jgi.p|Nanoce1779_2|355554, mRNA_10722 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|355554
Unique NamemRNA_10722
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1328
Alignment locationscaffold_58:91583..93088 -

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Properties
Property NameValue
TranscriptId355640
TrackFilteredModels2
ProteinId355554
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:91583..93088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|355554gene_10722Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|355554mRNA_10722-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10722CDS_10722Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10722 ID=mRNA_10722|Name=jgi.p|Nanoce1779_2|355554|organism=Nannochloropsis oceanica|type=mRNA|length=1328bp
ACTTCTATCCAGGAAAGATGGAGAACCCTTGAACAGAGCATGTCACAGTG
CGTGACTGCCCCGTTGACCCCCCTCTTGCCTATGCTTGCTCTCTTCTTCT
TTGTTTTGGGAGCGCCTGCTGAGCCAAGAGATACAGAACCAGGCCAAGAC
GGGAATCTTCTTTCTCTTGCTCGCGCACCCCCTCTCTGAGCCGAGACGCT
GCCTCCTCAATCCTATGAGGTTCCCTCTATTCATCTCACTCAGCCTCGCT
CCTCTTACCCCCCTGCCTCTCTCCAACAGCCTGGTTCCCCATGATGAAGA
CAGGAGACACACCCGTCTCCCCTCCGCCTTCTCCTTCCCTCCCTTCTCCC
CTCACCGTGGGCCTCCTCGTCTTCCCCGGCCTCACGGCCCTGGACGCCCT
TGGCCCATACGAGGTCTTCGCCCGCGCCCCCAATACCCGCGTCCTTCTCA
TCTCCTCCTCCTCTTCTTCCTCTTCTTCCACCCTCCAAGCGTCCCCCATT
CTGAGCGACTCGGGTATCTCTCTTCTTCCCCACATCCACTCCCTCTCCCT
CTGCCCACCTTTGGACGTGCTTCTCATTCCTGGAGGTCCGGGCCAAGTGG
CGCTGATGGAAAACCCGGATGTTCTTGCCTGGATTGAGCGCCAGTCACGC
TCCTCCTGTCGGTACATCACCAGCGTCTGCACCGGCGCCTTGGTTTTAGC
ATCTGTGGGAGGAGGAATGGGGGGAGGGGGGGGAAGCGGGCTGCTGCTAC
AGAGGAAGGGGGTGAGGGCGACGACGCACTGGATGTTTATGGAGCAGCTA
AGGGCCATGGGGGTGGAGGCTGTGGAGGGCCAGAGGGTCGTGCGAGCCGT
CACCACAGTGCCGTGCTGGGATGAAAAGGAGGAGGGAGAAGAGGTAGAAA
ATAAGAGAGGCGGAGAGAAAAGAGGAGGAGAGATGAAGGGTGGGAGGAAC
GAGAAAGAGGTCGTCTTGTACACGGGCGGGGGCGTGACGGCGGGGATCGA
CTTCGCCTTCGCGGTGGTGAGAGACGTGTGGGGCGAGGATGAAGCCCAAG
CCATTCAACTGAAGATGGAGTACTTTCCCGCCCTTCCTCTTGGCCTGCTC
ACGTCGCGGCCCGAGGTTGTGAGGAAAAGAAGGGGGAAGGAAGCGAAGGT
GCTGGAGCGGGTGGAGATGGAGGGGAAGGAATTGAAGGAACGGAGGGAAA
AGGTGTGTGCAAGGGTCAAGACAAGACTCCAAGGGAAGGAATGACGAAGT
GGAGGAGGAAGGGAAGAAGGAGGCTAGAGAGGAAGCCACAGGGAAAGGAA
AGCACGCGTGTATTTTATATATTTAACG
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protein sequence of jgi.p|Nanoce1779_2|355554

>mRNA_10722-protein ID=mRNA_10722-protein|Name=jgi.p|Nanoce1779_2|355554|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MMKTGDTPVSPPPSPSLPSPLTVGLLVFPGLTALDALGPYEVFARAPNTR
VLLISSSSSSSSSTLQASPILSDSGISLLPHIHSLSLCPPLDVLLIPGGP
GQVALMENPDVLAWIERQSRSSCRYITSVCTGALVLASVGGGMGGGGGSG
LLLQRKGVRATTHWMFMEQLRAMGVEAVEGQRVVRAVTTVPCWDEKEEGE
EVENKRGGEKRGGEMKGGRNEKEVVLYTGGGVTAGIDFAFAVVRDVWGED
EAQAIQLKMEYFPALPLGLLTSRPEVVRKRRGKEAKVLERVEMEGKELKE
RREKVCARVKTRLQGKE*
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mRNA from alignment at scaffold_58:91583..93088-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10722 ID=mRNA_10722|Name=jgi.p|Nanoce1779_2|355554|organism=Nannochloropsis oceanica|type=mRNA|length=1506bp|location=Sequence derived from alignment at scaffold_58:91583..93088- (Nannochloropsis oceanica)
ACTTCTATCCAGGAAAGATGGAGAACCCTTGAACAGAGCATGTCACAGTG
CGTGACTGCCCCGTTGACCCCCCTCTTGCCTATGCTTGCTCTCTTCTTCT
TTGTTTTGGGAGCGCCTGCTGAGCCAAGAGATACAGAACCAGGCCAAGAC
GGGAATCTTCTTTCTCTTGCTCGCGCACCCCCTCTCTGAGCCGAGACGCT
GCCTCCTCAATCCTATGAGGTTCCCTCTATTCATCTCACTCAGCCTCGCT
CCTCTTACCCCCCTGCCTCTCTCCAACAGCCTGGTTCCCCATGATGAAGA
CAGGAGACACACCCGTCTCCCCTCCGCCTTCTCCTTCCCTCCCTTCTCCC
CTCACCGTGGGCCTCCTCGTCTTCCCCGGCCTCACGGCCCTGGACGCCCT
TGGCCCATACGAGGTCTTCGCCCGCGCCCCCAATACCCGCGTCCTTCTCA
TCTCCTCCTCCTCTTCTTCCTCTTCTTCCACCCTCCAAGCGTCCCCCATT
CTGAGCGACTCGGGTATCTCTCTTCTTCCCCACATCCACTCCCTCTCCCT
CTGCCCACCTTTGGACGTGCTTCTCATTCCTGGAGGTCCGGGCCAAGTGG
CGCTGATGGAAAACCCGGATGTGAGTGAGGGAGGGAGGAAGGGAAGGGGG
AGGAGGAGGAGAAGGGTTGCAATATTTTCATGTTCCTTTCCTGCTTCTTC
TACATCATCGCGTCCAGTCCTCGTTCGTTGCTACGAGAAGTGCTCCTTCC
GTCCCTCTGCCTCGCGCCCTCATTCCCCTCTCTCCCCCCCTCCTTCAGGT
TCTTGCCTGGATTGAGCGCCAGTCACGCTCCTCCTGTCGGTACATCACCA
GCGTCTGCACCGGCGCCTTGGTTTTAGCATCTGTGGGAGGAGGAATGGGG
GGAGGGGGGGGAAGCGGGCTGCTGCTACAGAGGAAGGGGGTGAGGGCGAC
GACGCACTGGATGTTTATGGAGCAGCTAAGGGCCATGGGGGTGGAGGCTG
TGGAGGGCCAGAGGGTCGTGCGAGCCGTCACCACAGTGCCGTGCTGGGAT
GAAAAGGAGGAGGGAGAAGAGGTAGAAAATAAGAGAGGCGGAGAGAAAAG
AGGAGGAGAGATGAAGGGTGGGAGGAACGAGAAAGAGGTCGTCTTGTACA
CGGGCGGGGGCGTGACGGCGGGGATCGACTTCGCCTTCGCGGTGGTGAGA
GACGTGTGGGGCGAGGATGAAGCCCAAGCCATTCAACTGAAGATGGAGTA
CTTTCCCGCCCTTCCTCTTGGCCTGCTCACGTCGCGGCCCGAGGTTGTGA
GGAAAAGAAGGGGGAAGGAAGCGAAGGTGCTGGAGCGGGTGGAGATGGAG
GGGAAGGAATTGAAGGAACGGAGGGAAAAGGTGTGTGCAAGGGTCAAGAC
AAGACTCCAAGGGAAGGAATGACGAAGTGGAGGAGGAAGGGAAGAAGGAG
GCTAGAGAGGAAGCCACAGGGAAAGGAAAGCACGCGTGTATTTTATATAT
TTAACG
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Coding sequence (CDS) from alignment at scaffold_58:91583..93088-

>mRNA_10722 ID=mRNA_10722|Name=jgi.p|Nanoce1779_2|355554|organism=Nannochloropsis oceanica|type=CDS|length=1908bp|location=Sequence derived from alignment at scaffold_58:91583..93088- (Nannochloropsis oceanica)
GTTCTTGCCTGGATTGAGCGCCAGTCACGCTCCTCCTGTCGGTACATCAC
CAGCGTCTGCACCGGCGCCTTGGTTTTAGCATCTGTGGGAGGAGGAATGG
GGGGAGGGGGGGGAAGCGGGCTGCTGCTACAGAGGAAGGGGGTGAGGGCG
ACGACGCACTGGATGTTTATGGAGCAGCTAAGGGCCATGGGGGTGGAGGC
TGTGGAGGGCCAGAGGGTCGTGCGAGCCGTCACCACAGTGCCGTGCTGGG
ATGAAAAGGAGGAGGGAGAAGAGGTAGAAAATAAGAGAGGCGGAGAGAAA
AGAGGAGGAGAGATGAAGGGTGGGAGGAACGAGAAAGAGGTCGTCTTGTA
CACGGGCGGGGGCGTGACGGCGGGGATCGACTTCGCCTTCGCGGTGGTGA
GAGACGTGTGGGGCGAGGATGAAGCCCAAGCCATTCAACTGAAGATGGAG
TACTTTCCCGCCCTTCCTCTTGGCCTGCTCACGTCGCGGCCCGAGGTTGT
GAGGAAAAGAAGGGGGAAGGAAGCGAAGGTGCTGGAGCGGGTGGAGATGG
AGGGGAAGGAATTGAAGGAACGGAGGGAAAAGGTGTGTGCAAGGGTCAAG
ACAAGACTCCAAGGGAAGGAATGAATGATGAAGACAGGAGACACACCCGT
CTCCCCTCCGCCTTCTCCTTCCCTCCCTTCTCCCCTCACCGTGGGCCTCC
TCGTCTTCCCCGGCCTCACGGCCCTGGACGCCCTTGGCCCATACGAGGTC
TTCGCCCGCGCCCCCAATACCCGCGTCCTTCTCATCTCCTCCTCCTCTTC
TTCCTCTTCTTCCACCCTCCAAGCGTCCCCCATTCTGAGCGACTCGGGTA
TCTCTCTTCTTCCCCACATCCACTCCCTCTCCCTCTGCCCACCTTTGGAC
GTGCTTCTCATTCCTGGAGGTCCGGGCCAAGTGGCGCTGATGGAAAACCC
GGATGTTCTTGCCTGGATTGAGCGCCAGTCACGCTCCTCCTGTCGGTACA
TCACCAGCGTCTGCACCGGCGCCTTGGTTTTAGCATCTGTGGGAGGAGGA
ATGGGGGGAGGGGGGGGAAGCGGGCTGCTGCTACAGAGGAAGGGGGTGAG
GGCGACGACGCACTGGATGTTTATGGAGCAGCTAAGGGCCATGGGGGTGG
AGGCTGTGGAGGGCCAGAGGGTCGTGCGAGCCGTCACCACAGTGCCGTGC
TGGGATGAAAAGGAGGAGGGAGAAGAGGTAGAAAATAAGAGAGGCGGAGA
GAAAAGAGGAGGAGAGATGAAGGGTGGGAGGAACGAGAAAGAGGTCGTCT
TGTACACGGGCGGGGGCGTGACGGCGGGGATCGACTTCGCCTTCGCGGTG
GTGAGAGACGTGTGGGGCGAGGATGAAGCCCAAGCCATTCAACTGAAGAT
GGAGTACTTTCCCGCCCTTCCTCTTGGCCTGCTCACGTCGCGGCCCGAGG
TTGTGAGGAAAAGAAGGGGGAAGGAAGCGAAGGTGCTGGAGCGGGTGGAG
ATGGAGGGGAAGGAATTGAAGGAACGGAGGGAAAAGGTGTGTGCAAGGGT
CAAGACAAGACTCCAAGGGAAGGAATGAATGATGAAGACAGGAGACACAC
CCGTCTCCCCTCCGCCTTCTCCTTCCCTCCCTTCTCCCCTCACCGTGGGC
CTCCTCGTCTTCCCCGGCCTCACGGCCCTGGACGCCCTTGGCCCATACGA
GGTCTTCGCCCGCGCCCCCAATACCCGCGTCCTTCTCATCTCCTCCTCCT
CTTCTTCCTCTTCTTCCACCCTCCAAGCGTCCCCCATTCTGAGCGACTCG
GGTATCTCTCTTCTTCCCCACATCCACTCCCTCTCCCTCTGCCCACCTTT
GGACGTGCTTCTCATTCCTGGAGGTCCGGGCCAAGTGGCGCTGATGGAAA
ACCCGGAT
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Synonyms
Publications