jgi.p|Nanoce1779_2|569883, mRNA_10708 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|569883
Unique NamemRNA_10708
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length486
Alignment locationscaffold_58:32307..32792 +

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Properties
Property NameValue
TranscriptId569969
TrackFilteredModels2
ProteinId569883
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:32307..32792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|569883gene_10708Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|569883mRNA_10708-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10708CDS_10708Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10708 ID=mRNA_10708|Name=jgi.p|Nanoce1779_2|569883|organism=Nannochloropsis oceanica|type=mRNA|length=486bp
ATGCTTTCTCTTGTTGAGGCTCCCTTGGGCGTGAATGGTGGCGGCGCGAT
GATCGACGTATGTGAGCTTGCCCCAGGCTTTCTGATTAATCCTACTCATC
CACTCCTCATGAATGGAACCCGCTGGATTCGTCCCCACTGGGAGTTCGCC
TGTGACACTAAGAGGCACTTCCCGAGCCTCTTTAACATCATTCTGGAGGA
AGGTCCGCACCATACAGTTAACATCCAGGGAATTGCCGTGGCCACGTACA
TCAAGTATCCCGTGGGTGTGCCCATGATTGATCGACCCTACAAGTTGGAG
CAGTACCGCATTGTGGAACAGAGCCCCGGGTTCGCAACGGGACATGTGGT
GATCGACACTCTGAAATTCCTCCAAATCAAGAGGGACTGGCAGCTCGCCA
ATCCGATTGCTGCGGCGGAGGACTCTCATCAGGTGTCGTCGCTGCCGCCG
GTGTCATCCGTGCATTCCCCCCACATGGAGCTTTAG
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protein sequence of jgi.p|Nanoce1779_2|569883

>mRNA_10708-protein ID=mRNA_10708-protein|Name=jgi.p|Nanoce1779_2|569883|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MLSLVEAPLGVNGGGAMIDVCELAPGFLINPTHPLLMNGTRWIRPHWEFA
CDTKRHFPSLFNIILEEGPHHTVNIQGIAVATYIKYPVGVPMIDRPYKLE
QYRIVEQSPGFATGHVVIDTLKFLQIKRDWQLANPIAAAEDSHQVSSLPP
VSSVHSPHMEL*
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mRNA from alignment at scaffold_58:32307..32792+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10708 ID=mRNA_10708|Name=jgi.p|Nanoce1779_2|569883|organism=Nannochloropsis oceanica|type=mRNA|length=486bp|location=Sequence derived from alignment at scaffold_58:32307..32792+ (Nannochloropsis oceanica)
ATGCTTTCTCTTGTTGAGGCTCCCTTGGGCGTGAATGGTGGCGGCGCGAT
GATCGACGTATGTGAGCTTGCCCCAGGCTTTCTGATTAATCCTACTCATC
CACTCCTCATGAATGGAACCCGCTGGATTCGTCCCCACTGGGAGTTCGCC
TGTGACACTAAGAGGCACTTCCCGAGCCTCTTTAACATCATTCTGGAGGA
AGGTCCGCACCATACAGTTAACATCCAGGGAATTGCCGTGGCCACGTACA
TCAAGTATCCCGTGGGTGTGCCCATGATTGATCGACCCTACAAGTTGGAG
CAGTACCGCATTGTGGAACAGAGCCCCGGGTTCGCAACGGGACATGTGGT
GATCGACACTCTGAAATTCCTCCAAATCAAGAGGGACTGGCAGCTCGCCA
ATCCGATTGCTGCGGCGGAGGACTCTCATCAGGTGTCGTCGCTGCCGCCG
GTGTCATCCGTGCATTCCCCCCACATGGAGCTTTAG
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Coding sequence (CDS) from alignment at scaffold_58:32307..32792+

>mRNA_10708 ID=mRNA_10708|Name=jgi.p|Nanoce1779_2|569883|organism=Nannochloropsis oceanica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_58:32307..32792+ (Nannochloropsis oceanica)
ATGCTTTCTCTTGTTGAGGCTCCCTTGGGCGTGAATGGTGGCGGCGCGAT
GATCGACGTATGTGAGCTTGCCCCAGGCTTTCTGATTAATCCTACTCATC
CACTCCTCATGAATGGAACCCGCTGGATTCGTCCCCACTGGGAGTTCGCC
TGTGACACTAAGAGGCACTTCCCGAGCCTCTTTAACATCATTCTGGAGGA
AGGTCCGCACCATACAGTTAACATCCAGGGAATTGCCGTGGCCACGTACA
TCAAGTATCCCGTGGGTGTGCCCATGATTGATCGACCCTACAAGTTGGAG
CAGTACCGCATTGTGGAACAGAGCCCCGGGTTCGCAACGGGACATGTGGT
GATCGACACTCTGAAATTCCTCCAAATCAAGAGGGACTGGCAGCTCGCCA
ATCCGATTGCTGCGGCGGAGGACTCTCATCAGGTGTCGTCGCTGCCGCCG
GTGTCATCCGTGCATTCCCCCCACATGGAGCTTTAG
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Synonyms
Publications