jgi.p|Nanoce1779_2|636321, mRNA_1073 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|636321
Unique Name	mRNA_1073
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2031
Alignment location	scaffold_2:1155540..1157570 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	636407
Track	FilteredModels2
ProteinId	636321

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1155540..1157570 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|636321	gene_1073	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|636321	mRNA_1073-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1073	CDS_1073	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1155540..1157570+
coding sequence from alignment at scaffold_2:1155540..1157570+

mRNA sequence

>mRNA_1073 ID=mRNA_1073|Name=jgi.p|Nanoce1779_2|636321|organism=Nannochloropsis oceanica|type=mRNA|length=2031bp
ATGCTTGAGCGGATAAGAAGTCGGTTGGGCTTTGCCTGGGCGCGGTCATC
TTGTCAACAGCAGCAGAGGGGGGAGGAGCACGAGCACGAGCACGAGCACG
AGCACGAGCACAAGCACGAGCAGGACAAAGCAGCCTTACCATCATCCGCA
TCTGCCACGACCACGCAGAGTAGAGTAGGACAAGGTGCAGGGGAATCACA
CCAATATGCCATTGTCATAGACGGAGGGAGCACAGGCAGTCGTATGTTTG
TCTACCGATTCTTCTACCCCGGCCATGGGGCCAAGCGGGAGATCGATTGC
TTGTCCAGTAAAAAAGTCACTCCTGGCTTGAGTTCTTTGGATGGACACCC
GGAGCAGGCAGCGGAGTATATGCGTCCTTTATTTGAGCATGCCGCGACTG
TTATTCCAGAGTCATACCAGAGGGAGACCCTTGTGTTTATTCAGGCGACC
GCAGGGATGCGATTGCTATCTGAGGAGAGCCAGGAGGCGATCTACGATGG
CTTATATGTAGATTTGACCCAGAATAAATGCAGGAAGGAGGAGGGAGAGG
GAGATTTCTTGTTTCCCTTTCGACTCTACCGGAAGAACATCGGGACCCTG
TCGGGGAGGTTGGAGGGGTTTTATGCCGCCTTGTCTGTGAATTATTTGAC
GGGGAGGATAGACACGCATTTGGAGAGGGAGCGTAAGTCAGGGGAGGCAG
CGGAGGGGGCAGATGAGGTGGAGGTGACTGTTGAAGCCAGCAGTGCCAGC
GGCAGTAAGCGAGGACCGACGCAAACCTTGGTAGGTGCCTTGGACCTAGG
CGGGTCTTCCACTCAGATCGTGTTTCAGCACATGGAGGACTCGGGCGCGG
CACTAAACCAATCTGATTTTTGGGTTCAGTCGTATTTGGCCTACGGTGTT
GACACAATAAGGTATCGGTTGTGGTCGCATTTGACGAGGCACGTGGCGCC
GATGGATCCGGCGGTGGTGGCGGGGGCGGCGGTTGAGAACCCGTGTGCTT
TCTCGGGGCATCAGGAGTGGTTCAAGGGGCACCGGTTGGTAGGGACAGGG
GAGGCGGAGTTGTGTGGGAAGGAGATACGGAAGATGTTGTGGGATGAGGA
GCATGAGAGATGTACGCCCCATGAGCCCTGTGGTCTGGATGGGGTACGGC
ACCCGCCGTTGACAGGGCAGTTTCTGGCCATGTCGGTTTTCTTTTTTGCA
TTGGATTGTATGAAACAGCTGGGCCCGTTAGATTTACCGCATTGGCCGAG
TCCGAGCATTGATGAGATTGAGACGGCGGCGTCCAAGTTTTGTGCGCAGC
CGTGGGGGAGCCTGAATACGAGCAGTACCAACCATGCCTTCACGCGCGAC
GACCTCTTGCCTTATCGGTGCGCGGAGGTGGTGTACATTCATACGTTGCT
GAAACACGGATACGGTTTCCCGGGGGACTCACGAGATGTGACGTTCGTGC
TTGACATTGAGGGGATGGAGGTGGAGTGGACCCTGGGCTTCGCGCTGTCG
GAAGTGCCTTTGGACCAGGAGGAGGCTGAAAAGGGGACTGCGGCGACGTT
GCCCCATCACCACGTTTATTTGGATGAGGCGGATCGGGAGGAGCAGAAGG
AACAGGCGGCGATGAAGGAGAGGATGCGAAGGGAGGGGGAGGGAGGGAAG
GAGGGACGGCATGTTAAAGGTGCGGTGGGGGCGGAGGCGGAGGTCGAGGC
AAGGGACAAAGAGGAGGAGCATGGATGTACAGGTGGCAGTAAGCTCGCGC
AAGGGGAGCCCCCAAGATGGGGAAATGGGTGGCAAAGTCTGAATTTCGAC
CTCTCGGAGGTCCATCGCATGGCTTCGGCATGGCAGCAGCAGGCGAGGAG
AGGAGGAGCAGGAGGAGGAGGAGGGATGGCTTGGACGTGGTGGGATCTAG
GGGTGTGTGCTTTGACTACGGCTGGGACTTCATTGCTGGTAGCGTTGGTT
CTTGTTTTTTGGAGGGGAGATAGGGAGTGGTTGTCGAGCTCGCCCATGCC
CTCGCCGCCGGGGACGCCGAAGCAGGCATAG

protein sequence of jgi.p|Nanoce1779_2|636321

>mRNA_1073-protein ID=mRNA_1073-protein|Name=jgi.p|Nanoce1779_2|636321|organism=Nannochloropsis oceanica|type=polypeptide|length=677bp
MLERIRSRLGFAWARSSCQQQQRGEEHEHEHEHEHEHKHEQDKAALPSSA
SATTTQSRVGQGAGESHQYAIVIDGGSTGSRMFVYRFFYPGHGAKREIDC
LSSKKVTPGLSSLDGHPEQAAEYMRPLFEHAATVIPESYQRETLVFIQAT
AGMRLLSEESQEAIYDGLYVDLTQNKCRKEEGEGDFLFPFRLYRKNIGTL
SGRLEGFYAALSVNYLTGRIDTHLERERKSGEAAEGADEVEVTVEASSAS
GSKRGPTQTLVGALDLGGSSTQIVFQHMEDSGAALNQSDFWVQSYLAYGV
DTIRYRLWSHLTRHVAPMDPAVVAGAAVENPCAFSGHQEWFKGHRLVGTG
EAELCGKEIRKMLWDEEHERCTPHEPCGLDGVRHPPLTGQFLAMSVFFFA
LDCMKQLGPLDLPHWPSPSIDEIETAASKFCAQPWGSLNTSSTNHAFTRD
DLLPYRCAEVVYIHTLLKHGYGFPGDSRDVTFVLDIEGMEVEWTLGFALS
EVPLDQEEAEKGTAATLPHHHVYLDEADREEQKEQAAMKERMRREGEGGK
EGRHVKGAVGAEAEVEARDKEEEHGCTGGSKLAQGEPPRWGNGWQSLNFD
LSEVHRMASAWQQQARRGGAGGGGGMAWTWWDLGVCALTTAGTSLLVALV
LVFWRGDREWLSSSPMPSPPGTPKQA*

mRNA from alignment at scaffold_2:1155540..1157570+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1073 ID=mRNA_1073|Name=jgi.p|Nanoce1779_2|636321|organism=Nannochloropsis oceanica|type=mRNA|length=2031bp|location=Sequence derived from alignment at scaffold_2:1155540..1157570+ (Nannochloropsis oceanica)
ATGCTTGAGCGGATAAGAAGTCGGTTGGGCTTTGCCTGGGCGCGGTCATC
TTGTCAACAGCAGCAGAGGGGGGAGGAGCACGAGCACGAGCACGAGCACG
AGCACGAGCACAAGCACGAGCAGGACAAAGCAGCCTTACCATCATCCGCA
TCTGCCACGACCACGCAGAGTAGAGTAGGACAAGGTGCAGGGGAATCACA
CCAATATGCCATTGTCATAGACGGAGGGAGCACAGGCAGTCGTATGTTTG
TCTACCGATTCTTCTACCCCGGCCATGGGGCCAAGCGGGAGATCGATTGC
TTGTCCAGTAAAAAAGTCACTCCTGGCTTGAGTTCTTTGGATGGACACCC
GGAGCAGGCAGCGGAGTATATGCGTCCTTTATTTGAGCATGCCGCGACTG
TTATTCCAGAGTCATACCAGAGGGAGACCCTTGTGTTTATTCAGGCGACC
GCAGGGATGCGATTGCTATCTGAGGAGAGCCAGGAGGCGATCTACGATGG
CTTATATGTAGATTTGACCCAGAATAAATGCAGGAAGGAGGAGGGAGAGG
GAGATTTCTTGTTTCCCTTTCGACTCTACCGGAAGAACATCGGGACCCTG
TCGGGGAGGTTGGAGGGGTTTTATGCCGCCTTGTCTGTGAATTATTTGAC
GGGGAGGATAGACACGCATTTGGAGAGGGAGCGTAAGTCAGGGGAGGCAG
CGGAGGGGGCAGATGAGGTGGAGGTGACTGTTGAAGCCAGCAGTGCCAGC
GGCAGTAAGCGAGGACCGACGCAAACCTTGGTAGGTGCCTTGGACCTAGG
CGGGTCTTCCACTCAGATCGTGTTTCAGCACATGGAGGACTCGGGCGCGG
CACTAAACCAATCTGATTTTTGGGTTCAGTCGTATTTGGCCTACGGTGTT
GACACAATAAGGTATCGGTTGTGGTCGCATTTGACGAGGCACGTGGCGCC
GATGGATCCGGCGGTGGTGGCGGGGGCGGCGGTTGAGAACCCGTGTGCTT
TCTCGGGGCATCAGGAGTGGTTCAAGGGGCACCGGTTGGTAGGGACAGGG
GAGGCGGAGTTGTGTGGGAAGGAGATACGGAAGATGTTGTGGGATGAGGA
GCATGAGAGATGTACGCCCCATGAGCCCTGTGGTCTGGATGGGGTACGGC
ACCCGCCGTTGACAGGGCAGTTTCTGGCCATGTCGGTTTTCTTTTTTGCA
TTGGATTGTATGAAACAGCTGGGCCCGTTAGATTTACCGCATTGGCCGAG
TCCGAGCATTGATGAGATTGAGACGGCGGCGTCCAAGTTTTGTGCGCAGC
CGTGGGGGAGCCTGAATACGAGCAGTACCAACCATGCCTTCACGCGCGAC
GACCTCTTGCCTTATCGGTGCGCGGAGGTGGTGTACATTCATACGTTGCT
GAAACACGGATACGGTTTCCCGGGGGACTCACGAGATGTGACGTTCGTGC
TTGACATTGAGGGGATGGAGGTGGAGTGGACCCTGGGCTTCGCGCTGTCG
GAAGTGCCTTTGGACCAGGAGGAGGCTGAAAAGGGGACTGCGGCGACGTT
GCCCCATCACCACGTTTATTTGGATGAGGCGGATCGGGAGGAGCAGAAGG
AACAGGCGGCGATGAAGGAGAGGATGCGAAGGGAGGGGGAGGGAGGGAAG
GAGGGACGGCATGTTAAAGGTGCGGTGGGGGCGGAGGCGGAGGTCGAGGC
AAGGGACAAAGAGGAGGAGCATGGATGTACAGGTGGCAGTAAGCTCGCGC
AAGGGGAGCCCCCAAGATGGGGAAATGGGTGGCAAAGTCTGAATTTCGAC
CTCTCGGAGGTCCATCGCATGGCTTCGGCATGGCAGCAGCAGGCGAGGAG
AGGAGGAGCAGGAGGAGGAGGAGGGATGGCTTGGACGTGGTGGGATCTAG
GGGTGTGTGCTTTGACTACGGCTGGGACTTCATTGCTGGTAGCGTTGGTT
CTTGTTTTTTGGAGGGGAGATAGGGAGTGGTTGTCGAGCTCGCCCATGCC
CTCGCCGCCGGGGACGCCGAAGCAGGCATAG

Coding sequence (CDS) from alignment at scaffold_2:1155540..1157570+

>mRNA_1073 ID=mRNA_1073|Name=jgi.p|Nanoce1779_2|636321|organism=Nannochloropsis oceanica|type=CDS|length=2031bp|location=Sequence derived from alignment at scaffold_2:1155540..1157570+ (Nannochloropsis oceanica)
ATGCTTGAGCGGATAAGAAGTCGGTTGGGCTTTGCCTGGGCGCGGTCATC
TTGTCAACAGCAGCAGAGGGGGGAGGAGCACGAGCACGAGCACGAGCACG
AGCACGAGCACAAGCACGAGCAGGACAAAGCAGCCTTACCATCATCCGCA
TCTGCCACGACCACGCAGAGTAGAGTAGGACAAGGTGCAGGGGAATCACA
CCAATATGCCATTGTCATAGACGGAGGGAGCACAGGCAGTCGTATGTTTG
TCTACCGATTCTTCTACCCCGGCCATGGGGCCAAGCGGGAGATCGATTGC
TTGTCCAGTAAAAAAGTCACTCCTGGCTTGAGTTCTTTGGATGGACACCC
GGAGCAGGCAGCGGAGTATATGCGTCCTTTATTTGAGCATGCCGCGACTG
TTATTCCAGAGTCATACCAGAGGGAGACCCTTGTGTTTATTCAGGCGACC
GCAGGGATGCGATTGCTATCTGAGGAGAGCCAGGAGGCGATCTACGATGG
CTTATATGTAGATTTGACCCAGAATAAATGCAGGAAGGAGGAGGGAGAGG
GAGATTTCTTGTTTCCCTTTCGACTCTACCGGAAGAACATCGGGACCCTG
TCGGGGAGGTTGGAGGGGTTTTATGCCGCCTTGTCTGTGAATTATTTGAC
GGGGAGGATAGACACGCATTTGGAGAGGGAGCGTAAGTCAGGGGAGGCAG
CGGAGGGGGCAGATGAGGTGGAGGTGACTGTTGAAGCCAGCAGTGCCAGC
GGCAGTAAGCGAGGACCGACGCAAACCTTGGTAGGTGCCTTGGACCTAGG
CGGGTCTTCCACTCAGATCGTGTTTCAGCACATGGAGGACTCGGGCGCGG
CACTAAACCAATCTGATTTTTGGGTTCAGTCGTATTTGGCCTACGGTGTT
GACACAATAAGGTATCGGTTGTGGTCGCATTTGACGAGGCACGTGGCGCC
GATGGATCCGGCGGTGGTGGCGGGGGCGGCGGTTGAGAACCCGTGTGCTT
TCTCGGGGCATCAGGAGTGGTTCAAGGGGCACCGGTTGGTAGGGACAGGG
GAGGCGGAGTTGTGTGGGAAGGAGATACGGAAGATGTTGTGGGATGAGGA
GCATGAGAGATGTACGCCCCATGAGCCCTGTGGTCTGGATGGGGTACGGC
ACCCGCCGTTGACAGGGCAGTTTCTGGCCATGTCGGTTTTCTTTTTTGCA
TTGGATTGTATGAAACAGCTGGGCCCGTTAGATTTACCGCATTGGCCGAG
TCCGAGCATTGATGAGATTGAGACGGCGGCGTCCAAGTTTTGTGCGCAGC
CGTGGGGGAGCCTGAATACGAGCAGTACCAACCATGCCTTCACGCGCGAC
GACCTCTTGCCTTATCGGTGCGCGGAGGTGGTGTACATTCATACGTTGCT
GAAACACGGATACGGTTTCCCGGGGGACTCACGAGATGTGACGTTCGTGC
TTGACATTGAGGGGATGGAGGTGGAGTGGACCCTGGGCTTCGCGCTGTCG
GAAGTGCCTTTGGACCAGGAGGAGGCTGAAAAGGGGACTGCGGCGACGTT
GCCCCATCACCACGTTTATTTGGATGAGGCGGATCGGGAGGAGCAGAAGG
AACAGGCGGCGATGAAGGAGAGGATGCGAAGGGAGGGGGAGGGAGGGAAG
GAGGGACGGCATGTTAAAGGTGCGGTGGGGGCGGAGGCGGAGGTCGAGGC
AAGGGACAAAGAGGAGGAGCATGGATGTACAGGTGGCAGTAAGCTCGCGC
AAGGGGAGCCCCCAAGATGGGGAAATGGGTGGCAAAGTCTGAATTTCGAC
CTCTCGGAGGTCCATCGCATGGCTTCGGCATGGCAGCAGCAGGCGAGGAG
AGGAGGAGCAGGAGGAGGAGGAGGGATGGCTTGGACGTGGTGGGATCTAG
GGGTGTGTGCTTTGACTACGGCTGGGACTTCATTGCTGGTAGCGTTGGTT
CTTGTTTTTTGGAGGGGAGATAGGGAGTGGTTGTCGAGCTCGCCCATGCC
CTCGCCGCCGGGGACGCCGAAGCAGGCATAG

Synonyms

Publications