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Properties
| Property Name | Value |
|---|
| TranscriptId | 613408 |
| Track | FilteredModels2 |
| ProteinId | 613322 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_73 | supercontig | scaffold_73:12..2645 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10725 ID=mRNA_10725|Name=jgi.p|Nanoce1779_2|613322|organism=Nannochloropsis oceanica|type=mRNA|length=1637bp
AACAACCGCCACGGCAGCTGGGGCGCCGGTCTCATTCTTATTCCTCAAGC
GGCAAGTCATCATCCTCTGGCTCGGGGGGCAACGACGTCTTCGTGAGCGG
CTCTTACAGCAGCGACAGCGGGCACACGTCAGGCTGTGGGAGTGCGACAA
GTGTCGTCATCGAGGCCCCTCCTACCACCACCACTGCTCCTTCCCTCCCT
CTCCCACGGGGACATTCGAGTGAGCTGATGGCGCAGGGCAGCGAAGCAAA
GAGTAGAAAGAGGAAGCGCAAGCGGAACCTAAGGCTGAGGACTATCAAGG
CTCAGCGGGAGGAATTACCACGGGTGGCACATGCTTGGGCTTGGGTCGAA
GAGCTAGACGAGCTACAGTGCGAGATGAAGGCGGGCCGAGTTTTTTCGGG
TTTCTCTGAGGGGGAGATTGCCTTTCCTCCCTCCTTCCGCTGGCGCCGTG
GGGCCGTGGCGGGGGACTTTACGGACAGGGAAAGGCTGGCCGCGAGCTAC
GTGCTTCAGAAGAAGGGAGATGGACAGCGCGTACCATCGTACACGGATCG
GATTCTCTTTCACTCTCTGGCAGACGTCCGCACCTCCCTCTCACTCCTGG
CCTACGAGATGTGCGACGCCGTGACGGGTTCCGACCACCGCCCTGTCTCG
GCCGCTTTCGCACTCAAGCTCAATAAGAAGGTAATCGGCTTCAGGACGCT
GCCCTCCCTCAGCCACGACAGCAGCAGCAGCCTCCGCAATGCCTCTTCTT
TCCGTGGGAAAAGTCACAACTTGCCCGTTCAGCTCTCCTCCTACCTGGAG
GGAGGGCAGGAGGAAGAGAAGGAGGGAGAGGAGGGGGAGAGGATGCAGGG
CGGGCACCCGTCATCGTCGACCTGTCCGCCGGCGCCGCTGTTGGGGAGCA
TCACGCCCGCCAGCGAGTTCCCGACAGCCTCTGTCTGGAGCGTCCGTCTG
TCCAACGCCTCCTACGACGCGTGCAAGGACCTGGCGGCGGCCGCAGACGC
CGAAAGTGGACCCGTGGGATGCACGAGAAACATCATGAGTGCGAATATGA
AGGTATGGCGTTAACGGGTGCTTAATTTTCGTTCCTGTTTGCCCTCCGTC
CTTCCCCCCCTCCTTCTTTGCTTTACCAGCGTGCCCTGGTGATCGGGACG
TGAACAATCCTGTCTCTCACCGTGGAATATGAAGAGACTTTCTCTTTCAT
GAGGATGGAGACAGAACCCTCTCTTCCTCGTGTCGACTCCACGGGAAACA
AAAGCGAAACTCGCCTCCCTTCCTTTCTTGACCTCTCAATCGCCCATCCT
TCCCTCCCTCCTTCCCTCCCTCCTTCTTTTTCTCCCTCCAGGCAAATGCC
GATTGGTCTCTGACCATCCACTTTCCTTCCCTTCTCGAAGACCCATTCGC
TCACGACCGGAAGATGCGCCTGCTGCAAGACGTCATGGACGAGGGAGGGG
CCGAAGCAGCAGCCGCCTCAAGACAGGCCTACCAGACGCTGCTTCAGACA
CCCAAGACCGACCGCAGCCATTTCCAGGAGCAGCAGCTGCAGCTCAAGCG
CGGCCTCTCTCTCACCTTACCCCTACCCTCCTGGGGCAGCAAGAGTCCGG
ATTCCGGCGTCGCATCCATCAACACGGCGGCTCTTGG back to topprotein sequence of jgi.p|Nanoce1779_2|613322 >mRNA_10725-protein ID=mRNA_10725-protein|Name=jgi.p|Nanoce1779_2|613322|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MAQGSEAKSRKRKRKRNLRLRTIKAQREELPRVAHAWAWVEELDELQCEM
KAGRVFSGFSEGEIAFPPSFRWRRGAVAGDFTDRERLAASYVLQKKGDGQ
RVPSYTDRILFHSLADVRTSLSLLAYEMCDAVTGSDHRPVSAAFALKLNK
KVIGFRTLPSLSHDSSSSLRNASSFRGKSHNLPVQLSSYLEGGQEEEKEG
EEGERMQGGHPSSSTCPPAPLLGSITPASEFPTASVWSVRLSNASYDACK
DLAAAADAESGPVGCTRNIMSANMKVWR* back to topmRNA from alignment at scaffold_73:12..2645- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10725 ID=mRNA_10725|Name=jgi.p|Nanoce1779_2|613322|organism=Nannochloropsis oceanica|type=mRNA|length=2634bp|location=Sequence derived from alignment at scaffold_73:12..2645- (Nannochloropsis oceanica)
AACAACCGCCACGGCAGCTGGGGCGCCGGTCTCATTCTTATTCCTCAAGC
GGCAAGTCATCATCCTCTGGCTCGGGGGGCAACGACGTCTTCGTGAGCGG
CTCTTACAGCAGCGACAGCGGGCACACGGTGAGGGGGGGGGGGCGAGAGA
GGGAAAAAGTGACAAGGAACAAAACTGACCCACGTGCGATTGCTTCCTTT
TCCTTGTTTGTGCGGTCATTACAGTCAGGCTGTGGGAGTGCGACAAGTGT
CGTCATCGAGGCCCCTCCTACCACCACCACTGCTCCTTCCCTCCCTCTCC
CACGGGGACATTCGAGTGAGCTGATGGCGCAGGGCAGCGAAGCAAAGAGT
AGAAAGAGGAAGCGCAAGCGGAACCTAAGGCTGAGGACTATCAAGGCTCA
GGTATGAAGGGATGAAGAGGTGGGAGAGAGGGAAAGAGGGAGGTTGACAA
CGATCATTTTGACACGTGCACCACTCATAGCCTCACTCTTCCCTCCCTCT
TCGCGCTCTCCCCCTTTCTCTCCTTTTCGTCTCAGCGGGAGGAATTACCA
CGGGTGGCACATGCTTGGGCTTGGGTCGAAGAGCTAGACGAGCTACAGTG
CGAGATGAAGGTGAGGAGGGGGGTGAATGGAAGAAGAGAAGGAGGGAGGG
AGGGCGTGCGTGCTCCTTTCCTACTCTGTCGTCACACAGACGCTCACATG
AATGCCTCTCTTGCTCCCCTGTTCCCTCCCTTCCTCCCTTTCTCTTGTTC
CTATCCAGGCGGGCCGAGTTTTTTCGGGTTTCTCTGAGGGGGAGATTGCC
TTTCCTCCCTCCTTCCGCTGGCGCCGTGGGGCCGTGGCGGGGGACTTTAC
GGACAGGGAAAGGCTGGCCGCGAGCTACGTGCTTCAGAAGAAGGGAGATG
GACAGGTAGTAAGGGAGCGAGGGAAGGCAGAAGGAATGTGATGGATTTAG
GTGGGGACTTACAAAGTTATTCCTCCCTCCCACCCTCCCTCCCTCCCTCT
CCCGCCCTCCCAGCGCGTACCATCGTACACGGATCGGATTCTCTTTCACT
CTCTGGCAGACGTCCGCACCTCCCTCTCACTCCTGGCCTACGAGATGTGC
GACGCCGTGACGGGTTCCGACCACCGCCCTGTCTCGGCCGCTTTCGCACT
CAAGCTCAATAAGAAGGTGAGCGAGGGAAAGGAGGGAGGGAAGGAGGGAG
GAGGGGAAAAGGAAGGGAGCACTGGGAATAATACAACGATCACTTTTCCT
TTCGCCACACCCTTACTCTTCTTCTTTCCCCTCCCCTCTTCTCCCTTTCC
TCCATCCCTACCTCAGGTAATCGGCTTCAGGACGCTGCCCTCCCTCAGCC
ACGACAGCAGCAGCAGCCTCCGCAATGCCTCTTCTTTCCGTGGGAAAAGT
CACAACTTGCCCGTTCAGCTCTCCTCCTACCTGGAGGGAGGGCAGGAGGA
AGAGAAGGAGGGAGAGGAGGGGGAGAGGATGCAGGGCGGGCACCCGTCAT
CGTCGACCTGTCCGCCGGCGCCGCTGTTGGGGAGCATCACGCCCGCCAGC
GAGGTACGATGGAAAGAGAAACGAAAGAGATTTAGAGAAGACGACAAACG
ATGGGAAGAGGCCTGGAATATGAAGTAGGAGAAAAGGAAAAAGAAGAATA
GGAGGACTAGTAGACGGGCGTTCCTCAAGCCTCACGCTCACCCCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCCTCAGTTCCCGACAGCCT
CTGTCTGGAGCGTCCGTCTGTCCAACGCCTCCTACGACGCGTGCAAGGAC
CTGGCGGCGGCCGCAGACGCCGAAAGTGGACCCGTGGGATGCACGAGAAA
CATCATGAGTGCGAATATGAAGGTATGGCGTTAACGGGTGCTTAATTTTC
GTTCCTGTTTGCCCTCCGTCCTTCCCCCCCTCCTTCTTTGCTTTACCAGC
GTGCCCTGGTGATCGGGACGTGAACAATCCTGTCTCTCACCGTGGAATAT
GAAGAGACTTTCTCTTTCATGAGGATGGAGACAGAACCCTCTCTTCCTCG
TGTCGACTCCACGGGAAACAAAAGCGAAACTCGCCTCCCTTCCTTTCTTG
ACCTCTCAATCGCCCATCCTTCCCTCCCTCCTTCCCTCCCTCCTTCTTTT
TCTCCCTCCAGGCAAATGCCGATTGGTCTCTGACCATCCACTTTCCTTCC
CTTCTCGAAGACCCATTCGCTCACGACCGGAAGATGCGCCTGCTGCAAGA
CGTCATGGACGAGGGAGGGGCCGAAGCAGCAGCCGCCTCAAGACAGGCCT
ACCAGACGCTGCTTCAGACACCCAAGGTAAGGAGTGAGGGAGGAAGGGAT
CGAGGGAGGGATCGAGGGAGGGGAATAAAGGGAAGAATAAAGGGCGTTTT
GGGGTTGGTTTGTGGATGTGGTGGACTCATCGCCATTTCTCCTCTCCTCC
CTTTCTTCCTCGCTCCCCCGCTCCTTCTCCTCCCTTCCTTCCTCTCCACA
CAGACCGACCGCAGCCATTTCCAGGAGCAGCAGCTGCAGCTCAAGCGCGG
CCTCTCTCTCACCTTACCCCTACCCTCCTGGGGCAGCAAGAGTCCGGATT
CCGGCGTCGCATCCATCAACACGGCGGCTCTTGG back to topCoding sequence (CDS) from alignment at scaffold_73:12..2645- >mRNA_10725 ID=mRNA_10725|Name=jgi.p|Nanoce1779_2|613322|organism=Nannochloropsis oceanica|type=CDS|length=5022bp|location=Sequence derived from alignment at scaffold_73:12..2645- (Nannochloropsis oceanica)
TTCCCGACAGCCTCTGTCTGGAGCGTCCGTCTGTCCAACGCCTCCTACGA
CGCGTGCAAGGACCTGGCGGCGGCCGCAGACGCCGAAAGTGGACCCGTGG
GATGCACGAGAAACATCATGAGTGCGAATATGAAGGTATGGCGTTAAGTA
ATCGGCTTCAGGACGCTGCCCTCCCTCAGCCACGACAGCAGCAGCAGCCT
CCGCAATGCCTCTTCTTTCCGTGGGAAAAGTCACAACTTGCCCGTTCAGC
TCTCCTCCTACCTGGAGGGAGGGCAGGAGGAAGAGAAGGAGGGAGAGGAG
GGGGAGAGGATGCAGGGCGGGCACCCGTCATCGTCGACCTGTCCGCCGGC
GCCGCTGTTGGGGAGCATCACGCCCGCCAGCGAGCGCGTACCATCGTACA
CGGATCGGATTCTCTTTCACTCTCTGGCAGACGTCCGCACCTCCCTCTCA
CTCCTGGCCTACGAGATGTGCGACGCCGTGACGGGTTCCGACCACCGCCC
TGTCTCGGCCGCTTTCGCACTCAAGCTCAATAAGAAGGCGGGCCGAGTTT
TTTCGGGTTTCTCTGAGGGGGAGATTGCCTTTCCTCCCTCCTTCCGCTGG
CGCCGTGGGGCCGTGGCGGGGGACTTTACGGACAGGGAAAGGCTGGCCGC
GAGCTACGTGCTTCAGAAGAAGGGAGATGGACAGCGGGAGGAATTACCAC
GGGTGGCACATGCTTGGGCTTGGGTCGAAGAGCTAGACGAGCTACAGTGC
GAGATGAAGATGGCGCAGGGCAGCGAAGCAAAGAGTAGAAAGAGGAAGCG
CAAGCGGAACCTAAGGCTGAGGACTATCAAGGCTCAGTTCCCGACAGCCT
CTGTCTGGAGCGTCCGTCTGTCCAACGCCTCCTACGACGCGTGCAAGGAC
CTGGCGGCGGCCGCAGACGCCGAAAGTGGACCCGTGGGATGCACGAGAAA
CATCATGAGTGCGAATATGAAGGTATGGCGTTAAGTAATCGGCTTCAGGA
CGCTGCCCTCCCTCAGCCACGACAGCAGCAGCAGCCTCCGCAATGCCTCT
TCTTTCCGTGGGAAAAGTCACAACTTGCCCGTTCAGCTCTCCTCCTACCT
GGAGGGAGGGCAGGAGGAAGAGAAGGAGGGAGAGGAGGGGGAGAGGATGC
AGGGCGGGCACCCGTCATCGTCGACCTGTCCGCCGGCGCCGCTGTTGGGG
AGCATCACGCCCGCCAGCGAGCGCGTACCATCGTACACGGATCGGATTCT
CTTTCACTCTCTGGCAGACGTCCGCACCTCCCTCTCACTCCTGGCCTACG
AGATGTGCGACGCCGTGACGGGTTCCGACCACCGCCCTGTCTCGGCCGCT
TTCGCACTCAAGCTCAATAAGAAGGCGGGCCGAGTTTTTTCGGGTTTCTC
TGAGGGGGAGATTGCCTTTCCTCCCTCCTTCCGCTGGCGCCGTGGGGCCG
TGGCGGGGGACTTTACGGACAGGGAAAGGCTGGCCGCGAGCTACGTGCTT
CAGAAGAAGGGAGATGGACAGCGGGAGGAATTACCACGGGTGGCACATGC
TTGGGCTTGGGTCGAAGAGCTAGACGAGCTACAGTGCGAGATGAAGATGG
CGCAGGGCAGCGAAGCAAAGAGTAGAAAGAGGAAGCGCAAGCGGAACCTA
AGGCTGAGGACTATCAAGGCTCAGTTCCCGACAGCCTCTGTCTGGAGCGT
CCGTCTGTCCAACGCCTCCTACGACGCGTGCAAGGACCTGGCGGCGGCCG
CAGACGCCGAAAGTGGACCCGTGGGATGCACGAGAAACATCATGAGTGCG
AATATGAAGGTATGGCGTTAAGTAATCGGCTTCAGGACGCTGCCCTCCCT
CAGCCACGACAGCAGCAGCAGCCTCCGCAATGCCTCTTCTTTCCGTGGGA
AAAGTCACAACTTGCCCGTTCAGCTCTCCTCCTACCTGGAGGGAGGGCAG
GAGGAAGAGAAGGAGGGAGAGGAGGGGGAGAGGATGCAGGGCGGGCACCC
GTCATCGTCGACCTGTCCGCCGGCGCCGCTGTTGGGGAGCATCACGCCCG
CCAGCGAGCGCGTACCATCGTACACGGATCGGATTCTCTTTCACTCTCTG
GCAGACGTCCGCACCTCCCTCTCACTCCTGGCCTACGAGATGTGCGACGC
CGTGACGGGTTCCGACCACCGCCCTGTCTCGGCCGCTTTCGCACTCAAGC
TCAATAAGAAGGCGGGCCGAGTTTTTTCGGGTTTCTCTGAGGGGGAGATT
GCCTTTCCTCCCTCCTTCCGCTGGCGCCGTGGGGCCGTGGCGGGGGACTT
TACGGACAGGGAAAGGCTGGCCGCGAGCTACGTGCTTCAGAAGAAGGGAG
ATGGACAGCGGGAGGAATTACCACGGGTGGCACATGCTTGGGCTTGGGTC
GAAGAGCTAGACGAGCTACAGTGCGAGATGAAGATGGCGCAGGGCAGCGA
AGCAAAGAGTAGAAAGAGGAAGCGCAAGCGGAACCTAAGGCTGAGGACTA
TCAAGGCTCAGTTCCCGACAGCCTCTGTCTGGAGCGTCCGTCTGTCCAAC
GCCTCCTACGACGCGTGCAAGGACCTGGCGGCGGCCGCAGACGCCGAAAG
TGGACCCGTGGGATGCACGAGAAACATCATGAGTGCGAATATGAAGGTAT
GGCGTTAAGTAATCGGCTTCAGGACGCTGCCCTCCCTCAGCCACGACAGC
AGCAGCAGCCTCCGCAATGCCTCTTCTTTCCGTGGGAAAAGTCACAACTT
GCCCGTTCAGCTCTCCTCCTACCTGGAGGGAGGGCAGGAGGAAGAGAAGG
AGGGAGAGGAGGGGGAGAGGATGCAGGGCGGGCACCCGTCATCGTCGACC
TGTCCGCCGGCGCCGCTGTTGGGGAGCATCACGCCCGCCAGCGAGCGCGT
ACCATCGTACACGGATCGGATTCTCTTTCACTCTCTGGCAGACGTCCGCA
CCTCCCTCTCACTCCTGGCCTACGAGATGTGCGACGCCGTGACGGGTTCC
GACCACCGCCCTGTCTCGGCCGCTTTCGCACTCAAGCTCAATAAGAAGGC
GGGCCGAGTTTTTTCGGGTTTCTCTGAGGGGGAGATTGCCTTTCCTCCCT
CCTTCCGCTGGCGCCGTGGGGCCGTGGCGGGGGACTTTACGGACAGGGAA
AGGCTGGCCGCGAGCTACGTGCTTCAGAAGAAGGGAGATGGACAGCGGGA
GGAATTACCACGGGTGGCACATGCTTGGGCTTGGGTCGAAGAGCTAGACG
AGCTACAGTGCGAGATGAAGATGGCGCAGGGCAGCGAAGCAAAGAGTAGA
AAGAGGAAGCGCAAGCGGAACCTAAGGCTGAGGACTATCAAGGCTCAGTT
CCCGACAGCCTCTGTCTGGAGCGTCCGTCTGTCCAACGCCTCCTACGACG
CGTGCAAGGACCTGGCGGCGGCCGCAGACGCCGAAAGTGGACCCGTGGGA
TGCACGAGAAACATCATGAGTGCGAATATGAAGGTATGGCGTTAAGTAAT
CGGCTTCAGGACGCTGCCCTCCCTCAGCCACGACAGCAGCAGCAGCCTCC
GCAATGCCTCTTCTTTCCGTGGGAAAAGTCACAACTTGCCCGTTCAGCTC
TCCTCCTACCTGGAGGGAGGGCAGGAGGAAGAGAAGGAGGGAGAGGAGGG
GGAGAGGATGCAGGGCGGGCACCCGTCATCGTCGACCTGTCCGCCGGCGC
CGCTGTTGGGGAGCATCACGCCCGCCAGCGAGCGCGTACCATCGTACACG
GATCGGATTCTCTTTCACTCTCTGGCAGACGTCCGCACCTCCCTCTCACT
CCTGGCCTACGAGATGTGCGACGCCGTGACGGGTTCCGACCACCGCCCTG
TCTCGGCCGCTTTCGCACTCAAGCTCAATAAGAAGGCGGGCCGAGTTTTT
TCGGGTTTCTCTGAGGGGGAGATTGCCTTTCCTCCCTCCTTCCGCTGGCG
CCGTGGGGCCGTGGCGGGGGACTTTACGGACAGGGAAAGGCTGGCCGCGA
GCTACGTGCTTCAGAAGAAGGGAGATGGACAGCGGGAGGAATTACCACGG
GTGGCACATGCTTGGGCTTGGGTCGAAGAGCTAGACGAGCTACAGTGCGA
GATGAAGATGGCGCAGGGCAGCGAAGCAAAGAGTAGAAAGAGGAAGCGCA
AGCGGAACCTAAGGCTGAGGACTATCAAGGCTCAGTTCCCGACAGCCTCT
GTCTGGAGCGTCCGTCTGTCCAACGCCTCCTACGACGCGTGCAAGGACCT
GGCGGCGGCCGCAGACGCCGAAAGTGGACCCGTGGGATGCACGAGAAACA
TCATGAGTGCGAATATGAAGGTATGGCGTTAAGTAATCGGCTTCAGGACG
CTGCCCTCCCTCAGCCACGACAGCAGCAGCAGCCTCCGCAATGCCTCTTC
TTTCCGTGGGAAAAGTCACAACTTGCCCGTTCAGCTCTCCTCCTACCTGG
AGGGAGGGCAGGAGGAAGAGAAGGAGGGAGAGGAGGGGGAGAGGATGCAG
GGCGGGCACCCGTCATCGTCGACCTGTCCGCCGGCGCCGCTGTTGGGGAG
CATCACGCCCGCCAGCGAGCGCGTACCATCGTACACGGATCGGATTCTCT
TTCACTCTCTGGCAGACGTCCGCACCTCCCTCTCACTCCTGGCCTACGAG
ATGTGCGACGCCGTGACGGGTTCCGACCACCGCCCTGTCTCGGCCGCTTT
CGCACTCAAGCTCAATAAGAAGGCGGGCCGAGTTTTTTCGGGTTTCTCTG
AGGGGGAGATTGCCTTTCCTCCCTCCTTCCGCTGGCGCCGTGGGGCCGTG
GCGGGGGACTTTACGGACAGGGAAAGGCTGGCCGCGAGCTACGTGCTTCA
GAAGAAGGGAGATGGACAGCGGGAGGAATTACCACGGGTGGCACATGCTT
GGGCTTGGGTCGAAGAGCTAGACGAGCTACAGTGCGAGATGAAGATGGCG
CAGGGCAGCGAAGCAAAGAGTAGAAAGAGGAAGCGCAAGCGGAACCTAAG
GCTGAGGACTATCAAGGCTCAG back to top
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