jgi.p|Nanoce1779_2|575212, mRNA_1072 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575212
Unique NamemRNA_1072
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2058
Alignment locationscaffold_2:1152490..1154547 -

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Properties
Property NameValue
TranscriptId575298
TrackFilteredModels2
ProteinId575212
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1152490..1154547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575212gene_1072Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575212mRNA_1072-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1072CDS_1072Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1072 ID=mRNA_1072|Name=jgi.p|Nanoce1779_2|575212|organism=Nannochloropsis oceanica|type=mRNA|length=2058bp
CAACAGGATGAAGCACCTATGGACTAGGAGCCCTCGGCTTTCAGTGTTGG
TTGCAGCAGCCGCATTCCTTGTCGCCCATGCTGCCGCAGCTTTGAAAGCC
GTGACGGAGGTGGTGAATGACGCCTCTGTAGGCTTGGACGTATATTGGCG
AAACGAGGCAGAGGGTGGAGCCTACTCCTTAATAATGACCGTAGCCAGGG
GTGCACGGAGCACTGTCAATACTTTCCAAGGCCATGGTTTCTTGGTGACT
GCGCAAGGGACAGCCGTGAGTCCGTCGGATCGCCCAAACTTTATCCAGCA
GCTGGAGAAGCAAGCCTTGCGCGTCCGGGGCAATTCACGAGAGGATTTGG
CATTCGAAAACCTGGATATAAGCAAGATTATGTCAGGGACCAAGGACAAC
ACGAAGAAGCGCAACGCCACGGGCTTTACCTCTACGTCCTCGGAGGACGA
AGCCAAAGCTGCTCTTTCCGGCGAGTCTCAAGTTTTTGTCCGGAACGATG
CCGGCAAGACGGTATACGTGTACTGGTTGAAACCCGTTGACGGATTATAC
ATATTGGTGGGCACGATGTTCGATGGGCAGGAACTGAGTTTCGATTCGTT
TATCGGCCACGATATGCATGTTTCCGCATTCTCTGCGGTGGAAGCGGCGA
AAGACGATCAAGCTCCCAACCTCCCCGTGCGTCGCTCATCCCACACTCTG
CGTGTCTTGCCCTCCAATAACGATCGGGAGGATGTGGTGCTGCATATGGA
CCAATCGCCGGACAATCTGAAGAAGAAGAAGGAGAAGAAGAGTCCAGCAA
AAGCGTCTATCCCCCGAAAAACACAACCAAAAGAAAGCTCCCCCCCGCCC
CTCACAAAACCCGCCGCACGCTACCTCAAGACCGTCACTATCGAGCAGAC
TAAGCAAGCTATCCATACTTGCCAAGGTGAGGCCACCTGCATTGTAGATG
CGCTCTACCGAGGCAAGATCGCCAAGATTCAAAATAGCATCCAAAATGCC
ATGACCAAGCGGGATGACATGGAAGACAGATACCGTGATTATGCCTGCCT
GAACCACATAACAATGGGTCCCGAAGAAATAGAGACATCCTATTGGAATT
ATACGGACGAGGGGGTCGAAGCGGCAATGGCGGCGACGACGGCGTGTGAA
AACGACGAGAGCGGGATGTGCAAAGATAGTTCTTCGTCTTTATCTTCTTC
ATCTTTCAACGGCACCCAAAAGCAAATCCGCGTTGATCACTATTTTGACA
CTGACAAGGGAAACGCCAAGATCTATTTACTACATGACATCGTCACCCCC
ACCGAGTGTGCTGAGCTCCAAAAGCGAGCCACTGGGCGACTGGCCCCGGC
TACCACTACGGGCGACATCCCAGGGGAGAAGGTCGTGTCGGCAACCCGCA
AAGCCAAGGTGGCGATGGTCAGGCCCGATCTCGACAGCGATGCACACGAC
ATCCTCGCACCCTTGCAGCGTAGATTGTTTGCCTTCGTGAACGAGCATGG
AGGGGGAGGGTACGAGAATTTCGGGTTGGCGGGCCAGGAACCTTTCAATG
TAATCATGTACAATGCGTCGGGGGATGAATATCGACCACACTGTGACGGA
TACTGTGATTCAAGCAAGTTTGCTCGGGGTGGACGGGCGGCGACGGTGGT
GCTGTACTGCGAGGAGGCGGTCAGGGGGGGGCAGACGAGCTTTACGGCTG
CAGATATTTTGTTGAAGGGTCAGGCGGGCCAAGCGGTTTTTTTCCATTAC
CGTGGTGAGGATGGGTATATGGACAGTGGGTATACCAAACATAGTGGTTG
TCCGCTTGTAGAGGGAAATAAGTGGATTGCGACGCAGTGGATTCGGGGCG
GCGTCTCGGCTGCGATGCCCTGGTATTATTTCTCGCCCACTGGGGACCAG
GACTTGGCCGCTGGCAACGTCTTTTCGCAGGACCCACGTTATATGTGAAC
GAGTGGAGATAACACGTGGTTTGTAAGGAATAGAATGAAAAAAATGCACT
GAACAGCAAGATATCTGTGATTGAAGAAAAGGAACCAAAAAAAAAAGTGG
AACTAGCT
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protein sequence of jgi.p|Nanoce1779_2|575212

>mRNA_1072-protein ID=mRNA_1072-protein|Name=jgi.p|Nanoce1779_2|575212|organism=Nannochloropsis oceanica|type=polypeptide|length=647bp
MKHLWTRSPRLSVLVAAAAFLVAHAAAALKAVTEVVNDASVGLDVYWRNE
AEGGAYSLIMTVARGARSTVNTFQGHGFLVTAQGTAVSPSDRPNFIQQLE
KQALRVRGNSREDLAFENLDISKIMSGTKDNTKKRNATGFTSTSSEDEAK
AALSGESQVFVRNDAGKTVYVYWLKPVDGLYILVGTMFDGQELSFDSFIG
HDMHVSAFSAVEAAKDDQAPNLPVRRSSHTLRVLPSNNDREDVVLHMDQS
PDNLKKKKEKKSPAKASIPRKTQPKESSPPPLTKPAARYLKTVTIEQTKQ
AIHTCQGEATCIVDALYRGKIAKIQNSIQNAMTKRDDMEDRYRDYACLNH
ITMGPEEIETSYWNYTDEGVEAAMAATTACENDESGMCKDSSSSLSSSSF
NGTQKQIRVDHYFDTDKGNAKIYLLHDIVTPTECAELQKRATGRLAPATT
TGDIPGEKVVSATRKAKVAMVRPDLDSDAHDILAPLQRRLFAFVNEHGGG
GYENFGLAGQEPFNVIMYNASGDEYRPHCDGYCDSSKFARGGRAATVVLY
CEEAVRGGQTSFTAADILLKGQAGQAVFFHYRGEDGYMDSGYTKHSGCPL
VEGNKWIATQWIRGGVSAAMPWYYFSPTGDQDLAAGNVFSQDPRYM*
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mRNA from alignment at scaffold_2:1152490..1154547-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1072 ID=mRNA_1072|Name=jgi.p|Nanoce1779_2|575212|organism=Nannochloropsis oceanica|type=mRNA|length=2058bp|location=Sequence derived from alignment at scaffold_2:1152490..1154547- (Nannochloropsis oceanica)
CAACAGGATGAAGCACCTATGGACTAGGAGCCCTCGGCTTTCAGTGTTGG
TTGCAGCAGCCGCATTCCTTGTCGCCCATGCTGCCGCAGCTTTGAAAGCC
GTGACGGAGGTGGTGAATGACGCCTCTGTAGGCTTGGACGTATATTGGCG
AAACGAGGCAGAGGGTGGAGCCTACTCCTTAATAATGACCGTAGCCAGGG
GTGCACGGAGCACTGTCAATACTTTCCAAGGCCATGGTTTCTTGGTGACT
GCGCAAGGGACAGCCGTGAGTCCGTCGGATCGCCCAAACTTTATCCAGCA
GCTGGAGAAGCAAGCCTTGCGCGTCCGGGGCAATTCACGAGAGGATTTGG
CATTCGAAAACCTGGATATAAGCAAGATTATGTCAGGGACCAAGGACAAC
ACGAAGAAGCGCAACGCCACGGGCTTTACCTCTACGTCCTCGGAGGACGA
AGCCAAAGCTGCTCTTTCCGGCGAGTCTCAAGTTTTTGTCCGGAACGATG
CCGGCAAGACGGTATACGTGTACTGGTTGAAACCCGTTGACGGATTATAC
ATATTGGTGGGCACGATGTTCGATGGGCAGGAACTGAGTTTCGATTCGTT
TATCGGCCACGATATGCATGTTTCCGCATTCTCTGCGGTGGAAGCGGCGA
AAGACGATCAAGCTCCCAACCTCCCCGTGCGTCGCTCATCCCACACTCTG
CGTGTCTTGCCCTCCAATAACGATCGGGAGGATGTGGTGCTGCATATGGA
CCAATCGCCGGACAATCTGAAGAAGAAGAAGGAGAAGAAGAGTCCAGCAA
AAGCGTCTATCCCCCGAAAAACACAACCAAAAGAAAGCTCCCCCCCGCCC
CTCACAAAACCCGCCGCACGCTACCTCAAGACCGTCACTATCGAGCAGAC
TAAGCAAGCTATCCATACTTGCCAAGGTGAGGCCACCTGCATTGTAGATG
CGCTCTACCGAGGCAAGATCGCCAAGATTCAAAATAGCATCCAAAATGCC
ATGACCAAGCGGGATGACATGGAAGACAGATACCGTGATTATGCCTGCCT
GAACCACATAACAATGGGTCCCGAAGAAATAGAGACATCCTATTGGAATT
ATACGGACGAGGGGGTCGAAGCGGCAATGGCGGCGACGACGGCGTGTGAA
AACGACGAGAGCGGGATGTGCAAAGATAGTTCTTCGTCTTTATCTTCTTC
ATCTTTCAACGGCACCCAAAAGCAAATCCGCGTTGATCACTATTTTGACA
CTGACAAGGGAAACGCCAAGATCTATTTACTACATGACATCGTCACCCCC
ACCGAGTGTGCTGAGCTCCAAAAGCGAGCCACTGGGCGACTGGCCCCGGC
TACCACTACGGGCGACATCCCAGGGGAGAAGGTCGTGTCGGCAACCCGCA
AAGCCAAGGTGGCGATGGTCAGGCCCGATCTCGACAGCGATGCACACGAC
ATCCTCGCACCCTTGCAGCGTAGATTGTTTGCCTTCGTGAACGAGCATGG
AGGGGGAGGGTACGAGAATTTCGGGTTGGCGGGCCAGGAACCTTTCAATG
TAATCATGTACAATGCGTCGGGGGATGAATATCGACCACACTGTGACGGA
TACTGTGATTCAAGCAAGTTTGCTCGGGGTGGACGGGCGGCGACGGTGGT
GCTGTACTGCGAGGAGGCGGTCAGGGGGGGGCAGACGAGCTTTACGGCTG
CAGATATTTTGTTGAAGGGTCAGGCGGGCCAAGCGGTTTTTTTCCATTAC
CGTGGTGAGGATGGGTATATGGACAGTGGGTATACCAAACATAGTGGTTG
TCCGCTTGTAGAGGGAAATAAGTGGATTGCGACGCAGTGGATTCGGGGCG
GCGTCTCGGCTGCGATGCCCTGGTATTATTTCTCGCCCACTGGGGACCAG
GACTTGGCCGCTGGCAACGTCTTTTCGCAGGACCCACGTTATATGTGAAC
GAGTGGAGATAACACGTGGTTTGTAAGGAATAGAATGAAAAAAATGCACT
GAACAGCAAGATATCTGTGATTGAAGAAAAGGAACCAAAAAAAAAAGTGG
AACTAGCT
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Coding sequence (CDS) from alignment at scaffold_2:1152490..1154547-

>mRNA_1072 ID=mRNA_1072|Name=jgi.p|Nanoce1779_2|575212|organism=Nannochloropsis oceanica|type=CDS|length=1941bp|location=Sequence derived from alignment at scaffold_2:1152490..1154547- (Nannochloropsis oceanica)
ATGAAGCACCTATGGACTAGGAGCCCTCGGCTTTCAGTGTTGGTTGCAGC
AGCCGCATTCCTTGTCGCCCATGCTGCCGCAGCTTTGAAAGCCGTGACGG
AGGTGGTGAATGACGCCTCTGTAGGCTTGGACGTATATTGGCGAAACGAG
GCAGAGGGTGGAGCCTACTCCTTAATAATGACCGTAGCCAGGGGTGCACG
GAGCACTGTCAATACTTTCCAAGGCCATGGTTTCTTGGTGACTGCGCAAG
GGACAGCCGTGAGTCCGTCGGATCGCCCAAACTTTATCCAGCAGCTGGAG
AAGCAAGCCTTGCGCGTCCGGGGCAATTCACGAGAGGATTTGGCATTCGA
AAACCTGGATATAAGCAAGATTATGTCAGGGACCAAGGACAACACGAAGA
AGCGCAACGCCACGGGCTTTACCTCTACGTCCTCGGAGGACGAAGCCAAA
GCTGCTCTTTCCGGCGAGTCTCAAGTTTTTGTCCGGAACGATGCCGGCAA
GACGGTATACGTGTACTGGTTGAAACCCGTTGACGGATTATACATATTGG
TGGGCACGATGTTCGATGGGCAGGAACTGAGTTTCGATTCGTTTATCGGC
CACGATATGCATGTTTCCGCATTCTCTGCGGTGGAAGCGGCGAAAGACGA
TCAAGCTCCCAACCTCCCCGTGCGTCGCTCATCCCACACTCTGCGTGTCT
TGCCCTCCAATAACGATCGGGAGGATGTGGTGCTGCATATGGACCAATCG
CCGGACAATCTGAAGAAGAAGAAGGAGAAGAAGAGTCCAGCAAAAGCGTC
TATCCCCCGAAAAACACAACCAAAAGAAAGCTCCCCCCCGCCCCTCACAA
AACCCGCCGCACGCTACCTCAAGACCGTCACTATCGAGCAGACTAAGCAA
GCTATCCATACTTGCCAAGGTGAGGCCACCTGCATTGTAGATGCGCTCTA
CCGAGGCAAGATCGCCAAGATTCAAAATAGCATCCAAAATGCCATGACCA
AGCGGGATGACATGGAAGACAGATACCGTGATTATGCCTGCCTGAACCAC
ATAACAATGGGTCCCGAAGAAATAGAGACATCCTATTGGAATTATACGGA
CGAGGGGGTCGAAGCGGCAATGGCGGCGACGACGGCGTGTGAAAACGACG
AGAGCGGGATGTGCAAAGATAGTTCTTCGTCTTTATCTTCTTCATCTTTC
AACGGCACCCAAAAGCAAATCCGCGTTGATCACTATTTTGACACTGACAA
GGGAAACGCCAAGATCTATTTACTACATGACATCGTCACCCCCACCGAGT
GTGCTGAGCTCCAAAAGCGAGCCACTGGGCGACTGGCCCCGGCTACCACT
ACGGGCGACATCCCAGGGGAGAAGGTCGTGTCGGCAACCCGCAAAGCCAA
GGTGGCGATGGTCAGGCCCGATCTCGACAGCGATGCACACGACATCCTCG
CACCCTTGCAGCGTAGATTGTTTGCCTTCGTGAACGAGCATGGAGGGGGA
GGGTACGAGAATTTCGGGTTGGCGGGCCAGGAACCTTTCAATGTAATCAT
GTACAATGCGTCGGGGGATGAATATCGACCACACTGTGACGGATACTGTG
ATTCAAGCAAGTTTGCTCGGGGTGGACGGGCGGCGACGGTGGTGCTGTAC
TGCGAGGAGGCGGTCAGGGGGGGGCAGACGAGCTTTACGGCTGCAGATAT
TTTGTTGAAGGGTCAGGCGGGCCAAGCGGTTTTTTTCCATTACCGTGGTG
AGGATGGGTATATGGACAGTGGGTATACCAAACATAGTGGTTGTCCGCTT
GTAGAGGGAAATAAGTGGATTGCGACGCAGTGGATTCGGGGCGGCGTCTC
GGCTGCGATGCCCTGGTATTATTTCTCGCCCACTGGGGACCAGGACTTGG
CCGCTGGCAACGTCTTTTCGCAGGACCCACGTTATATGTGA
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Synonyms
Publications