jgi.p|Nanoce1779_2|355403, mRNA_10715 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|355403
Unique Name	mRNA_10715
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1490
Alignment location	scaffold_58:70704..72974 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	355489
Track	FilteredModels2
ProteinId	355403

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_58	supercontig	scaffold_58:70704..72974 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|355403	gene_10715	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|355403	mRNA_10715-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10715	CDS_10715	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_58:70704..72974+
coding sequence from alignment at scaffold_58:70704..72974+

mRNA sequence

>mRNA_10715 ID=mRNA_10715|Name=jgi.p|Nanoce1779_2|355403|organism=Nannochloropsis oceanica|type=mRNA|length=1490bp
GAATGAGGGGACAACGATGTAAAGGCACACAGAAGAAAGAAATAACAAAA
GAAAGATAGACACTGTCGATCGTGTTGTCACTCGCCTTGGTGCGGGTGTG
GGAAGCAAGAGGTTTGATTGATTGATTGGTTGGAAGCACGAGGCAGATGA
GGGGGTGGGAGCTGGGCACGTAATCCCGAACCGCCTCCTCGCGAAACACA
CCCGCGCCAAACCATTCAGTGCAGTGACCAGGGCATCATGCATCCATTTT
ATGTTGGTCATTATTATACGTTGTGTCCTTGTCTTTCTACGCTTTGTACT
GCAACACTGCTGGCATCCACAATCGTACCAACCTCCCACCATATCTCTCC
CACACCCTTCCTCTCACTCCACCCCAATTCATTCACACGCTCCAGCCAAG
CAACAAGCAATGCACCTGTCCCCCACACGTCGGCAACCCACGGGGGGCTC
CTCATCTTCCCCTCCGTCTTCACCAAGCGCACGCTACTCCACCGTCGCGC
CAAGACCCACCACACGACTGCCTTTCGAAGGAGAGGAGGACGACGATGAA
GACGAGGAGGAGGAAGCGGGGTCGAGAGCCGGGGATGGGGGGAAAGGAGG
AGGAGGCGATCGGCACACGCGGCACGTGCAGGTTCAGGCGTTGGTGGAAA
AGCGGATTCTGAATCTAGACTACATACGCAGAGTGCACGACGGAGGACAG
CACTGGCTCAGCACCGTCGTTCTCTCCAAGGCCACCATACAGCGGTACAT
CGAGACGGAGGCACCTCCCTCCCGTCCTCTTGTCTTCTTCCACCTAGGCC
TTTCCCTGGCTAAGCTCCTCGACGCCCTGCCCCCCCCCCGACCCTCTTCT
CTGTTATCCGAGGGGGGGGGGGGGAGGCTGAGGGAGCAAGAGGAGAGAGA
GGATGCGGAGGCATGCACCGCACTGCTAAGGGCTCTGGCGCAGATATTTG
AGGAAATGGAATACCACACCGCCAGCGGGGCCGCACAAGCTGTCAAGCTT
TTTCTGGCCAAGCCCTCTGAGTCTCCCTATCCCGAGCAGACCCCGGCAGA
TCCGAATGAGCCCATCAATCCTAGGATCTACCGCTTTGGTTCTGATGTTG
TTTTCGAGGTATGGATTGGAGGGAGCGAGGGAAGGAGAGGTGGGGAAGGG
AGAGAGGGAGGGAAGGAAGGGTGGAACAATAGGTTGAAGACATGTTCCTG
CAAATATTAGACAATCGGAGGAGGAGAAAGAAAAAGAGGACAATCACACA
ATCAATCGAAGGAGGGGGATGACGAAGGGGGTACTTTATTCATTCATCCA
TGCACCGTCCCTCCCTTCCCCGCCATCCCGACTCCCGGTCCATCATCCAC
CAGAGCTTCTTTTCGCCGCACATCCCGTTTCAACTCGACTACCTGGAGGT
ATTAGACGGCTTGTGCCACACCCTGGCCCTCATGTACCAAGCCATAGGAC
ATCACGCCGAGTCCCTGAAGAGGGAGGCGGCACTATTCGA

protein sequence of jgi.p|Nanoce1779_2|355403

>mRNA_10715-protein ID=mRNA_10715-protein|Name=jgi.p|Nanoce1779_2|355403|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MLVIIIRCVLVFLRFVLQHCWHPQSYQPPTISLPHPSSHSTPIHSHAPAK
QQAMHLSPTRRQPTGGSSSSPPSSPSARYSTVAPRPTTRLPFEGEEDDDE
DEEEEAGSRAGDGGKGGGGDRHTRHVQVQALVEKRILNLDYIRRVHDGGQ
HWLSTVVLSKATIQRYIETEAPPSRPLVFFHLGLSLAKLLDALPPPRPSS
LLSEGGGGRLREQEEREDAEACTALLRALAQIFEEMEYHTASGAAQAVKL
FLAKPSESPYPEQTPADPNEPINPRIYRFGSDVVFEVWIGGSEGRRGGEG
REGGKEGWNNRLKTCSCKY*

mRNA from alignment at scaffold_58:70704..72974+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10715 ID=mRNA_10715|Name=jgi.p|Nanoce1779_2|355403|organism=Nannochloropsis oceanica|type=mRNA|length=2271bp|location=Sequence derived from alignment at scaffold_58:70704..72974+ (Nannochloropsis oceanica)
GAATGAGGGGACAACGATGTAAAGGCACACAGAAGAAAGAAATAACAAAA
GAAAGATAGACACTGTCGATCGTGTTGTCACTCGCCTTGGTGCGGGTGTG
GGAAGCAAGAGGTTTGATTGATTGATTGGTTGGAAGCACGAGGCAGATGA
GGGGGTGGGAGCTGGGCACGTAATCCCGAACCGCCTCCTCGCGAAACACA
CCCGCGCCAAACCATTCAGTGCAGTGACCAGGGCATCATGCATCCATTTT
ATGTTGGTCATTATTATACGTTGTGTCCTTGTCTTTCTACGCTTTGTACT
GCAACACTGCTGGCATCCACAATCGTACCAACCTCCCACCATATCTCTCC
CACACCCTTCCTCTCACTCCACCCCAATTCATTCACACGCTCCAGCCAAG
CAACAAGCAATGCACCTGTCCCCCACACGTCGGCAACCCACGGGGGGCTC
CTCATCTTCCCCTCCGTCTTCACCAAGCGCACGCTACTCCACCGTCGCGC
CAAGACCCACCACACGACTGCCTTTCGAAGGAGAGGAGGACGACGATGAA
GACGAGGAGGAGGAAGCGGGGTCGAGAGCCGGGGATGGGGGGAAAGGAGG
AGGAGGCGATCGGCACACGCGGCACGTGCAGGTTCAGGCGTTGGTGGAAA
AGCGGATTCTGAATCTAGACTACATACGCAGAGTGCACGACGGTGCGTGA
GGAGGATAGGAGGGGAAAGGAGAGGGAGTGTTGGATGGAAAGGGCGGTGT
GGCGATGGCGAGATCAGCGTGAGCATTCATCGAGACTTAGAAGACCGGCT
ACCATAATGTACAGGCTCGGTGCAGAAGCTGCCGGTGACTCATGGTCCAT
ATCCCACAAGCCCTTCCATCCCTTTCTCCCTCCCTCCTTCCTTTCCCGCT
CTCACAGGAGGACAGCACTGGCTCAGCACCGTCGTTCTCTCCAAGGCCAC
CATACAGCGGTACATCGAGACGGAGGTAGGGAAAGAGAGGGCGCGGAGAA
TGATGGAGAGATGCAGGGCAAGAAGGAAAGATAGCAAGGGCGTTGGGTGG
AGAAGTGAGGCATGGAAGCAGCGCCACCCTAATTGATTTGTCCCGGCGTC
ACCCCCAAACATAGGCACCTCCCTCCCGTCCTCTTGTCTTCTTCCACCTA
GGCCTTTCCCTGGCTAAGCTCCTCGACGCCCTGCCCCCCCCCCGACCCTC
TTCTCTGTTATCCGAGGGGGGGGGGGGGAGGCTGAGGGAGCAAGAGGAGA
GAGAGGATGCGGAGGCATGCACCGCACTGCTAAGGGCTCTGGCGCAGATA
TTTGAGGTAGGAAGAAAGGAAAAGAGGTAGTGAGGGAGGATGGGAGAAAG
GGAGGGAGGGAGGGAAAGAGGAAGTGATTGCCTGACCTTACCAACTCGAT
CGATTCTGACCTCTTGCGCTCCTTACTCTCGCATTTTCCCTCCCTGCCCC
CCTCCCTCCCTCCCTTTGTCTCTCCCCAGGAAATGGAATACCACACCGCC
AGCGGGGCCGCACAAGCTGTCAAGCTTTTTCTGGCCAAGCCCTCTGAGTC
TCCCTATCCCGAGCAGACCCCGGCAGGTACAGGAGGCACTGCCCCCCCCC
CCCTCCCGCCCTCCCTCCTCGTATTTATCACCATTATTACCATTAAGTCG
AAATTTTGTTGTGACATTGATTTCATTGTTTCCTTGTTGTTTTCTTCTTC
TATGGCGGCCACATCCAACCTCTTTCTTGCTTCTATAATTTATTAACTTT
CGCCCCAACTTGGGCCCCTCCCTTCCCACACATCTCCCCTTCCCTCCCCT
CCTCCCTCCTTCCCTAATTTCCTCCCTTAGATCCGAATGAGCCCATCAAT
CCTAGGATCTACCGCTTTGGTTCTGATGTTGTTTTCGAGGTATGGATTGG
AGGGAGCGAGGGAAGGAGAGGTGGGGAAGGGAGAGAGGGAGGGAAGGAAG
GGTGGAACAATAGGTTGAAGACATGTTCCTGCAAATATTAGACAATCGGA
GGAGGAGAAAGAAAAAGAGGACAATCACACAATCAATCGAAGGAGGGGGA
TGACGAAGGGGGTACTTTATTCATTCATCCATGCACCGTCCCTCCCTTCC
CCGCCATCCCGACTCCCGGTCCATCATCCACCAGAGCTTCTTTTCGCCGC
ACATCCCGTTTCAACTCGACTACCTGGAGGTATTAGACGGCTTGTGCCAC
ACCCTGGCCCTCATGTACCAAGCCATAGGACATCACGCCGAGTCCCTGAA
GAGGGAGGCGGCACTATTCGA

Coding sequence (CDS) from alignment at scaffold_58:70704..72974+

>mRNA_10715 ID=mRNA_10715|Name=jgi.p|Nanoce1779_2|355403|organism=Nannochloropsis oceanica|type=CDS|length=4800bp|location=Sequence derived from alignment at scaffold_58:70704..72974+ (Nannochloropsis oceanica)
ATGTTGGTCATTATTATACGTTGTGTCCTTGTCTTTCTACGCTTTGTACT
GCAACACTGCTGGCATCCACAATCGTACCAACCTCCCACCATATCTCTCC
CACACCCTTCCTCTCACTCCACCCCAATTCATTCACACGCTCCAGCCAAG
CAACAAGCAATGCACCTGTCCCCCACACGTCGGCAACCCACGGGGGGCTC
CTCATCTTCCCCTCCGTCTTCACCAAGCGCACGCTACTCCACCGTCGCGC
CAAGACCCACCACACGACTGCCTTTCGAAGGAGAGGAGGACGACGATGAA
GACGAGGAGGAGGAAGCGGGGTCGAGAGCCGGGGATGGGGGGAAAGGAGG
AGGAGGCGATCGGCACACGCGGCACGTGCAGGTTCAGGCGTTGGTGGAAA
AGCGGATTCTGAATCTAGACTACATACGCAGAGTGCACGACGGAGGACAG
CACTGGCTCAGCACCGTCGTTCTCTCCAAGGCCACCATACAGCGGTACAT
CGAGACGGAGGCACCTCCCTCCCGTCCTCTTGTCTTCTTCCACCTAGGCC
TTTCCCTGGCTAAGCTCCTCGACGCCCTGCCCCCCCCCCGACCCTCTTCT
CTGTTATCCGAGGGGGGGGGGGGGAGGCTGAGGGAGCAAGAGGAGAGAGA
GGATGCGGAGGCATGCACCGCACTGCTAAGGGCTCTGGCGCAGATATTTG
AGGAAATGGAATACCACACCGCCAGCGGGGCCGCACAAGCTGTCAAGCTT
TTTCTGGCCAAGCCCTCTGAGTCTCCCTATCCCGAGCAGACCCCGGCAGA
TCCGAATGAGCCCATCAATCCTAGGATCTACCGCTTTGGTTCTGATGTTG
TTTTCGAGGTATGGATTGGAGGGAGCGAGGGAAGGAGAGGTGGGGAAGGG
AGAGAGGGAGGGAAGGAAGGGTGGAACAATAGGTTGAAGACATGTTCCTG
CAAATATTAGATGTTGGTCATTATTATACGTTGTGTCCTTGTCTTTCTAC
GCTTTGTACTGCAACACTGCTGGCATCCACAATCGTACCAACCTCCCACC
ATATCTCTCCCACACCCTTCCTCTCACTCCACCCCAATTCATTCACACGC
TCCAGCCAAGCAACAAGCAATGCACCTGTCCCCCACACGTCGGCAACCCA
CGGGGGGCTCCTCATCTTCCCCTCCGTCTTCACCAAGCGCACGCTACTCC
ACCGTCGCGCCAAGACCCACCACACGACTGCCTTTCGAAGGAGAGGAGGA
CGACGATGAAGACGAGGAGGAGGAAGCGGGGTCGAGAGCCGGGGATGGGG
GGAAAGGAGGAGGAGGCGATCGGCACACGCGGCACGTGCAGGTTCAGGCG
TTGGTGGAAAAGCGGATTCTGAATCTAGACTACATACGCAGAGTGCACGA
CGGAGGACAGCACTGGCTCAGCACCGTCGTTCTCTCCAAGGCCACCATAC
AGCGGTACATCGAGACGGAGGCACCTCCCTCCCGTCCTCTTGTCTTCTTC
CACCTAGGCCTTTCCCTGGCTAAGCTCCTCGACGCCCTGCCCCCCCCCCG
ACCCTCTTCTCTGTTATCCGAGGGGGGGGGGGGGAGGCTGAGGGAGCAAG
AGGAGAGAGAGGATGCGGAGGCATGCACCGCACTGCTAAGGGCTCTGGCG
CAGATATTTGAGGAAATGGAATACCACACCGCCAGCGGGGCCGCACAAGC
TGTCAAGCTTTTTCTGGCCAAGCCCTCTGAGTCTCCCTATCCCGAGCAGA
CCCCGGCAGATCCGAATGAGCCCATCAATCCTAGGATCTACCGCTTTGGT
TCTGATGTTGTTTTCGAGGTATGGATTGGAGGGAGCGAGGGAAGGAGAGG
TGGGGAAGGGAGAGAGGGAGGGAAGGAAGGGTGGAACAATAGGTTGAAGA
CATGTTCCTGCAAATATTAGATGTTGGTCATTATTATACGTTGTGTCCTT
GTCTTTCTACGCTTTGTACTGCAACACTGCTGGCATCCACAATCGTACCA
ACCTCCCACCATATCTCTCCCACACCCTTCCTCTCACTCCACCCCAATTC
ATTCACACGCTCCAGCCAAGCAACAAGCAATGCACCTGTCCCCCACACGT
CGGCAACCCACGGGGGGCTCCTCATCTTCCCCTCCGTCTTCACCAAGCGC
ACGCTACTCCACCGTCGCGCCAAGACCCACCACACGACTGCCTTTCGAAG
GAGAGGAGGACGACGATGAAGACGAGGAGGAGGAAGCGGGGTCGAGAGCC
GGGGATGGGGGGAAAGGAGGAGGAGGCGATCGGCACACGCGGCACGTGCA
GGTTCAGGCGTTGGTGGAAAAGCGGATTCTGAATCTAGACTACATACGCA
GAGTGCACGACGGAGGACAGCACTGGCTCAGCACCGTCGTTCTCTCCAAG
GCCACCATACAGCGGTACATCGAGACGGAGGCACCTCCCTCCCGTCCTCT
TGTCTTCTTCCACCTAGGCCTTTCCCTGGCTAAGCTCCTCGACGCCCTGC
CCCCCCCCCGACCCTCTTCTCTGTTATCCGAGGGGGGGGGGGGGAGGCTG
AGGGAGCAAGAGGAGAGAGAGGATGCGGAGGCATGCACCGCACTGCTAAG
GGCTCTGGCGCAGATATTTGAGGAAATGGAATACCACACCGCCAGCGGGG
CCGCACAAGCTGTCAAGCTTTTTCTGGCCAAGCCCTCTGAGTCTCCCTAT
CCCGAGCAGACCCCGGCAGATCCGAATGAGCCCATCAATCCTAGGATCTA
CCGCTTTGGTTCTGATGTTGTTTTCGAGGTATGGATTGGAGGGAGCGAGG
GAAGGAGAGGTGGGGAAGGGAGAGAGGGAGGGAAGGAAGGGTGGAACAAT
AGGTTGAAGACATGTTCCTGCAAATATTAGATGTTGGTCATTATTATACG
TTGTGTCCTTGTCTTTCTACGCTTTGTACTGCAACACTGCTGGCATCCAC
AATCGTACCAACCTCCCACCATATCTCTCCCACACCCTTCCTCTCACTCC
ACCCCAATTCATTCACACGCTCCAGCCAAGCAACAAGCAATGCACCTGTC
CCCCACACGTCGGCAACCCACGGGGGGCTCCTCATCTTCCCCTCCGTCTT
CACCAAGCGCACGCTACTCCACCGTCGCGCCAAGACCCACCACACGACTG
CCTTTCGAAGGAGAGGAGGACGACGATGAAGACGAGGAGGAGGAAGCGGG
GTCGAGAGCCGGGGATGGGGGGAAAGGAGGAGGAGGCGATCGGCACACGC
GGCACGTGCAGGTTCAGGCGTTGGTGGAAAAGCGGATTCTGAATCTAGAC
TACATACGCAGAGTGCACGACGGAGGACAGCACTGGCTCAGCACCGTCGT
TCTCTCCAAGGCCACCATACAGCGGTACATCGAGACGGAGGCACCTCCCT
CCCGTCCTCTTGTCTTCTTCCACCTAGGCCTTTCCCTGGCTAAGCTCCTC
GACGCCCTGCCCCCCCCCCGACCCTCTTCTCTGTTATCCGAGGGGGGGGG
GGGGAGGCTGAGGGAGCAAGAGGAGAGAGAGGATGCGGAGGCATGCACCG
CACTGCTAAGGGCTCTGGCGCAGATATTTGAGGAAATGGAATACCACACC
GCCAGCGGGGCCGCACAAGCTGTCAAGCTTTTTCTGGCCAAGCCCTCTGA
GTCTCCCTATCCCGAGCAGACCCCGGCAGATCCGAATGAGCCCATCAATC
CTAGGATCTACCGCTTTGGTTCTGATGTTGTTTTCGAGGTATGGATTGGA
GGGAGCGAGGGAAGGAGAGGTGGGGAAGGGAGAGAGGGAGGGAAGGAAGG
GTGGAACAATAGGTTGAAGACATGTTCCTGCAAATATTAGATGTTGGTCA
TTATTATACGTTGTGTCCTTGTCTTTCTACGCTTTGTACTGCAACACTGC
TGGCATCCACAATCGTACCAACCTCCCACCATATCTCTCCCACACCCTTC
CTCTCACTCCACCCCAATTCATTCACACGCTCCAGCCAAGCAACAAGCAA
TGCACCTGTCCCCCACACGTCGGCAACCCACGGGGGGCTCCTCATCTTCC
CCTCCGTCTTCACCAAGCGCACGCTACTCCACCGTCGCGCCAAGACCCAC
CACACGACTGCCTTTCGAAGGAGAGGAGGACGACGATGAAGACGAGGAGG
AGGAAGCGGGGTCGAGAGCCGGGGATGGGGGGAAAGGAGGAGGAGGCGAT
CGGCACACGCGGCACGTGCAGGTTCAGGCGTTGGTGGAAAAGCGGATTCT
GAATCTAGACTACATACGCAGAGTGCACGACGGAGGACAGCACTGGCTCA
GCACCGTCGTTCTCTCCAAGGCCACCATACAGCGGTACATCGAGACGGAG
GCACCTCCCTCCCGTCCTCTTGTCTTCTTCCACCTAGGCCTTTCCCTGGC
TAAGCTCCTCGACGCCCTGCCCCCCCCCCGACCCTCTTCTCTGTTATCCG
AGGGGGGGGGGGGGAGGCTGAGGGAGCAAGAGGAGAGAGAGGATGCGGAG
GCATGCACCGCACTGCTAAGGGCTCTGGCGCAGATATTTGAGGAAATGGA
ATACCACACCGCCAGCGGGGCCGCACAAGCTGTCAAGCTTTTTCTGGCCA
AGCCCTCTGAGTCTCCCTATCCCGAGCAGACCCCGGCAGATCCGAATGAG
CCCATCAATCCTAGGATCTACCGCTTTGGTTCTGATGTTGTTTTCGAGGT
ATGGATTGGAGGGAGCGAGGGAAGGAGAGGTGGGGAAGGGAGAGAGGGAG
GGAAGGAAGGGTGGAACAATAGGTTGAAGACATGTTCCTGCAAATATTAG

Synonyms

Publications