAGGTATTGTTCCCGCGACTGTCAACTTGCCAACTTCCACTCCGGCGTC
CACAAACAAGCCTGTACTGCCCTCAAAATCGCGCGGATCTGCCGTGAAAA
TGAGGGAATCCGCTCACAATACGAGGAGCAATGGTTGAACAAATATCTGG
TCGGTCTGCACCGAGAGTCGATCATGACTTGGCCTGAGGGACATATCCCG
GAGGGATGGACGGCCTTCTTCGAGACGCGGGGCATCTCACAGCAGGCGAG
CGCGAACAATAGCAGTGGCATGGCCTTGAGTGAGGTGTTACACGAGGGCC
TGACCATTGCCTTGGCGGCGAAAAAGTTCGGCTTGCTGGGCAGGGAGGGA
GGGAAGGAGGGATGGGAGACGAAAAAGCGGCCATTTCGACTGCATGTGTT
GGGGGCGACGGAGACGGAGGAGGCGCGGCGCCTGCATTTGACCATGGGAG
AGCTCTATAAGCTGCTGTATCCCTACTACTATGAAGATGTTGACGGACGA
GGAGGCATGGCAAACATTGGCCCCGTTTCTGAGTTTGGGCGTATTAAAGA
CGCGACAAGTGGCATCCATGCTCAAGGCCCCCCTTGCCCGGCGCGGGGAC
CTTTATCAGATGCTGATTGCCGAAGCCTACCAGACGCGAGAAGCAATGCG
GCGGATTTGTGCTGAGTGTGGAAAACGAGAAGGAGAGCAGGGCATGGGAA
AACTCAAGCAATGCGGGAAATGTGCCAACATCTGGATGAGATTGGAGGTC
TCTCTCTTCGGTCCCCAGCTCACGTCCCTCACCACTTTCCGCGTGCCTCT
TAAAGGGTTCGAGGGTGGGAAGGAGGGCGGGGAGGAAGGTATTGTTCCCG
CGACTGTCAACTTGCCAACTTCCACTCCGGCGTCCACAAACAAGCCTGTA
CTGCCCTCAAAATCGCGCGGATCTGCCGTGAAAATGAGGGAATCCGCTCA
CAATACGAGGAGCAATGGTTGAACAAATATCTGGTCGGTCTGCACCGAGA
GTCGATCATGACTTGGCCTGAGGGACATATCCCGGAGGGATGGACGGCCT
TCTTCGAGACGCGGGGCATCTCACAGCAGGCGAGCGCGAACAATAGCAGT
GGCATGGCCTTGAGTGAGGTGTTACACGAGGGCCTGACCATTGCCTTGGC
GGCGAAAAAGTTCGGCTTGCTGGGCAGGGAGGGAGGGAAGGAGGGATGGG
AGACGAAAAAGCGGCCATTTCGACTGCATGTGTTGGGGGCGACGGAGACG
GAGGAGGCGCGGCGCCTGCATTTGACCATGGGAGAGCTCTATAAGCTGCT
GTATCCCTACTACTATGAAGATGTTGACGGACGAGGAGGCATGGCAAACA
TTGGCCCCGTTTCTGAGTTTGGGCGTATTAAAGACGCGACAAGTGGCATC
CATGCTCAAGGCCCCCCTTGCCCGGCGCGGGGACCTTTATCAGATGCTGA
TTGCCGAAGCCTACCAGACGCGAGAAGCAATGCGGCGGATTTGTGCTGAG
TGTGGAAAACGAGAAGGAGAGCAGGGCATGGGAAAACTCAAGCAATGCGG
GAAATGTGCCAACATCTGGATGAGATTGGAGGTCTCTCTCTTCGGTCCCC
AGCTCACGTCCCTCACCACTTTCCGCGTGCCTCTTAAAGGGTTCGAGGGT
GGGAAGGAGGGCGGGGAGGAAGGTATTGTTCCCGCGACTGTCAACTTGCC
AACTTCCACTCCGGCGTCCACAAACAAGCCTGTACTGCCCTCAAAATCGC
GCGGATCTGCCGTGAAAATGAGGGAATCCGCTCACAATACGAGGAGCAAT
GGTTGAACAAATATCTGGTCGGTCTGCACCGAGAGTCGATCATGACTTGG
CCTGAGGGACATATCCCGGAGGGATGGACGGCCTTCTTCGAGACGCGGGG
CATCTCACAGCAGGCGAGCGCGAACAATAGCAGTGGCATGGCCTTGAGTG
AGGTGTTACACGAGGGCCTGACCATTGCCTTGGCGGCGAAAAAGTTCGGC
TTGCTGGGCAGGGAGGGAGGGAAGGAGGGATGGGAGACGAAAAAGCGGCC
ATTTCGACTGCATGTGTTGGGGGCGACGGAGACGGAGGAGGCGCGGCGCC
TGCATTTGACCATGGGAGAGCTCTATAAGCTGCTGTATCCCTACTACTAT
GAAGATGTTGACGGACGAGGAGGCATGGCAAACATTGGCCCCGTTTCTGA
GTTTGGGCGTATTAAAGACGCGACAAGTGGCATCCATGCTCAAGGCCCCC
CTTGCCCGGCGCGGGGACCTTTATCAGATGCTGATTGCCGAAGCCTACCA
GACGCGAGAAGCAATGCGGCGGATTTGTGCTGAGTGTGGAAAACGAGAAG
GAGAGCAGGGCATGGGAAAACTCAAGCAATGCGGGAAATGTGCCAACATC
TGGATGAGATTGGAGGTCTCTCTCTTCGGTCCCCAGCTCACGTCCCTCAC
CACTTTCCGCGTGCCTCTTAAAGGGTTCGAGGGTGGGAAGGAGGGCGGGG
AGGAAGGTATTGTTCCCGCGACTGTCAACTTGCCAACTTCCACTCCGGCG
TCCACAAACAAGCCTGTACTGCCCTCAAAATCGCGCGGATCTGCCGTGAA
AATGAGGGAATCCGCTCACAATACGAGGAGCAATGGTTGAACAAATATCT
GGTCGGTCTGCACCGAGAGTCGATCATGACTTGGCCTGAGGGACATATCC
CGGAGGGATGGACGGCCTTCTTCGAGACGCGGGGCATCTCACAGCAGGCG
AGCGCGAACAATAGCAGTGGCATGGCCTTGAGTGAGGTGTTACACGAGGG
CCTGACCATTGCCTTGGCGGCGAAAAAGTTCGGCTTGCTGGGCAGGGAGG
GAGGGAAGGAGGGATGGGAGACGAAAAAGCGGCCATTTCGACTGCATGTG
TTGGGGGCGACGGAGACGGAGGAGGCGCGGCGCCTGCATTTGACCATGGG
AGAGCTCTATAAGCTGCTGTATCCCTACTACTATGAAGATGTTGACGGAC
GAGGAGGCATGGCAAACATTGGCCCCGTTTCTGAGTTTGGGCGTATTAAA
GACGCGACAAGTGGCATCCATGCTCAAGGCCCCCCTTGCCCGGCGCGGGG
ACCTTTATCAGATGCTGATTGCCGAAGCCTACCAGACGCGAGAAGCAATG
CGGCGGATTTGTGCTGAGTGTGGAAAACGAGAAGGAGAGCAGGGCATGGG
AAAACTCAAGCAATGCGGGAAATGTGCCAACATCTG

Synonyms

Publications