jgi.p|Nanoce1779_2|570112, mRNA_10744 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|570112
Unique NamemRNA_10744
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length336
Alignment locationscaffold_73:47273..47608 +

Link to JBrowse

Properties
Property NameValue
TranscriptId570198
TrackFilteredModels2
ProteinId570112
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_73supercontigscaffold_73:47273..47608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|570112gene_10744Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|570112mRNA_10744-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10744CDS_10744Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10744 ID=mRNA_10744|Name=jgi.p|Nanoce1779_2|570112|organism=Nannochloropsis oceanica|type=mRNA|length=336bp
ATGTCGTATTACGGCCCGGCAAGCGGATTTTCGCCCCCGCCCAGGGGTGG
TGGGGTGGGTGGGGGAGGAGGTGGGGGAGGAGGTGGGGGAGGAGGTGGCA
AAAAGAAGAATAAGGGAAGGAAGAAGGGCAAGGGAGGCGGCGGCGGCGGC
GGAGGAGGAGACCAGGGGTGGATGCGGCATTTGCCACCGCATGTTCGCGA
GCGGATGGAGTATCAGCACCAGCACCCGCAGTTTGCGCCGTACATGCTCC
CGGAGGACAAGGCGGTAGGTGGAGCACAGGAAGGAGGGGAGGCAGAGGTT
GGAGGCGGCGACAATTTTTTCCCCTTACGTTCGTAA
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protein sequence of jgi.p|Nanoce1779_2|570112

>mRNA_10744-protein ID=mRNA_10744-protein|Name=jgi.p|Nanoce1779_2|570112|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MSYYGPASGFSPPPRGGGVGGGGGGGGGGGGGGKKKNKGRKKGKGGGGGG
GGGDQGWMRHLPPHVRERMEYQHQHPQFAPYMLPEDKAVGGAQEGGEAEV
GGGDNFFPLRS*
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mRNA from alignment at scaffold_73:47273..47608+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10744 ID=mRNA_10744|Name=jgi.p|Nanoce1779_2|570112|organism=Nannochloropsis oceanica|type=mRNA|length=336bp|location=Sequence derived from alignment at scaffold_73:47273..47608+ (Nannochloropsis oceanica)
ATGTCGTATTACGGCCCGGCAAGCGGATTTTCGCCCCCGCCCAGGGGTGG
TGGGGTGGGTGGGGGAGGAGGTGGGGGAGGAGGTGGGGGAGGAGGTGGCA
AAAAGAAGAATAAGGGAAGGAAGAAGGGCAAGGGAGGCGGCGGCGGCGGC
GGAGGAGGAGACCAGGGGTGGATGCGGCATTTGCCACCGCATGTTCGCGA
GCGGATGGAGTATCAGCACCAGCACCCGCAGTTTGCGCCGTACATGCTCC
CGGAGGACAAGGCGGTAGGTGGAGCACAGGAAGGAGGGGAGGCAGAGGTT
GGAGGCGGCGACAATTTTTTCCCCTTACGTTCGTAA
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Coding sequence (CDS) from alignment at scaffold_73:47273..47608+

>mRNA_10744 ID=mRNA_10744|Name=jgi.p|Nanoce1779_2|570112|organism=Nannochloropsis oceanica|type=CDS|length=336bp|location=Sequence derived from alignment at scaffold_73:47273..47608+ (Nannochloropsis oceanica)
ATGTCGTATTACGGCCCGGCAAGCGGATTTTCGCCCCCGCCCAGGGGTGG
TGGGGTGGGTGGGGGAGGAGGTGGGGGAGGAGGTGGGGGAGGAGGTGGCA
AAAAGAAGAATAAGGGAAGGAAGAAGGGCAAGGGAGGCGGCGGCGGCGGC
GGAGGAGGAGACCAGGGGTGGATGCGGCATTTGCCACCGCATGTTCGCGA
GCGGATGGAGTATCAGCACCAGCACCCGCAGTTTGCGCCGTACATGCTCC
CGGAGGACAAGGCGGTAGGTGGAGCACAGGAAGGAGGGGAGGCAGAGGTT
GGAGGCGGCGACAATTTTTTCCCCTTACGTTCGTAA
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Synonyms
Publications