jgi.p|Nanoce1779_2|408473, mRNA_10735 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|408473
Unique NamemRNA_10735
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length928
Alignment locationscaffold_73:31075..32453 -

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Properties
Property NameValue
TranscriptId408559
TrackFilteredModels2
ProteinId408473
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_73supercontigscaffold_73:31075..32453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|408473gene_10735Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|408473mRNA_10735-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10735CDS_10735Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10735 ID=mRNA_10735|Name=jgi.p|Nanoce1779_2|408473|organism=Nannochloropsis oceanica|type=mRNA|length=928bp
CCGACCCACAATTACCCTTACCTCACACAACCAACTAATAGTAGGAATGT
ACGCCACGCTTGGGGATCCTAGAGAAAAACACCCCCTAATCCTGCACGCG
GCCACCTCTTCCTACATCGGCGGGGTGTCATCGCAGCGTTCCCCCCCCGG
CAGTGCGCGGGATGATGAAGAAGAGCGTGCAGAGCTGGGTGCATTGTCCG
GCGGGAAGCACAGCGAGAAGCATGTGCGGCTGCCCGCCGAAGGCGAGGAG
GGAGGGCAACAAGGCGAGGTGGGCAATGGGGTTAGAAAACGACGACCAAG
CTTTGTGCAGCAGATGACACGATCACTGTCACGAGTTTTGACACCGGAGG
ACCTGGCCGACTGGCGCGCGGAGCATTCCTACCGCACGATCATCTTCATG
ACCTCAGACCACATGTATTACTCGTTCTATGTGCGTGTCAGGGGGAGGAA
GTGGAAGCGAGAAGCGGGATTGTTGGGACTGTTTGTCCTCTCGGACAATT
TACCTGATTTGCCTCACCTCGTCCCGTCTTTCCTGTCCCTCTTATCAGGC
CTGGCTCTATGGGTTCGTCATGTGCGCCGCCACGGCCATCTCCTGCATCG
CTTTCGTCCTCTCCACCATGCCCGAGTTCACTTACATCCCGCACAACTGC
AAACACCCTATTTGTGTCCCGGGTGCTCCAGGTGCGGTCTGCGACCAAGT
AATTTGCTTCCCGGAGCCTCTCCCCTACCTTGACAAGACCGAGACGATAA
CCCTCTGCCTTTTCATATTCGACTACCTCCTTCGAGTGTGCACCGTCCAC
GCCGTCCCTCAGCGCCTCATTTACTGGGATGGCCGCCGTATCAACGAGGA
CACTACGGTACGTCCATCACCCTCCTGCTGGCCCTCTCTCTTTATCTCAT
TGGATTCTTCAACACCCCTCCCTCCCTC
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protein sequence of jgi.p|Nanoce1779_2|408473

>mRNA_10735-protein ID=mRNA_10735-protein|Name=jgi.p|Nanoce1779_2|408473|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MYATLGDPREKHPLILHAATSSYIGGVSSQRSPPGSARDDEEERAELGAL
SGGKHSEKHVRLPAEGEEGGQQGEVGNGVRKRRPSFVQQMTRSLSRVLTP
EDLADWRAEHSYRTIIFMTSDHMYYSFYVRVRGRKWKREAGLLGLFVLSD
NLPDLPHLVPSFLSLLSGLALWVRHVRRHGHLLHRFRPLHHARVHLHPAQ
LQTPYLCPGCSRCGLRPSNLLPGASPLP*
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mRNA from alignment at scaffold_73:31075..32453-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10735 ID=mRNA_10735|Name=jgi.p|Nanoce1779_2|408473|organism=Nannochloropsis oceanica|type=mRNA|length=1379bp|location=Sequence derived from alignment at scaffold_73:31075..32453- (Nannochloropsis oceanica)
CCGACCCACAATTACCCTTACCTCACACAACCAACTAATAGTAGGAATGT
ACGCCACGCTTGGGGATCCTAGAGAAAAACACCCGTAAGTTCTCTTTCTG
CTTCTTTGTTTTGTCCCCACCATTATGTGAGCCTCTCTTATCCCCCCCTC
CACTTTATTAGCCTAATCCTGCACGCGGCCACCTCTTCCTACATCGGCGG
GGTGTCATCGCAGCGTTCCCCCCCCGGCAGTGCGCGGGATGATGAAGAAG
AGCGTGCAGAGGTGAGCATGGAGAGTAAGAGGGCGACAGTTGGAAATGCG
CAGTATAGATGAAAATGACCGCCACCGTTACATCCACGTGCTCCCTGTGT
GTCTTAATCTGCCTGTGTTAAAATGAGAAGTGTAAGCCATGGCATCATAC
TTTCCTCCCCCCCATTTACTCATTTCGTCCATATTTTAAACGGCACATCA
AAGCTGGGTGCATTGTCCGGCGGGAAGCACAGCGAGAAGCATGTGCGGCT
GCCCGCCGAAGGCGAGGAGGGAGGGCAACAAGGCGAGGTGGGCAATGGGG
TTAGAAAACGACGACCAAGCTTTGTGCAGCAGATGACACGATCACTGTCA
CGAGTTTTGACACCGGTACGTAGGGAAGGAGATAGGAAGGGAAAGTGGAA
GGGGAAAAGGGGGGAAGGGGGGATTGGAGACCAAGCCTTTGAAATAGAAG
TAAACATACGCGTCGATAAAATATGAGTGAATTAAAACTGACAACAGAAA
TGTTTTACGCTTTCCTCTTCCTCCTTTCTTTTTTTCTTTTTTCGCAGGAG
GACCTGGCCGACTGGCGCGCGGAGCATTCCTACCGCACGATCATCTTCAT
GACCTCAGACCACATGTATTACTCGTTCTATGTGCGTGTCAGGGGGAGGA
AGTGGAAGCGAGAAGCGGGATTGTTGGGACTGTTTGTCCTCTCGGACAAT
TTACCTGATTTGCCTCACCTCGTCCCGTCTTTCCTGTCCCTCTTATCAGG
CCTGGCTCTATGGGTTCGTCATGTGCGCCGCCACGGCCATCTCCTGCATC
GCTTTCGTCCTCTCCACCATGCCCGAGTTCACTTACATCCCGCACAACTG
CAAACACCCTATTTGTGTCCCGGGTGCTCCAGGTGCGGTCTGCGACCAAG
TAATTTGCTTCCCGGAGCCTCTCCCCTACCTTGACAAGACCGAGACGATA
ACCCTCTGCCTTTTCATATTCGACTACCTCCTTCGAGTGTGCACCGTCCA
CGCCGTCCCTCAGCGCCTCATTTACTGGGATGGCCGCCGTATCAACGAGG
ACACTACGGTACGTCCATCACCCTCCTGCTGGCCCTCTCTCTTTATCTCA
TTGGATTCTTCAACACCCCTCCCTCCCTC
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Coding sequence (CDS) from alignment at scaffold_73:31075..32453-

>mRNA_10735 ID=mRNA_10735|Name=jgi.p|Nanoce1779_2|408473|organism=Nannochloropsis oceanica|type=CDS|length=2748bp|location=Sequence derived from alignment at scaffold_73:31075..32453- (Nannochloropsis oceanica)
GAGGACCTGGCCGACTGGCGCGCGGAGCATTCCTACCGCACGATCATCTT
CATGACCTCAGACCACATGTATTACTCGTTCTATGTGCGTGTCAGGGGGA
GGAAGTGGAAGCGAGAAGCGGGATTGTTGGGACTGTTTGTCCTCTCGGAC
AATTTACCTGATTTGCCTCACCTCGTCCCGTCTTTCCTGTCCCTCTTATC
AGGCCTGGCTCTATGGGTTCGTCATGTGCGCCGCCACGGCCATCTCCTGC
ATCGCTTTCGTCCTCTCCACCATGCCCGAGTTCACTTACATCCCGCACAA
CTGCAAACACCCTATTTGTGTCCCGGGTGCTCCAGGTGCGGTCTGCGACC
AAGTAATTTGCTTCCCGGAGCCTCTCCCCTACCTTGACTGGGTGCATTGT
CCGGCGGGAAGCACAGCGAGAAGCATGTGCGGCTGCCCGCCGAAGGCGAG
GAGGGAGGGCAACAAGGCGAGGTGGGCAATGGGGTTAGAAAACGACGACC
AAGCTTTGTGCAGCAGATGACACGATCACTGTCACGAGTTTTGACACCGC
CTAATCCTGCACGCGGCCACCTCTTCCTACATCGGCGGGGTGTCATCGCA
GCGTTCCCCCCCCGGCAGTGCGCGGGATGATGAAGAAGAGCGTGCAGAGA
TGTACGCCACGCTTGGGGATCCTAGAGAAAAACACCCGAGGACCTGGCCG
ACTGGCGCGCGGAGCATTCCTACCGCACGATCATCTTCATGACCTCAGAC
CACATGTATTACTCGTTCTATGTGCGTGTCAGGGGGAGGAAGTGGAAGCG
AGAAGCGGGATTGTTGGGACTGTTTGTCCTCTCGGACAATTTACCTGATT
TGCCTCACCTCGTCCCGTCTTTCCTGTCCCTCTTATCAGGCCTGGCTCTA
TGGGTTCGTCATGTGCGCCGCCACGGCCATCTCCTGCATCGCTTTCGTCC
TCTCCACCATGCCCGAGTTCACTTACATCCCGCACAACTGCAAACACCCT
ATTTGTGTCCCGGGTGCTCCAGGTGCGGTCTGCGACCAAGTAATTTGCTT
CCCGGAGCCTCTCCCCTACCTTGACTGGGTGCATTGTCCGGCGGGAAGCA
CAGCGAGAAGCATGTGCGGCTGCCCGCCGAAGGCGAGGAGGGAGGGCAAC
AAGGCGAGGTGGGCAATGGGGTTAGAAAACGACGACCAAGCTTTGTGCAG
CAGATGACACGATCACTGTCACGAGTTTTGACACCGCCTAATCCTGCACG
CGGCCACCTCTTCCTACATCGGCGGGGTGTCATCGCAGCGTTCCCCCCCC
GGCAGTGCGCGGGATGATGAAGAAGAGCGTGCAGAGATGTACGCCACGCT
TGGGGATCCTAGAGAAAAACACCCGAGGACCTGGCCGACTGGCGCGCGGA
GCATTCCTACCGCACGATCATCTTCATGACCTCAGACCACATGTATTACT
CGTTCTATGTGCGTGTCAGGGGGAGGAAGTGGAAGCGAGAAGCGGGATTG
TTGGGACTGTTTGTCCTCTCGGACAATTTACCTGATTTGCCTCACCTCGT
CCCGTCTTTCCTGTCCCTCTTATCAGGCCTGGCTCTATGGGTTCGTCATG
TGCGCCGCCACGGCCATCTCCTGCATCGCTTTCGTCCTCTCCACCATGCC
CGAGTTCACTTACATCCCGCACAACTGCAAACACCCTATTTGTGTCCCGG
GTGCTCCAGGTGCGGTCTGCGACCAAGTAATTTGCTTCCCGGAGCCTCTC
CCCTACCTTGACTGGGTGCATTGTCCGGCGGGAAGCACAGCGAGAAGCAT
GTGCGGCTGCCCGCCGAAGGCGAGGAGGGAGGGCAACAAGGCGAGGTGGG
CAATGGGGTTAGAAAACGACGACCAAGCTTTGTGCAGCAGATGACACGAT
CACTGTCACGAGTTTTGACACCGCCTAATCCTGCACGCGGCCACCTCTTC
CTACATCGGCGGGGTGTCATCGCAGCGTTCCCCCCCCGGCAGTGCGCGGG
ATGATGAAGAAGAGCGTGCAGAGATGTACGCCACGCTTGGGGATCCTAGA
GAAAAACACCCGAGGACCTGGCCGACTGGCGCGCGGAGCATTCCTACCGC
ACGATCATCTTCATGACCTCAGACCACATGTATTACTCGTTCTATGTGCG
TGTCAGGGGGAGGAAGTGGAAGCGAGAAGCGGGATTGTTGGGACTGTTTG
TCCTCTCGGACAATTTACCTGATTTGCCTCACCTCGTCCCGTCTTTCCTG
TCCCTCTTATCAGGCCTGGCTCTATGGGTTCGTCATGTGCGCCGCCACGG
CCATCTCCTGCATCGCTTTCGTCCTCTCCACCATGCCCGAGTTCACTTAC
ATCCCGCACAACTGCAAACACCCTATTTGTGTCCCGGGTGCTCCAGGTGC
GGTCTGCGACCAAGTAATTTGCTTCCCGGAGCCTCTCCCCTACCTTGACT
GGGTGCATTGTCCGGCGGGAAGCACAGCGAGAAGCATGTGCGGCTGCCCG
CCGAAGGCGAGGAGGGAGGGCAACAAGGCGAGGTGGGCAATGGGGTTAGA
AAACGACGACCAAGCTTTGTGCAGCAGATGACACGATCACTGTCACGAGT
TTTGACACCGCCTAATCCTGCACGCGGCCACCTCTTCCTACATCGGCGGG
GTGTCATCGCAGCGTTCCCCCCCCGGCAGTGCGCGGGATGATGAAGAAGA
GCGTGCAGAGATGTACGCCACGCTTGGGGATCCTAGAGAAAAACACCC
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Synonyms
Publications