jgi.p|Nanoce1779_2|664955, mRNA_10736 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|664955
Unique Name	mRNA_10736
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2363
Alignment location	scaffold_73:34324..36686 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	665041
Track	FilteredModels2
ProteinId	664955

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_73	supercontig	scaffold_73:34324..36686 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|664955	gene_10736	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|664955	mRNA_10736-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10736	CDS_10736	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_73:34324..36686+
coding sequence from alignment at scaffold_73:34324..36686+

mRNA sequence

>mRNA_10736 ID=mRNA_10736|Name=jgi.p|Nanoce1779_2|664955|organism=Nannochloropsis oceanica|type=mRNA|length=2363bp
ATGGTCCAGCATTATGGCCTTGAGGAATGGAGTCGCATGCGCCGAGCACT
CGTCACGCCCCCCTCGCATACGTGCCTCCGCGTCAATACCCTGAAGGCTG
AGGCAAAAGGGGTGCTAAAGGAGGTGGATGCATGGATTGACGATTACTAC
CGCGAGCGTTTTTCCAGCACCAACAACGACGACGCCCAGACTGAGGCCGA
AGTCCGTTCACCGCCACCACCGCCACGGCCCTATTTGCACCCCATGCCTC
CGCTTTCATTCGATACCATTATTATCCCCTCCCTCCCTCCACAAACCTCG
CACTCCTTTCCACTCCTTTCCTCGTCCTCCTCGTCCTCCACTTCCCATCC
CAAGCCCTTCACAGTGGTCGTCGACCGCCTGTGTGGCGAAGCCGTCTTGC
GTGGCGCCGATGTATTTGTCCGCGGAGCCTGGAGCGCCAGCCCCGGGATC
CATCCGGGATGCCGAGTCCTCCTGCTGATGGACCTACACCGCCAATCCCA
ACGGGGTTGTCTCTACAGCGACTACGAAGGAGAAGCCCTCTTAATCGGAC
AAGGCACCGCCGTCGTCTCCCGGACCGAACTTTTCACAGCCACCAAAGGC
CTGGGCATCCGTGTCACCCATCGCGTGGGTTTTCAAGCACCCCCTTTCAA
CGGCCTACTGCCCGGCGTCATCTTTCCCCAAAACCTCCCATCGCTCCTCG
TGGGCCACGTCCTCTCCCCGTCAGCTGGAAGCAGCGTCATCGACCTCTGT
GCCTGTCCCGGGGGCAAAGCCACCCATCTTGTCAGCCTCATGCGAGGAAA
AGGCCTGGTTGTCGCCTGTGATCGGAGCCGGAAAAAAGTCAAGGAGCTCA
AGGCTTTAAGTGAGGTGATGGGCATGTCCTCTTGCCTCTGCCCCCTCGTC
CTTGACTCCACCCACGCCGTCCTCCCCAAAACCCTCCGCCGTGCCCGAAC
CCTTCCTTCCTCCCAACCGCCTGCTCTCGTCGCCGCTACGCCCCGCGACA
AAGATGACCTCCATGCCGTGGAAGGTTTTTACCCCGAGACGTTCGACCAC
GTTTTGCTAGACCCTCCTTGCTCGGCGCTTGGCCTTCGTCCTCGCCTTTC
CGTCCCCACCACCGCCTCCGATCTGGACGCCTTTGTCTTATTCCAACAGC
AATTTTGGTGGTCGGCGGTGTTTCTGCTTAAGGTAGGTGGAAGCATGACG
TATTCCACGTGTACCATAAACCCGGCGGAGAACGAGGGCATGGTCAGGTT
CGCCTTAGACACTTACCCCTGCATGAGGCTGGTGCCGGCCGAGCCCCGCT
TGGGGAAGGCGGGCAGTAAGGGGGTGGAGGGAGAGGGACTGACAGAGGGG
GAGAGAGGGATGGTGCAGGTGTTTTTGCCGGGGGAGGGAAGGAGGGAGGG
CGAGGACAGGTTAGATATGAGTGGATTTTTTGTGGCCAAATTTGAGAAAG
TGAAGAGCGTGTTTGAGGAAGAGGAGGGGAAAGAAGAAAAAGAGGAAGAG
CGGGAAAATATGGGGGAAGGAGAGCAAGGTAAAAGGTAAAACAAATACGT
CGGAGAAGATCGGAAAGCGTATCACAAGGCGGGGCAGGAATCCCAAGCAC
GGGTGGACCATGGCGGCTTTGTCACGCATCTTGTGGGTGTCCCTTCTTTC
CTTCGCCCGACCATCTTCGATCTGTATCTTTTGCCATTCATTGATAGTAT
GAAGGCGCTGGCAGCTGCAGATGTAACCACTACTCTTGAATCATTCCCCT
GTACAAGATTACCATTCACTCTAAGCCCTTTCCCCTTCCTCTCTTTCTGC
CCCTCATCCCTCTCTACCCTTCTCTTCCTCTGTTCTCTTCCCTTGCTGTG
GTCTGAGGGTAGTCGGACTTGTGCTCCCATTCCTCATGTCTCTTTTTTTC
TCCCTTCATTTGTGGCTGAGTCTTATTATAGTTACATTTCTTTCACCTTA
TTCCTTCCCTTCCACATACGCCTTCCATCTCCTAACTTCTTCGTCTGTCT
CCCCATTCTTCGTTTGCCCTTCTCCTGTTTACATGCATGCTTCATTACAA
CGACTTTTTTTGGCTCCTACTACCTTTATCGGACTCTTTCGCTCCTTTCG
TACGACGGCCGTACCACTCCGGGAGTTAGCGACATCCGCTTCCCACACAC
CGCCCTACAAACACCCACGCAATCTCCTCCTTCGCTTCTTCTTCATTCTC
TCTTAAACTTGTTTCTATACACGATATAATTAAATCCTAATGACCCACTC
CTCCTTTCTTTCTTTCTTTCTTCCCTCCCCTCTTCTCTACGCACCCTCGC
TCACTTACAAGCCTCACGAGCAAGCGTCCTTATCTTCTCTTTTTCCTTCC
CATGCACATGCAT

protein sequence of jgi.p|Nanoce1779_2|664955

>mRNA_10736-protein ID=mRNA_10736-protein|Name=jgi.p|Nanoce1779_2|664955|organism=Nannochloropsis oceanica|type=polypeptide|length=513bp
MVQHYGLEEWSRMRRALVTPPSHTCLRVNTLKAEAKGVLKEVDAWIDDYY
RERFSSTNNDDAQTEAEVRSPPPPPRPYLHPMPPLSFDTIIIPSLPPQTS
HSFPLLSSSSSSSTSHPKPFTVVVDRLCGEAVLRGADVFVRGAWSASPGI
HPGCRVLLLMDLHRQSQRGCLYSDYEGEALLIGQGTAVVSRTELFTATKG
LGIRVTHRVGFQAPPFNGLLPGVIFPQNLPSLLVGHVLSPSAGSSVIDLC
ACPGGKATHLVSLMRGKGLVVACDRSRKKVKELKALSEVMGMSSCLCPLV
LDSTHAVLPKTLRRARTLPSSQPPALVAATPRDKDDLHAVEGFYPETFDH
VLLDPPCSALGLRPRLSVPTTASDLDAFVLFQQQFWWSAVFLLKVGGSMT
YSTCTINPAENEGMVRFALDTYPCMRLVPAEPRLGKAGSKGVEGEGLTEG
ERGMVQVFLPGEGRREGEDRLDMSGFFVAKFEKVKSVFEEEEGKEEKEEE
RENMGEGEQGKR*

mRNA from alignment at scaffold_73:34324..36686+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10736 ID=mRNA_10736|Name=jgi.p|Nanoce1779_2|664955|organism=Nannochloropsis oceanica|type=mRNA|length=2363bp|location=Sequence derived from alignment at scaffold_73:34324..36686+ (Nannochloropsis oceanica)
ATGGTCCAGCATTATGGCCTTGAGGAATGGAGTCGCATGCGCCGAGCACT
CGTCACGCCCCCCTCGCATACGTGCCTCCGCGTCAATACCCTGAAGGCTG
AGGCAAAAGGGGTGCTAAAGGAGGTGGATGCATGGATTGACGATTACTAC
CGCGAGCGTTTTTCCAGCACCAACAACGACGACGCCCAGACTGAGGCCGA
AGTCCGTTCACCGCCACCACCGCCACGGCCCTATTTGCACCCCATGCCTC
CGCTTTCATTCGATACCATTATTATCCCCTCCCTCCCTCCACAAACCTCG
CACTCCTTTCCACTCCTTTCCTCGTCCTCCTCGTCCTCCACTTCCCATCC
CAAGCCCTTCACAGTGGTCGTCGACCGCCTGTGTGGCGAAGCCGTCTTGC
GTGGCGCCGATGTATTTGTCCGCGGAGCCTGGAGCGCCAGCCCCGGGATC
CATCCGGGATGCCGAGTCCTCCTGCTGATGGACCTACACCGCCAATCCCA
ACGGGGTTGTCTCTACAGCGACTACGAAGGAGAAGCCCTCTTAATCGGAC
AAGGCACCGCCGTCGTCTCCCGGACCGAACTTTTCACAGCCACCAAAGGC
CTGGGCATCCGTGTCACCCATCGCGTGGGTTTTCAAGCACCCCCTTTCAA
CGGCCTACTGCCCGGCGTCATCTTTCCCCAAAACCTCCCATCGCTCCTCG
TGGGCCACGTCCTCTCCCCGTCAGCTGGAAGCAGCGTCATCGACCTCTGT
GCCTGTCCCGGGGGCAAAGCCACCCATCTTGTCAGCCTCATGCGAGGAAA
AGGCCTGGTTGTCGCCTGTGATCGGAGCCGGAAAAAAGTCAAGGAGCTCA
AGGCTTTAAGTGAGGTGATGGGCATGTCCTCTTGCCTCTGCCCCCTCGTC
CTTGACTCCACCCACGCCGTCCTCCCCAAAACCCTCCGCCGTGCCCGAAC
CCTTCCTTCCTCCCAACCGCCTGCTCTCGTCGCCGCTACGCCCCGCGACA
AAGATGACCTCCATGCCGTGGAAGGTTTTTACCCCGAGACGTTCGACCAC
GTTTTGCTAGACCCTCCTTGCTCGGCGCTTGGCCTTCGTCCTCGCCTTTC
CGTCCCCACCACCGCCTCCGATCTGGACGCCTTTGTCTTATTCCAACAGC
AATTTTGGTGGTCGGCGGTGTTTCTGCTTAAGGTAGGTGGAAGCATGACG
TATTCCACGTGTACCATAAACCCGGCGGAGAACGAGGGCATGGTCAGGTT
CGCCTTAGACACTTACCCCTGCATGAGGCTGGTGCCGGCCGAGCCCCGCT
TGGGGAAGGCGGGCAGTAAGGGGGTGGAGGGAGAGGGACTGACAGAGGGG
GAGAGAGGGATGGTGCAGGTGTTTTTGCCGGGGGAGGGAAGGAGGGAGGG
CGAGGACAGGTTAGATATGAGTGGATTTTTTGTGGCCAAATTTGAGAAAG
TGAAGAGCGTGTTTGAGGAAGAGGAGGGGAAAGAAGAAAAAGAGGAAGAG
CGGGAAAATATGGGGGAAGGAGAGCAAGGTAAAAGGTAAAACAAATACGT
CGGAGAAGATCGGAAAGCGTATCACAAGGCGGGGCAGGAATCCCAAGCAC
GGGTGGACCATGGCGGCTTTGTCACGCATCTTGTGGGTGTCCCTTCTTTC
CTTCGCCCGACCATCTTCGATCTGTATCTTTTGCCATTCATTGATAGTAT
GAAGGCGCTGGCAGCTGCAGATGTAACCACTACTCTTGAATCATTCCCCT
GTACAAGATTACCATTCACTCTAAGCCCTTTCCCCTTCCTCTCTTTCTGC
CCCTCATCCCTCTCTACCCTTCTCTTCCTCTGTTCTCTTCCCTTGCTGTG
GTCTGAGGGTAGTCGGACTTGTGCTCCCATTCCTCATGTCTCTTTTTTTC
TCCCTTCATTTGTGGCTGAGTCTTATTATAGTTACATTTCTTTCACCTTA
TTCCTTCCCTTCCACATACGCCTTCCATCTCCTAACTTCTTCGTCTGTCT
CCCCATTCTTCGTTTGCCCTTCTCCTGTTTACATGCATGCTTCATTACAA
CGACTTTTTTTGGCTCCTACTACCTTTATCGGACTCTTTCGCTCCTTTCG
TACGACGGCCGTACCACTCCGGGAGTTAGCGACATCCGCTTCCCACACAC
CGCCCTACAAACACCCACGCAATCTCCTCCTTCGCTTCTTCTTCATTCTC
TCTTAAACTTGTTTCTATACACGATATAATTAAATCCTAATGACCCACTC
CTCCTTTCTTTCTTTCTTTCTTCCCTCCCCTCTTCTCTACGCACCCTCGC
TCACTTACAAGCCTCACGAGCAAGCGTCCTTATCTTCTCTTTTTCCTTCC
CATGCACATGCAT

Coding sequence (CDS) from alignment at scaffold_73:34324..36686+

>mRNA_10736 ID=mRNA_10736|Name=jgi.p|Nanoce1779_2|664955|organism=Nannochloropsis oceanica|type=CDS|length=1539bp|location=Sequence derived from alignment at scaffold_73:34324..36686+ (Nannochloropsis oceanica)
ATGGTCCAGCATTATGGCCTTGAGGAATGGAGTCGCATGCGCCGAGCACT
CGTCACGCCCCCCTCGCATACGTGCCTCCGCGTCAATACCCTGAAGGCTG
AGGCAAAAGGGGTGCTAAAGGAGGTGGATGCATGGATTGACGATTACTAC
CGCGAGCGTTTTTCCAGCACCAACAACGACGACGCCCAGACTGAGGCCGA
AGTCCGTTCACCGCCACCACCGCCACGGCCCTATTTGCACCCCATGCCTC
CGCTTTCATTCGATACCATTATTATCCCCTCCCTCCCTCCACAAACCTCG
CACTCCTTTCCACTCCTTTCCTCGTCCTCCTCGTCCTCCACTTCCCATCC
CAAGCCCTTCACAGTGGTCGTCGACCGCCTGTGTGGCGAAGCCGTCTTGC
GTGGCGCCGATGTATTTGTCCGCGGAGCCTGGAGCGCCAGCCCCGGGATC
CATCCGGGATGCCGAGTCCTCCTGCTGATGGACCTACACCGCCAATCCCA
ACGGGGTTGTCTCTACAGCGACTACGAAGGAGAAGCCCTCTTAATCGGAC
AAGGCACCGCCGTCGTCTCCCGGACCGAACTTTTCACAGCCACCAAAGGC
CTGGGCATCCGTGTCACCCATCGCGTGGGTTTTCAAGCACCCCCTTTCAA
CGGCCTACTGCCCGGCGTCATCTTTCCCCAAAACCTCCCATCGCTCCTCG
TGGGCCACGTCCTCTCCCCGTCAGCTGGAAGCAGCGTCATCGACCTCTGT
GCCTGTCCCGGGGGCAAAGCCACCCATCTTGTCAGCCTCATGCGAGGAAA
AGGCCTGGTTGTCGCCTGTGATCGGAGCCGGAAAAAAGTCAAGGAGCTCA
AGGCTTTAAGTGAGGTGATGGGCATGTCCTCTTGCCTCTGCCCCCTCGTC
CTTGACTCCACCCACGCCGTCCTCCCCAAAACCCTCCGCCGTGCCCGAAC
CCTTCCTTCCTCCCAACCGCCTGCTCTCGTCGCCGCTACGCCCCGCGACA
AAGATGACCTCCATGCCGTGGAAGGTTTTTACCCCGAGACGTTCGACCAC
GTTTTGCTAGACCCTCCTTGCTCGGCGCTTGGCCTTCGTCCTCGCCTTTC
CGTCCCCACCACCGCCTCCGATCTGGACGCCTTTGTCTTATTCCAACAGC
AATTTTGGTGGTCGGCGGTGTTTCTGCTTAAGGTAGGTGGAAGCATGACG
TATTCCACGTGTACCATAAACCCGGCGGAGAACGAGGGCATGGTCAGGTT
CGCCTTAGACACTTACCCCTGCATGAGGCTGGTGCCGGCCGAGCCCCGCT
TGGGGAAGGCGGGCAGTAAGGGGGTGGAGGGAGAGGGACTGACAGAGGGG
GAGAGAGGGATGGTGCAGGTGTTTTTGCCGGGGGAGGGAAGGAGGGAGGG
CGAGGACAGGTTAGATATGAGTGGATTTTTTGTGGCCAAATTTGAGAAAG
TGAAGAGCGTGTTTGAGGAAGAGGAGGGGAAAGAAGAAAAAGAGGAAGAG
CGGGAAAATATGGGGGAAGGAGAGCAAGGTAAAAGGTAA

Synonyms

Publications