jgi.p|Nanoce1779_2|611700, mRNA_10710 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611700
Unique NamemRNA_10710
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1567
Alignment locationscaffold_58:39648..41214 +

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Properties
Property NameValue
TranscriptId611786
TrackFilteredModels2
ProteinId611700
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:39648..41214 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611700gene_10710Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611700mRNA_10710-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10710CDS_10710Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10710 ID=mRNA_10710|Name=jgi.p|Nanoce1779_2|611700|organism=Nannochloropsis oceanica|type=mRNA|length=1567bp
AGACACAGATACAGATACACGCCGTCTTATAGACTGGTATTCAACCGAGA
AGCATGTACCTGCCCCTCGCCCTCCCCCTGCTTGCCGTCCTGGGCGGCGC
CTGGGCGCCTACCGCCGTTGCCCAGGACTGTCCCGATCTTGTTCTGGGCG
CCAAGGTGCAACCCAATGCCAAGCGTGGGATCCTGGCAGGCCGACAGAAG
GCCAAGATCACCATTAGGCTTCGAAGTATGGAAGCCGCACAGGACGTCAA
TTTCAAGATGGATCTGCCCGCCGGCTTGTCCGTGGTGAAGCTGAAGGCCC
GCCCGTCCCGCATGCTCTCCCCGGCGCAGAGCATCCAGAACCCGGATGGG
ACGACGGCCATCTACTGGACGGACTTTGACTTCAAAAAGAGCTCCAAGCG
TGTCTTCCAGGCCGTGGTGATCGCCGACGACTGTGCCCCTGAGACGCTGG
ATGTCACTGCCCTGGTTTACCTTGTCAACGCCACGGACCTGTCCGCTTAC
TGTGCTGTACCCTTGGCCGAGCCCGCGGTCGTGCGTGTGCGGTATCCAGG
CGACAAGAAGACGGGCAAACACGCTTCGTCGAAACCTGTCACATGCGCGC
CGACCCCGGCCCCGAGCGTCAACCCCGCAACTCCCTTCCAACTTTTTGGT
GAGGGGCAGCGATGCTTGCAGGCAGGGCAACTGGCGCCTTTTGCTCCAGA
TCGCCGTCTGTCGGCCCTAGGTGATGGGGAACTTGATTCGCTAAGCGATG
TTGGTGGCAAGCACCGTCGACTGCCTGTGCAGATTGATACCCCGACGGAG
TGCTTCGAATACTGCTCGATCAATGGGAATGAATCGACTCCGTTTTTCTT
CAACTGGAACACGGTGACCACTCAGTGCTTTTGCTGCGGTGGAGAATGTA
CTTTGATTCTTGACCCTGATTTCAATGCCTTCAAGGTTGTCGAGGCCGCT
ACTGGGGCTCCCTCTGCGTCTCCCTCAAGCAGCCCTTCGGCTTCTCCCTC
GGGCAGCCCTACAACTGCCCCTACCGCGAGCCCATCTTCATCGCCATCTG
CATCTGCCTCGGGCAGTCCGACCCAATCTCCAACGGCCACGCCTACTACA
TCCCCGACTGCCACGCCTACGACAGCCCCGACGGCCACGCCTACTACATC
TCCGACGGCGAATAGTCCAATTTGATTCAACAAGGACGCACTCGTGGTCA
TGGCGGATGGCACGTCTAAGCCCGTTCATGCACTTCGCAGAGGCGATCTC
GTTTCGGTCGACCCGCACAACCTCCATATCCATGCCAAGATGCTTTCTCT
TGTTGAGGCTCCCTTGGGCGTGAATGGTGGCGGCGTGATGATCGACGTAT
GTGAGCTTGCCCCACAAAACTAAGGAAATATGTATCAAGAACTTCCCCAA
GAAAGAAAAGAGAAGAAAACTTGAAGAAATGACAAAGAAGAGGAAATGAG
AGAAGAACAAATGAACGCATTTCGATGTGACCTAATTATATCTCTTCTAC
CTTCAGGCAGAAAACAAGTCGTCTCTTTATGTTCCTTTGGTTCCTCTCCT
TCACCTACATCCTCATA
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protein sequence of jgi.p|Nanoce1779_2|611700

>mRNA_10710-protein ID=mRNA_10710-protein|Name=jgi.p|Nanoce1779_2|611700|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MYLPLALPLLAVLGGAWAPTAVAQDCPDLVLGAKVQPNAKRGILAGRQKA
KITIRLRSMEAAQDVNFKMDLPAGLSVVKLKARPSRMLSPAQSIQNPDGT
TAIYWTDFDFKKSSKRVFQAVVIADDCAPETLDVTALVYLVNATDLSAYC
AVPLAEPAVVRVRYPGDKKTGKHASSKPVTCAPTPAPSVNPATPFQLFGE
GQRCLQAGQLAPFAPDRRLSALGDGELDSLSDVGGKHRRLPVQIDTPTEC
FEYCSINGNESTPFFFNWNTVTTQCFCCGGECTLILDPDFNAFKVVEAAT
GAPSASPSSSPSASPSGSPTTAPTASPSSSPSASASGSPTQSPTATPTTS
PTATPTTAPTATPTTSPTANSPI*
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mRNA from alignment at scaffold_58:39648..41214+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10710 ID=mRNA_10710|Name=jgi.p|Nanoce1779_2|611700|organism=Nannochloropsis oceanica|type=mRNA|length=1567bp|location=Sequence derived from alignment at scaffold_58:39648..41214+ (Nannochloropsis oceanica)
AGACACAGATACAGATACACGCCGTCTTATAGACTGGTATTCAACCGAGA
AGCATGTACCTGCCCCTCGCCCTCCCCCTGCTTGCCGTCCTGGGCGGCGC
CTGGGCGCCTACCGCCGTTGCCCAGGACTGTCCCGATCTTGTTCTGGGCG
CCAAGGTGCAACCCAATGCCAAGCGTGGGATCCTGGCAGGCCGACAGAAG
GCCAAGATCACCATTAGGCTTCGAAGTATGGAAGCCGCACAGGACGTCAA
TTTCAAGATGGATCTGCCCGCCGGCTTGTCCGTGGTGAAGCTGAAGGCCC
GCCCGTCCCGCATGCTCTCCCCGGCGCAGAGCATCCAGAACCCGGATGGG
ACGACGGCCATCTACTGGACGGACTTTGACTTCAAAAAGAGCTCCAAGCG
TGTCTTCCAGGCCGTGGTGATCGCCGACGACTGTGCCCCTGAGACGCTGG
ATGTCACTGCCCTGGTTTACCTTGTCAACGCCACGGACCTGTCCGCTTAC
TGTGCTGTACCCTTGGCCGAGCCCGCGGTCGTGCGTGTGCGGTATCCAGG
CGACAAGAAGACGGGCAAACACGCTTCGTCGAAACCTGTCACATGCGCGC
CGACCCCGGCCCCGAGCGTCAACCCCGCAACTCCCTTCCAACTTTTTGGT
GAGGGGCAGCGATGCTTGCAGGCAGGGCAACTGGCGCCTTTTGCTCCAGA
TCGCCGTCTGTCGGCCCTAGGTGATGGGGAACTTGATTCGCTAAGCGATG
TTGGTGGCAAGCACCGTCGACTGCCTGTGCAGATTGATACCCCGACGGAG
TGCTTCGAATACTGCTCGATCAATGGGAATGAATCGACTCCGTTTTTCTT
CAACTGGAACACGGTGACCACTCAGTGCTTTTGCTGCGGTGGAGAATGTA
CTTTGATTCTTGACCCTGATTTCAATGCCTTCAAGGTTGTCGAGGCCGCT
ACTGGGGCTCCCTCTGCGTCTCCCTCAAGCAGCCCTTCGGCTTCTCCCTC
GGGCAGCCCTACAACTGCCCCTACCGCGAGCCCATCTTCATCGCCATCTG
CATCTGCCTCGGGCAGTCCGACCCAATCTCCAACGGCCACGCCTACTACA
TCCCCGACTGCCACGCCTACGACAGCCCCGACGGCCACGCCTACTACATC
TCCGACGGCGAATAGTCCAATTTGATTCAACAAGGACGCACTCGTGGTCA
TGGCGGATGGCACGTCTAAGCCCGTTCATGCACTTCGCAGAGGCGATCTC
GTTTCGGTCGACCCGCACAACCTCCATATCCATGCCAAGATGCTTTCTCT
TGTTGAGGCTCCCTTGGGCGTGAATGGTGGCGGCGTGATGATCGACGTAT
GTGAGCTTGCCCCACAAAACTAAGGAAATATGTATCAAGAACTTCCCCAA
GAAAGAAAAGAGAAGAAAACTTGAAGAAATGACAAAGAAGAGGAAATGAG
AGAAGAACAAATGAACGCATTTCGATGTGACCTAATTATATCTCTTCTAC
CTTCAGGCAGAAAACAAGTCGTCTCTTTATGTTCCTTTGGTTCCTCTCCT
TCACCTACATCCTCATA
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Coding sequence (CDS) from alignment at scaffold_58:39648..41214+

>mRNA_10710 ID=mRNA_10710|Name=jgi.p|Nanoce1779_2|611700|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at scaffold_58:39648..41214+ (Nannochloropsis oceanica)
ATGTACCTGCCCCTCGCCCTCCCCCTGCTTGCCGTCCTGGGCGGCGCCTG
GGCGCCTACCGCCGTTGCCCAGGACTGTCCCGATCTTGTTCTGGGCGCCA
AGGTGCAACCCAATGCCAAGCGTGGGATCCTGGCAGGCCGACAGAAGGCC
AAGATCACCATTAGGCTTCGAAGTATGGAAGCCGCACAGGACGTCAATTT
CAAGATGGATCTGCCCGCCGGCTTGTCCGTGGTGAAGCTGAAGGCCCGCC
CGTCCCGCATGCTCTCCCCGGCGCAGAGCATCCAGAACCCGGATGGGACG
ACGGCCATCTACTGGACGGACTTTGACTTCAAAAAGAGCTCCAAGCGTGT
CTTCCAGGCCGTGGTGATCGCCGACGACTGTGCCCCTGAGACGCTGGATG
TCACTGCCCTGGTTTACCTTGTCAACGCCACGGACCTGTCCGCTTACTGT
GCTGTACCCTTGGCCGAGCCCGCGGTCGTGCGTGTGCGGTATCCAGGCGA
CAAGAAGACGGGCAAACACGCTTCGTCGAAACCTGTCACATGCGCGCCGA
CCCCGGCCCCGAGCGTCAACCCCGCAACTCCCTTCCAACTTTTTGGTGAG
GGGCAGCGATGCTTGCAGGCAGGGCAACTGGCGCCTTTTGCTCCAGATCG
CCGTCTGTCGGCCCTAGGTGATGGGGAACTTGATTCGCTAAGCGATGTTG
GTGGCAAGCACCGTCGACTGCCTGTGCAGATTGATACCCCGACGGAGTGC
TTCGAATACTGCTCGATCAATGGGAATGAATCGACTCCGTTTTTCTTCAA
CTGGAACACGGTGACCACTCAGTGCTTTTGCTGCGGTGGAGAATGTACTT
TGATTCTTGACCCTGATTTCAATGCCTTCAAGGTTGTCGAGGCCGCTACT
GGGGCTCCCTCTGCGTCTCCCTCAAGCAGCCCTTCGGCTTCTCCCTCGGG
CAGCCCTACAACTGCCCCTACCGCGAGCCCATCTTCATCGCCATCTGCAT
CTGCCTCGGGCAGTCCGACCCAATCTCCAACGGCCACGCCTACTACATCC
CCGACTGCCACGCCTACGACAGCCCCGACGGCCACGCCTACTACATCTCC
GACGGCGAATAGTCCAATTTGA
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Synonyms
Publications