jgi.p|Nanoce1779_2|611745, mRNA_10716 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611745
Unique NamemRNA_10716
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1118
Alignment locationscaffold_58:72397..73603 +

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Properties
Property NameValue
TranscriptId611831
TrackFilteredModels2
ProteinId611745
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:72397..73603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611745gene_10716Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611745mRNA_10716-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10716CDS_10716Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10716 ID=mRNA_10716|Name=jgi.p|Nanoce1779_2|611745|organism=Nannochloropsis oceanica|type=mRNA|length=1118bp
CTTCTTCTATGGCGGCCACATCCAACCTCTTTCTTGCTTCTATAATTTAT
TAACTTTCGCCCCAACTTGGGCCCCTCCCTTCCCACACATCTCCCCTTCC
CTCCCCTCCTCCCTCCTTCCCTAATTTCCTCCCTTAGATCCGAATGAGCC
CATCAATCCTAGGATCTACCGCTTTGGTTCTGATGTTGTTTTCGAGGTAT
GGATTGGAGGGAGCGAGGGAAGGAGAGGTGGGGAAGGGAGAGAGGGAGGG
AAGGAAGGGTGGAACAATAGGTTGAAGACATGTTCCTGCAAATATTAGAC
AATCGGAGGAGGAGAAAGAAAAAGAGGACAATCACACAATCAATCGAAGG
AGGGGGATGACGAAGGGGGTACTTTATTCATTCATCCATGCACCGTCCCT
CCCTTCCCCGCCATCCCGACTCCCGGTCCATCATCCACCAGAGCTTCTTT
TCGCCGCACATCCCGTTTCAACTCGACTACCTGGAGGTATTAGACGGCTT
GTGCCACACCCTGGCCCTCATGTACCAAGCCATAGGACATCACGCCGAGT
CCCTGAAGAGGGAGGCGGCACTATTCGACGCCCTTGTCAAGATTGATGTC
AAGATCAAGCACCACATCATTAATCCCATCGCGAAGGAACTCACGGACGT
CACTGCCAGGCTGGCCAAGCTAGAGTTGGAAGGGCTGAGGGAAGGGTGGC
GGTAGTGGAGGGAGGAGGGTGAAAAGGGTGTGTGCATTGTGTGTAATATG
AGGGGATCAAAAAGGACACATGACTCTTAGGCCAGCTTCTGCCACACCCT
CGCTAGGCTTAATCACGCCATTCTCAGTTTATATTGCGTTCATCGCTCCA
ATGCTCTCAATGGGCCATATGGGCCATGTGCTTGTGTCTGTCTGCCTGCC
TCCAGCAACCGACAGAAATCTACCACAGCAATCACCAACCCTCATGGCCA
TTTCTCAAATGTGCTTCAGTCCCTCGTGCACAATAGTGCAACTTGTCGGG
CCCCTCCTCCTTACCCATTGCCCTAAACTCTTAGTTTTTGCTTCTCCCTC
CAAATTCCAGATATGAAATGGACCCGAGCGGGCGGTCGGGCGGTTGCTTC
TCCGTCGCTTCACCTTAG
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protein sequence of jgi.p|Nanoce1779_2|611745

>mRNA_10716-protein ID=mRNA_10716-protein|Name=jgi.p|Nanoce1779_2|611745|organism=Nannochloropsis oceanica|type=polypeptide|length=106bp
MHRPSLPRHPDSRSIIHQSFFSPHIPFQLDYLEVLDGLCHTLALMYQAIG
HHAESLKREAALFDALVKIDVKIKHHIINPIAKELTDVTARLAKLELEGL
REGWR*
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mRNA from alignment at scaffold_58:72397..73603+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10716 ID=mRNA_10716|Name=jgi.p|Nanoce1779_2|611745|organism=Nannochloropsis oceanica|type=mRNA|length=1207bp|location=Sequence derived from alignment at scaffold_58:72397..73603+ (Nannochloropsis oceanica)
CTTCTTCTATGGCGGCCACATCCAACCTCTTTCTTGCTTCTATAATTTAT
TAACTTTCGCCCCAACTTGGGCCCCTCCCTTCCCACACATCTCCCCTTCC
CTCCCCTCCTCCCTCCTTCCCTAATTTCCTCCCTTAGATCCGAATGAGCC
CATCAATCCTAGGATCTACCGCTTTGGTTCTGATGTTGTTTTCGAGGTAT
GGATTGGAGGGAGCGAGGGAAGGAGAGGTGGGGAAGGGAGAGAGGGAGGG
AAGGAAGGGTGGAACAATAGGTTGAAGACATGTTCCTGCAAATATTAGAC
AATCGGAGGAGGAGAAAGAAAAAGAGGACAATCACACAATCAATCGAAGG
AGGGGGATGACGAAGGGGGTACTTTATTCATTCATCCATGCACCGTCCCT
CCCTTCCCCGCCATCCCGACTCCCGGTCCATCATCCACCAGAGCTTCTTT
TCGCCGCACATCCCGTTTCAACTCGACTACCTGGAGGTATTAGACGGCTT
GTGCCACACCCTGGCCCTCATGTACCAAGCCATAGGACATCACGCCGAGT
CCCTGAAGAGGGAGGCGGCACTATTCGACGCCCTTGTCAAGATTGATGTC
AAGGTAGGCTTGTTCTATCTGCCTCCCCACCTTCCGTCTTCCACGCCTTC
CTCTTACTCGCCTCGCTTACATTTCCCCCTTTCTCTCTCAAGATCAAGCA
CCACATCATTAATCCCATCGCGAAGGAACTCACGGACGTCACTGCCAGGC
TGGCCAAGCTAGAGTTGGAAGGGCTGAGGGAAGGGTGGCGGTAGTGGAGG
GAGGAGGGTGAAAAGGGTGTGTGCATTGTGTGTAATATGAGGGGATCAAA
AAGGACACATGACTCTTAGGCCAGCTTCTGCCACACCCTCGCTAGGCTTA
ATCACGCCATTCTCAGTTTATATTGCGTTCATCGCTCCAATGCTCTCAAT
GGGCCATATGGGCCATGTGCTTGTGTCTGTCTGCCTGCCTCCAGCAACCG
ACAGAAATCTACCACAGCAATCACCAACCCTCATGGCCATTTCTCAAATG
TGCTTCAGTCCCTCGTGCACAATAGTGCAACTTGTCGGGCCCCTCCTCCT
TACCCATTGCCCTAAACTCTTAGTTTTTGCTTCTCCCTCCAAATTCCAGA
TATGAAATGGACCCGAGCGGGCGGTCGGGCGGTTGCTTCTCCGTCGCTTC
ACCTTAG
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Coding sequence (CDS) from alignment at scaffold_58:72397..73603+

>mRNA_10716 ID=mRNA_10716|Name=jgi.p|Nanoce1779_2|611745|organism=Nannochloropsis oceanica|type=CDS|length=636bp|location=Sequence derived from alignment at scaffold_58:72397..73603+ (Nannochloropsis oceanica)
ATGCACCGTCCCTCCCTTCCCCGCCATCCCGACTCCCGGTCCATCATCCA
CCAGAGCTTCTTTTCGCCGCACATCCCGTTTCAACTCGACTACCTGGAGG
TATTAGACGGCTTGTGCCACACCCTGGCCCTCATGTACCAAGCCATAGGA
CATCACGCCGAGTCCCTGAAGAGGGAGGCGGCACTATTCGACGCCCTTGT
CAAGATTGATGTCAAGATCAAGCACCACATCATTAATCCCATCGCGAAGG
AACTCACGGACGTCACTGCCAGGCTGGCCAAGCTAGAGTTGGAAGGGCTG
AGGGAAGGGTGGCGGTAGATGCACCGTCCCTCCCTTCCCCGCCATCCCGA
CTCCCGGTCCATCATCCACCAGAGCTTCTTTTCGCCGCACATCCCGTTTC
AACTCGACTACCTGGAGGTATTAGACGGCTTGTGCCACACCCTGGCCCTC
ATGTACCAAGCCATAGGACATCACGCCGAGTCCCTGAAGAGGGAGGCGGC
ACTATTCGACGCCCTTGTCAAGATTGATGTCAAGATCAAGCACCACATCA
TTAATCCCATCGCGAAGGAACTCACGGACGTCACTGCCAGGCTGGCCAAG
CTAGAGTTGGAAGGGCTGAGGGAAGGGTGGCGGTAG
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Synonyms
Publications