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Properties
| Property Name | Value |
|---|
| TranscriptId | 356002 |
| Track | FilteredModels2 |
| ProteinId | 355916 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:87665..89776 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10720 ID=mRNA_10720|Name=jgi.p|Nanoce1779_2|355916|organism=Nannochloropsis oceanica|type=mRNA|length=1659bp
GGCGGGGCAGGCGCCGAGTCCTCGGGCCATTCGACCGGAAGACATGCCTT
TCATGCCTTTCGTACCTTTTATGCCTACCGTGCCTGCCATGCCTATGATG
CCTTTCCGCCGAGTCGGGATTGTGGGTGCTGCAGGCACTGCTGCTTCCGC
TGATTAACATACTGTTACATCGCTGTGGCTTGTCTTTTATTGTGCCGGTG
CGGCTGCTGCTGTCGTTGTTGTTGATGTCGCTGGTGGTGGTGGTAGTGTT
ACACGCTCACACACCCATGGTGCCCCAACCACCACCACCACCGCGCTCCT
CTTCTTCGTCCTCCTCTTCCTCCTCGCCCACCACCACCACCAAGAACGAC
CCGCCTTCCTCTCCTCCAAACCATCCTCCCCCTCCTGCCCACCCACGCCC
CCCCCAGCCGTCCGACGGAGGGCGTAAAGGCGGTGGTGTCGCTTCCACTA
CTATCGCTCCTTCTGCCGCGGGTGGGGGTGCCACTGGAGGAGGGGCTCTG
AGCCCGGCATCGTGTCGGTTGTGCCTGGGTATGACCCTGATGACGAGCAA
GATGAGGAACGCCAGGCGACCACCCACGTGCTACGGCATCACACGGACGA
GCACTCGGCCGCATCCACCCCTTGACGAGCCCCGAGACGCCTACATCGAC
GAGGTTCTTCGCAGCGGTGGCCAGGCCCGGTGGACGTACCTGTGCGTGGG
GGCCAGCGAGACGCTGGCAGCAAAAGCAACCACCAAAACCACCTCTGCAA
GGGCAGAGCTAGGAGCAGGAGCAGGTGCAGGAGCAGGAGCTGCGGTAGCG
CCAGCACCAGGAGCCATTCCCTCCTGCCCTTCCTCGTCGACGGTGGGGGG
GGACGAGGGAGGGTGGGAGGCACCGGGGGCGGACCTGGCCGCTCTGCCCG
TGTGCCAGGGCCTGCTGGTCTTCATGGATGGGGAGGAGTATGGAGAGGAG
GCCGGGATGCAGCAGGGCGCAAGACGACGACACCGGCCGGGCTTGGAGGG
CAGTCTCGGTGGCCGGTCCACAGACACAGACATCGTGGGGGGGGCGATCG
GGAACCGCCGTCGCACTTCCTCCTCGTCTTCCCCTTCCTCCACCCCTCAT
TCGGCCTTCCCTCTGGAGCCTCCCTCGTCCAGCGCCCTGGAGGAGGCGGC
TCGACGGGTGGGTTCTTTCTGGTCGAATGCCTCAGAAGACTTCGCCAACA
AGTACGTCCGGTCTAGCAGGAAACTGGTGGGGGCCATGGAAAGGCAGGCC
CAGCAGGTCCTGGTCACGGGGCGCAGGTTGGTGGGGGGGAAGTGGGGAGG
GAAGGACGGCAAAGGGGAGGATGGGGGGGGGGGGAAGGAGGGACGAAGGG
AGGGGCGGGATGAGGGCCATGCGAGCCAGAACAGCCCCCGGCGTTCCTGC
CCCCGTCCAGGTCGCCAGGGGAGAGGGTGTATAGAAGGGGCACGTGTATG
TAGATGTGAGAGGGGCGAACAGAGCGGGCGCGCTAGCAAGGAAGGGGAGG
GGACAAGGAGAACAGAATGAGGGAGAGAGGGGAAGAGAGAGAGGCCGCAT
CGAGGCCCATGCGCGTATATTTCCAAAAGTCCGCTGTGCGAGGAAAGAGT
AGAAAAAGACGATGAAGAAGAGATCGAAGAAGGAAAAAAAGAAGGAGAAC
GAAACGCAC back to topprotein sequence of jgi.p|Nanoce1779_2|355916 >mRNA_10720-protein ID=mRNA_10720-protein|Name=jgi.p|Nanoce1779_2|355916|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MSLVVVVVLHAHTPMVPQPPPPPRSSSSSSSSSSPTTTTKNDPPSSPPNH
PPPPAHPRPPQPSDGGRKGGGVASTTIAPSAAGGGATGGGALSPASCRLC
LGMTLMTSKMRNARRPPTCYGITRTSTRPHPPLDEPRDAYIDEVLRSGGQ
ARWTYLCVGASETLAAKATTKTTSARAELGAGAGAGAGAAVAPAPGAIPS
CPSSSTVGGDEGGWEAPGADLAALPVCQGLLVFMDGEEYGEEAGMQQGAR
RRHRPGLEGSLGGRSTDTDIVGGAIGNRRRTSSSSSPSSTPHSAFPLEPP
SSSALEEAARRVGSFWSNASEDFANKYVRSSRKLVGAMERQAQQVLVTGR
RLVGGKWGGKDGKGEDGGGGKEGRREGRDEGHASQNSPRRSCPRPGRQGR
GCIEGARVCRCERGEQSGRASKEGEGTRRTE* back to topmRNA from alignment at scaffold_58:87665..89776- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10720 ID=mRNA_10720|Name=jgi.p|Nanoce1779_2|355916|organism=Nannochloropsis oceanica|type=mRNA|length=2112bp|location=Sequence derived from alignment at scaffold_58:87665..89776- (Nannochloropsis oceanica)
GGCGGGGCAGGCGCCGAGTCCTCGGGCCATTCGACCGGAAGACATGCCTT
TCATGCCTTTCGTACCTTTTATGCCTACCGTGCCTGCCATGCCTATGATG
CCTTTCCGCCGAGTCGGGATTGTGGGTGCTGCAGGCACTGCTGCTTCCGC
TGATTAACATACTGTTACATCGCTGTGGCTTGTCTTTTATTGTGCCGGTG
CGGCTGCTGCTGTCGTTGTTGTTGATGTCGCTGGTGGTGGTGGTAGTGGT
AGTGATGATGAGGATTCTAGCATCGTCCACCGCCGCCCTTCGGCCTGGAC
TCCATCCAATAAAAGAGAGGCGGCCATCGATCCGGACATTGTCAATCCCT
CACTCTCTGGCCCCCCCTCCCCACCCTCCCTGCCCCTTTCTACACGAACA
GTTACACGCTCACACACCCATGGTGCCCCAACCACCACCACCACCGCGCT
CCTCTTCTTCGTCCTCCTCTTCCTCCTCGCCCACCACCACCACCAAGAAC
GACCCGCCTTCCTCTCCTCCAAACCATCCTCCCCCTCCTGCCCACCCACG
CCCCCCCCAGCCGTCCGACGGAGGGCGTAAAGGCGGTGGTGTCGCTTCCA
CTACTATCGCTCCTTCTGCCGCGGGTGGGGGTGCCACTGGAGGAGGGGCT
CTGAGCCCGGCATCGTGTCGGTTGTGCCTGGGTATGACCCTGATGACGAG
CAAGATGAGGAACGCCAGGCGACCACCCACGTGCTACGGCATCACACGGA
CGAGCACTCGGCCGCATCCACCCCTTGACGAGGTATCACGGCCATCTGCG
CTCCATCCGCCCCTCCCTCACTCCCTCCCTCCCTCTCTCCCTCTGATCGA
CTCAAAATAGCTCTTTGGCTTCCTCACACCCACCTCTTCCTTCCTCCCTT
CTCCTCCTTCCCCCCTTGGCAGCCCCGAGACGCCTACATCGACGAGGTTC
TTCGCAGCGGTGGCCAGGCCCGGTGGACGTACCTGTGCGTGGGGGCCAGC
GAGACGCTGGCAGCAAAAGCAACCACCAAAACCACCTCTGCAAGGGCAGA
GCTAGGAGCAGGAGCAGGTGCAGGAGCAGGAGCTGCGGTAGCGCCAGCAC
CAGGAGCCATTCCCTCCTGCCCTTCCTCGTCGACGGTGGGGGGGGACGAG
GGAGGGTGGGAGGCACCGGGGGCGGACCTGGCCGCTCTGCCCGTGTGCCA
GGGCCTGCTGGTCTTCATGGATGGGGAGGAGTATGGAGAGGAGGCCGGGA
TGCAGCAGGGCGCAAGACGACGACACCGGCCGGGCTTGGAGGGCAGTCTC
GGTGGCCGGTCCACAGACACAGACATCGTGGGGGGGGCGATCGGGAACCG
CCGTCGCACTTCCTCCTCGTCTTCCCCTTCCTCCACCCCTCATTCGGCCT
TCCCTCTGGAGCCTCCCTCGTCCAGCGCCCTGGAGGAGGCGGCTCGACGG
GTGGGTTCTTTCTGGTCGAATGCCTCAGAAGACTTCGCCAACAAGGTACG
GTGCGGAAGAAGGAAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGCGCCCTTCTTCCCTCTATTCCTTTCTTCCTATTTTTACCTGTTCTT
GTGTTTAGTTGCTGACATTTCTCTCCCTCCCTCCCTCCCGTCCTCCCTCT
CTCAGTACGTCCGGTCTAGCAGGAAACTGGTGGGGGCCATGGAAAGGCAG
GCCCAGCAGGTCCTGGTCACGGGGCGCAGGTTGGTGGGGGGGAAGTGGGG
AGGGAAGGACGGCAAAGGGGAGGATGGGGGGGGGGGGAAGGAGGGACGAA
GGGAGGGGCGGGATGAGGGCCATGCGAGCCAGAACAGCCCCCGGCGTTCC
TGCCCCCGTCCAGGTCGCCAGGGGAGAGGGTGTATAGAAGGGGCACGTGT
ATGTAGATGTGAGAGGGGCGAACAGAGCGGGCGCGCTAGCAAGGAAGGGG
AGGGGACAAGGAGAACAGAATGAGGGAGAGAGGGGAAGAGAGAGAGGCCG
CATCGAGGCCCATGCGCGTATATTTCCAAAAGTCCGCTGTGCGAGGAAAG
AGTAGAAAAAGACGATGAAGAAGAGATCGAAGAAGGAAAAAAAGAAGGAG
AACGAAACGCAC back to topCoding sequence (CDS) from alignment at scaffold_58:87665..89776- >mRNA_10720 ID=mRNA_10720|Name=jgi.p|Nanoce1779_2|355916|organism=Nannochloropsis oceanica|type=CDS|length=5184bp|location=Sequence derived from alignment at scaffold_58:87665..89776- (Nannochloropsis oceanica)
TACGTCCGGTCTAGCAGGAAACTGGTGGGGGCCATGGAAAGGCAGGCCCA
GCAGGTCCTGGTCACGGGGCGCAGGTTGGTGGGGGGGAAGTGGGGAGGGA
AGGACGGCAAAGGGGAGGATGGGGGGGGGGGGAAGGAGGGACGAAGGGAG
GGGCGGGATGAGGGCCATGCGAGCCAGAACAGCCCCCGGCGTTCCTGCCC
CCGTCCAGGTCGCCAGGGGAGAGGGTGTATAGAAGGGGCACGTGTATGTA
GATGTGAGAGGGGCGAACAGAGCGGGCGCGCTAGCAAGGAAGGGGAGGGG
ACAAGGAGAACAGAATGACCCCGAGACGCCTACATCGACGAGGTTCTTCG
CAGCGGTGGCCAGGCCCGGTGGACGTACCTGTGCGTGGGGGCCAGCGAGA
CGCTGGCAGCAAAAGCAACCACCAAAACCACCTCTGCAAGGGCAGAGCTA
GGAGCAGGAGCAGGTGCAGGAGCAGGAGCTGCGGTAGCGCCAGCACCAGG
AGCCATTCCCTCCTGCCCTTCCTCGTCGACGGTGGGGGGGGACGAGGGAG
GGTGGGAGGCACCGGGGGCGGACCTGGCCGCTCTGCCCGTGTGCCAGGGC
CTGCTGGTCTTCATGGATGGGGAGGAGTATGGAGAGGAGGCCGGGATGCA
GCAGGGCGCAAGACGACGACACCGGCCGGGCTTGGAGGGCAGTCTCGGTG
GCCGGTCCACAGACACAGACATCGTGGGGGGGGCGATCGGGAACCGCCGT
CGCACTTCCTCCTCGTCTTCCCCTTCCTCCACCCCTCATTCGGCCTTCCC
TCTGGAGCCTCCCTCGTCCAGCGCCCTGGAGGAGGCGGCTCGACGGGTGG
GTTCTTTCTGGTCGAATGCCTCAGAAGACTTCGCCAACAAGTTACACGCT
CACACACCCATGGTGCCCCAACCACCACCACCACCGCGCTCCTCTTCTTC
GTCCTCCTCTTCCTCCTCGCCCACCACCACCACCAAGAACGACCCGCCTT
CCTCTCCTCCAAACCATCCTCCCCCTCCTGCCCACCCACGCCCCCCCCAG
CCGTCCGACGGAGGGCGTAAAGGCGGTGGTGTCGCTTCCACTACTATCGC
TCCTTCTGCCGCGGGTGGGGGTGCCACTGGAGGAGGGGCTCTGAGCCCGG
CATCGTGTCGGTTGTGCCTGGGTATGACCCTGATGACGAGCAAGATGAGG
AACGCCAGGCGACCACCCACGTGCTACGGCATCACACGGACGAGCACTCG
GCCGCATCCACCCCTTGACGAGATGTCGCTGGTGGTGGTGGTAGTGTACG
TCCGGTCTAGCAGGAAACTGGTGGGGGCCATGGAAAGGCAGGCCCAGCAG
GTCCTGGTCACGGGGCGCAGGTTGGTGGGGGGGAAGTGGGGAGGGAAGGA
CGGCAAAGGGGAGGATGGGGGGGGGGGGAAGGAGGGACGAAGGGAGGGGC
GGGATGAGGGCCATGCGAGCCAGAACAGCCCCCGGCGTTCCTGCCCCCGT
CCAGGTCGCCAGGGGAGAGGGTGTATAGAAGGGGCACGTGTATGTAGATG
TGAGAGGGGCGAACAGAGCGGGCGCGCTAGCAAGGAAGGGGAGGGGACAA
GGAGAACAGAATGACCCCGAGACGCCTACATCGACGAGGTTCTTCGCAGC
GGTGGCCAGGCCCGGTGGACGTACCTGTGCGTGGGGGCCAGCGAGACGCT
GGCAGCAAAAGCAACCACCAAAACCACCTCTGCAAGGGCAGAGCTAGGAG
CAGGAGCAGGTGCAGGAGCAGGAGCTGCGGTAGCGCCAGCACCAGGAGCC
ATTCCCTCCTGCCCTTCCTCGTCGACGGTGGGGGGGGACGAGGGAGGGTG
GGAGGCACCGGGGGCGGACCTGGCCGCTCTGCCCGTGTGCCAGGGCCTGC
TGGTCTTCATGGATGGGGAGGAGTATGGAGAGGAGGCCGGGATGCAGCAG
GGCGCAAGACGACGACACCGGCCGGGCTTGGAGGGCAGTCTCGGTGGCCG
GTCCACAGACACAGACATCGTGGGGGGGGCGATCGGGAACCGCCGTCGCA
CTTCCTCCTCGTCTTCCCCTTCCTCCACCCCTCATTCGGCCTTCCCTCTG
GAGCCTCCCTCGTCCAGCGCCCTGGAGGAGGCGGCTCGACGGGTGGGTTC
TTTCTGGTCGAATGCCTCAGAAGACTTCGCCAACAAGTTACACGCTCACA
CACCCATGGTGCCCCAACCACCACCACCACCGCGCTCCTCTTCTTCGTCC
TCCTCTTCCTCCTCGCCCACCACCACCACCAAGAACGACCCGCCTTCCTC
TCCTCCAAACCATCCTCCCCCTCCTGCCCACCCACGCCCCCCCCAGCCGT
CCGACGGAGGGCGTAAAGGCGGTGGTGTCGCTTCCACTACTATCGCTCCT
TCTGCCGCGGGTGGGGGTGCCACTGGAGGAGGGGCTCTGAGCCCGGCATC
GTGTCGGTTGTGCCTGGGTATGACCCTGATGACGAGCAAGATGAGGAACG
CCAGGCGACCACCCACGTGCTACGGCATCACACGGACGAGCACTCGGCCG
CATCCACCCCTTGACGAGATGTCGCTGGTGGTGGTGGTAGTGTACGTCCG
GTCTAGCAGGAAACTGGTGGGGGCCATGGAAAGGCAGGCCCAGCAGGTCC
TGGTCACGGGGCGCAGGTTGGTGGGGGGGAAGTGGGGAGGGAAGGACGGC
AAAGGGGAGGATGGGGGGGGGGGGAAGGAGGGACGAAGGGAGGGGCGGGA
TGAGGGCCATGCGAGCCAGAACAGCCCCCGGCGTTCCTGCCCCCGTCCAG
GTCGCCAGGGGAGAGGGTGTATAGAAGGGGCACGTGTATGTAGATGTGAG
AGGGGCGAACAGAGCGGGCGCGCTAGCAAGGAAGGGGAGGGGACAAGGAG
AACAGAATGACCCCGAGACGCCTACATCGACGAGGTTCTTCGCAGCGGTG
GCCAGGCCCGGTGGACGTACCTGTGCGTGGGGGCCAGCGAGACGCTGGCA
GCAAAAGCAACCACCAAAACCACCTCTGCAAGGGCAGAGCTAGGAGCAGG
AGCAGGTGCAGGAGCAGGAGCTGCGGTAGCGCCAGCACCAGGAGCCATTC
CCTCCTGCCCTTCCTCGTCGACGGTGGGGGGGGACGAGGGAGGGTGGGAG
GCACCGGGGGCGGACCTGGCCGCTCTGCCCGTGTGCCAGGGCCTGCTGGT
CTTCATGGATGGGGAGGAGTATGGAGAGGAGGCCGGGATGCAGCAGGGCG
CAAGACGACGACACCGGCCGGGCTTGGAGGGCAGTCTCGGTGGCCGGTCC
ACAGACACAGACATCGTGGGGGGGGCGATCGGGAACCGCCGTCGCACTTC
CTCCTCGTCTTCCCCTTCCTCCACCCCTCATTCGGCCTTCCCTCTGGAGC
CTCCCTCGTCCAGCGCCCTGGAGGAGGCGGCTCGACGGGTGGGTTCTTTC
TGGTCGAATGCCTCAGAAGACTTCGCCAACAAGTTACACGCTCACACACC
CATGGTGCCCCAACCACCACCACCACCGCGCTCCTCTTCTTCGTCCTCCT
CTTCCTCCTCGCCCACCACCACCACCAAGAACGACCCGCCTTCCTCTCCT
CCAAACCATCCTCCCCCTCCTGCCCACCCACGCCCCCCCCAGCCGTCCGA
CGGAGGGCGTAAAGGCGGTGGTGTCGCTTCCACTACTATCGCTCCTTCTG
CCGCGGGTGGGGGTGCCACTGGAGGAGGGGCTCTGAGCCCGGCATCGTGT
CGGTTGTGCCTGGGTATGACCCTGATGACGAGCAAGATGAGGAACGCCAG
GCGACCACCCACGTGCTACGGCATCACACGGACGAGCACTCGGCCGCATC
CACCCCTTGACGAGATGTCGCTGGTGGTGGTGGTAGTGTACGTCCGGTCT
AGCAGGAAACTGGTGGGGGCCATGGAAAGGCAGGCCCAGCAGGTCCTGGT
CACGGGGCGCAGGTTGGTGGGGGGGAAGTGGGGAGGGAAGGACGGCAAAG
GGGAGGATGGGGGGGGGGGGAAGGAGGGACGAAGGGAGGGGCGGGATGAG
GGCCATGCGAGCCAGAACAGCCCCCGGCGTTCCTGCCCCCGTCCAGGTCG
CCAGGGGAGAGGGTGTATAGAAGGGGCACGTGTATGTAGATGTGAGAGGG
GCGAACAGAGCGGGCGCGCTAGCAAGGAAGGGGAGGGGACAAGGAGAACA
GAATGACCCCGAGACGCCTACATCGACGAGGTTCTTCGCAGCGGTGGCCA
GGCCCGGTGGACGTACCTGTGCGTGGGGGCCAGCGAGACGCTGGCAGCAA
AAGCAACCACCAAAACCACCTCTGCAAGGGCAGAGCTAGGAGCAGGAGCA
GGTGCAGGAGCAGGAGCTGCGGTAGCGCCAGCACCAGGAGCCATTCCCTC
CTGCCCTTCCTCGTCGACGGTGGGGGGGGACGAGGGAGGGTGGGAGGCAC
CGGGGGCGGACCTGGCCGCTCTGCCCGTGTGCCAGGGCCTGCTGGTCTTC
ATGGATGGGGAGGAGTATGGAGAGGAGGCCGGGATGCAGCAGGGCGCAAG
ACGACGACACCGGCCGGGCTTGGAGGGCAGTCTCGGTGGCCGGTCCACAG
ACACAGACATCGTGGGGGGGGCGATCGGGAACCGCCGTCGCACTTCCTCC
TCGTCTTCCCCTTCCTCCACCCCTCATTCGGCCTTCCCTCTGGAGCCTCC
CTCGTCCAGCGCCCTGGAGGAGGCGGCTCGACGGGTGGGTTCTTTCTGGT
CGAATGCCTCAGAAGACTTCGCCAACAAGTTACACGCTCACACACCCATG
GTGCCCCAACCACCACCACCACCGCGCTCCTCTTCTTCGTCCTCCTCTTC
CTCCTCGCCCACCACCACCACCAAGAACGACCCGCCTTCCTCTCCTCCAA
ACCATCCTCCCCCTCCTGCCCACCCACGCCCCCCCCAGCCGTCCGACGGA
GGGCGTAAAGGCGGTGGTGTCGCTTCCACTACTATCGCTCCTTCTGCCGC
GGGTGGGGGTGCCACTGGAGGAGGGGCTCTGAGCCCGGCATCGTGTCGGT
TGTGCCTGGGTATGACCCTGATGACGAGCAAGATGAGGAACGCCAGGCGA
CCACCCACGTGCTACGGCATCACACGGACGAGCACTCGGCCGCATCCACC
CCTTGACGAGATGTCGCTGGTGGTGGTGGTAGTG back to top
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