jgi.p|Nanoce1779_2|662712, mRNA_10706 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|662712
Unique Name	mRNA_10706
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1603
Alignment location	scaffold_58:22238..23968 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	662798
Track	FilteredModels2
ProteinId	662712

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_58	supercontig	scaffold_58:22238..23968 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|662712	gene_10706	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|662712	mRNA_10706-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10706	CDS_10706	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_58:22238..23968+
coding sequence from alignment at scaffold_58:22238..23968+

mRNA sequence

>mRNA_10706 ID=mRNA_10706|Name=jgi.p|Nanoce1779_2|662712|organism=Nannochloropsis oceanica|type=mRNA|length=1603bp
CTCTGCTGGAACATATCCTTTCCTCCTTCTCTTTTTCCCCCCTCCCTTCC
CTCCCTCTTCTCCGTCCCTGGACTCACCCTTCCCCTTTACTCCCAATCGC
TTTTCTCACAACAAACAGTAGTGAAGGCAGGTGTACCGGTGCCTCATGCG
TAATCCTGATGCCTTTGCTGTAGCACTAAACTAGGCACACCATCACGCAC
CGTATGGCCGCCGCCCTCTTCCTCCCCACCCTCCATCCTTCCCTCCCTCC
GGCCCTCCACCTCCGCCTATTCGACGCTGTCCGCGAAGGGGCCCTAGACC
GGTTCGTCCGCCTTTTCTACCAAGCCGAGGCCACGCTGCTCTCCTCCTCC
ACGCTGCTCTCCTCCTCCTCCTCCTCTTCCCTCCCTCCCAACCTCCTGCT
AGAACGGCCCTCCCCTCAGCACAACGGCCGGACCCTCCTCGTGCATGCTT
GCTATTACAACAAGGGAGAGATAGCCAAGTATCTGGTCGATAGAAAAGGT
GCCCGGGTGGAGGCAACGACGAGGACCGGCAAAACCTCCCTTCACTACGC
CGCCATCAACGGCAGCGTCTCCCTAGCTTCCTTCCTCCTCTCCCGCGGCG
CGTCCCTCCTGGCCACCGACGACGAAGGATACACGCCGCTCATCTGCGCC
TGCTACTTCAAACGTGAACGCCTCATCGCACTCTTCCTCTCCTCCATCCC
GCCCTCTCTTCCACCCTCTTGCCACGTCGACCTCCCCCTTGTGGCCGATG
TGCTGCACGTGGGAAAGACAGCGCTCCATATAGCATGTCTCAGGCAATTT
CCTCAGGGGGTGCAGCTGCTGCTTACCCAAGGTAAGCTCTTACTTCCCTC
CTTCCTTCCCTCCCACCCTCCTTTCCTTCCTTCCTTCCTTCCTTCCTTCC
AGTCTGCCTTCGTAGAGAGTGTCATTCTCATGCTCCCCTTCCGACATGCC
TCCCTTCCTCCATCCCTCCTTTTGTCTTGGCCGTCACCATGGTGCAAGAG
GAGGGTGTCATCCTCACCTCCCCTTCCCTCCCTCCTTCCCTCCCCTCCTC
CCTGCCTCCTTCAGGCTGCGCCGACCCCACACTGCAAGACGAGAGAGGGA
GAACTCCTCTTGATGTGCTCAAGTGGCTGCGATGGAAGGATGTTGCTGCT
GCTGCCTTTGCCCAAAAATGTCTGGAGGAGGCCATGCGCGAGGGAGAGAG
GGCATGGATGATGAGGGCGGGAAGGAAGGCAAGGGAGGAGGGAAAGAGGG
AGGGAGGGGTAGGAGGACTGAGTTGTGGGGAGGAGGAAGAGAAGTTGGAA
GGGGGGAAGGGGGATGACGTAGCTGGAAAGGGGAGGGAGGAGCGACAGGA
AGGGAGGAAGGGAGGGAGGGCGGGGAGGACAGATAACCAGCACCTTATGA
CTGACGTAGAGGATGAAAACGAGGACGAGGACGAGGAAAGTGGGATGAAG
CGGATGACAGCGGTATTGACCTTTGTGATGGACAGTGATGAGCGTCGGAA
GGGACTGTGTAAGGATTTATTCCAAGAGCTGATGGATTTCGTGCAAGTCC
GGTGGGCGGGGAGGGTGATGGAGGGAAGGAAGGGAGGGAGGAGAGGGAGG
TAG

protein sequence of jgi.p|Nanoce1779_2|662712

>mRNA_10706-protein ID=mRNA_10706-protein|Name=jgi.p|Nanoce1779_2|662712|organism=Nannochloropsis oceanica|type=polypeptide|length=336bp
MAAALFLPTLHPSLPPALHLRLFDAVREGALDRFVRLFYQAEATLLSSST
LLSSSSSSSLPPNLLLERPSPQHNGRTLLVHACYYNKGEIAKYLVDRKGA
RVEATTRTGKTSLHYAAINGSVSLASFLLSRGASLLATDDEGYTPLICAC
YFKRERLIALFLSSIPPSLPPSCHVDLPLVADVLHVGKTALHIACLRQFP
QGVQLLLTQGKLLLPSFLPSHPPFLPSFLPSFQSAFVESVILMLPFRHAS
LPPSLLLSWPSPWCKRRVSSSPPLPSLLPSPPPCLLQAAPTPHCKTREGE
LLLMCSSGCDGRMLLLLPLPKNVWRRPCARERGHG*

mRNA from alignment at scaffold_58:22238..23968+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10706 ID=mRNA_10706|Name=jgi.p|Nanoce1779_2|662712|organism=Nannochloropsis oceanica|type=mRNA|length=1731bp|location=Sequence derived from alignment at scaffold_58:22238..23968+ (Nannochloropsis oceanica)
CTCTGCTGGAACATATCCTTTCCTCCTTCTCTTTTTCCCCCCTCCCTTCC
CTCCCTCTTCTCCGTCCCTGGACTCACCCTTCCCCTTTACTCCCAATCGC
TTTTCTCACAACAAACAGTAGTGAAGGCAGGTGTACCGGTGCCTCATGCG
TAATCCTGATGCCTTTGCTGTAGCACTAAACTAGGCACACCATCACGCAC
CGTATGGCCGCCGCCCTCTTCCTCCCCACCCTCCATCCTTCCCTCCCTCC
GGCCCTCCACCTCCGCCTATTCGACGCTGTCCGCGAAGGGGCCCTAGACC
GGTTCGTCCGCCTTTTCTACCAAGCCGAGGCCACGCTGCTCTCCTCCTCC
ACGCTGCTCTCCTCCTCCTCCTCCTCTTCCCTCCCTCCCAACCTCCTGCT
AGAACGGCCCTCCCCTCAGCACAACGGCCGGACCCTCCTCGTGCATGCTT
GCTATTACAACAAGGGAGAGATAGCCAAGTATCTGGTCGATAGAAAAGGT
GCCCGGGTGGAGGCAACGACGAGGACCGGTACATAGGAAGGGGAAGAGGG
AGGGAGGGAGGGAGAGAGGGAGGGAAGGAGGACTATTATTCATCACACAG
GGTGATTCTCACCCCTCCCTCATTCCCTGCTTTCCTTCCTTCCTCCTTCC
CCTCAGGCAAAACCTCCCTTCACTACGCCGCCATCAACGGCAGCGTCTCC
CTAGCTTCCTTCCTCCTCTCCCGCGGCGCGTCCCTCCTGGCCACCGACGA
CGAAGGATACACGCCGCTCATCTGCGCCTGCTACTTCAAACGTGAACGCC
TCATCGCACTCTTCCTCTCCTCCATCCCGCCCTCTCTTCCACCCTCTTGC
CACGTCGACCTCCCCCTTGTGGCCGATGTGCTGCACGTGGGAAAGACAGC
GCTCCATATAGCATGTCTCAGGCAATTTCCTCAGGGGGTGCAGCTGCTGC
TTACCCAAGGTAAGCTCTTACTTCCCTCCTTCCTTCCCTCCCACCCTCCT
TTCCTTCCTTCCTTCCTTCCTTCCTTCCAGTCTGCCTTCGTAGAGAGTGT
CATTCTCATGCTCCCCTTCCGACATGCCTCCCTTCCTCCATCCCTCCTTT
TGTCTTGGCCGTCACCATGGTGCAAGAGGAGGGTGTCATCCTCACCTCCC
CTTCCCTCCCTCCTTCCCTCCCCTCCTCCCTGCCTCCTTCAGGCTGCGCC
GACCCCACACTGCAAGACGAGAGAGGGAGAACTCCTCTTGATGTGCTCAA
GTGGCTGCGATGGAAGGATGTTGCTGCTGCTGCCTTTGCCCAAAAATGTC
TGGAGGAGGCCATGCGCGAGGGAGAGAGGGCATGGATGATGAGGGCGGGA
AGGAAGGCAAGGGAGGAGGGAAAGAGGGAGGGAGGGGTAGGAGGACTGAG
TTGTGGGGAGGAGGAAGAGAAGTTGGAAGGGGGGAAGGGGGATGACGTAG
CTGGAAAGGGGAGGGAGGAGCGACAGGAAGGGAGGAAGGGAGGGAGGGCG
GGGAGGACAGATAACCAGCACCTTATGACTGACGTAGAGGATGAAAACGA
GGACGAGGACGAGGAAAGTGGGATGAAGCGGATGACAGCGGTATTGACCT
TTGTGATGGACAGTGATGAGCGTCGGAAGGGACTGTGTAAGGATTTATTC
CAAGAGCTGATGGATTTCGTGCAAGTCCGGTGGGCGGGGAGGGTGATGGA
GGGAAGGAAGGGAGGGAGGAGAGGGAGGTAG

Coding sequence (CDS) from alignment at scaffold_58:22238..23968+

>mRNA_10706 ID=mRNA_10706|Name=jgi.p|Nanoce1779_2|662712|organism=Nannochloropsis oceanica|type=CDS|length=2016bp|location=Sequence derived from alignment at scaffold_58:22238..23968+ (Nannochloropsis oceanica)
ATGGCCGCCGCCCTCTTCCTCCCCACCCTCCATCCTTCCCTCCCTCCGGC
CCTCCACCTCCGCCTATTCGACGCTGTCCGCGAAGGGGCCCTAGACCGGT
TCGTCCGCCTTTTCTACCAAGCCGAGGCCACGCTGCTCTCCTCCTCCACG
CTGCTCTCCTCCTCCTCCTCCTCTTCCCTCCCTCCCAACCTCCTGCTAGA
ACGGCCCTCCCCTCAGCACAACGGCCGGACCCTCCTCGTGCATGCTTGCT
ATTACAACAAGGGAGAGATAGCCAAGTATCTGGTCGATAGAAAAGGTGCC
CGGGTGGAGGCAACGACGAGGACCGGCAAAACCTCCCTTCACTACGCCGC
CATCAACGGCAGCGTCTCCCTAGCTTCCTTCCTCCTCTCCCGCGGCGCGT
CCCTCCTGGCCACCGACGACGAAGGATACACGCCGCTCATCTGCGCCTGC
TACTTCAAACGTGAACGCCTCATCGCACTCTTCCTCTCCTCCATCCCGCC
CTCTCTTCCACCCTCTTGCCACGTCGACCTCCCCCTTGTGGCCGATGTGC
TGCACGTGGGAAAGACAGCGCTCCATATAGCATGTCTCAGGCAATTTCCT
CAGGGGGTGCAGCTGCTGCTTACCCAAGGTAAGCTCTTACTTCCCTCCTT
CCTTCCCTCCCACCCTCCTTTCCTTCCTTCCTTCCTTCCTTCCTTCCAGT
CTGCCTTCGTAGAGAGTGTCATTCTCATGCTCCCCTTCCGACATGCCTCC
CTTCCTCCATCCCTCCTTTTGTCTTGGCCGTCACCATGGTGCAAGAGGAG
GGTGTCATCCTCACCTCCCCTTCCCTCCCTCCTTCCCTCCCCTCCTCCCT
GCCTCCTTCAGGCTGCGCCGACCCCACACTGCAAGACGAGAGAGGGAGAA
CTCCTCTTGATGTGCTCAAGTGGCTGCGATGGAAGGATGTTGCTGCTGCT
GCCTTTGCCCAAAAATGTCTGGAGGAGGCCATGCGCGAGGGAGAGAGGGC
ATGGATGAATGGCCGCCGCCCTCTTCCTCCCCACCCTCCATCCTTCCCTC
CCTCCGGCCCTCCACCTCCGCCTATTCGACGCTGTCCGCGAAGGGGCCCT
AGACCGGTTCGTCCGCCTTTTCTACCAAGCCGAGGCCACGCTGCTCTCCT
CCTCCACGCTGCTCTCCTCCTCCTCCTCCTCTTCCCTCCCTCCCAACCTC
CTGCTAGAACGGCCCTCCCCTCAGCACAACGGCCGGACCCTCCTCGTGCA
TGCTTGCTATTACAACAAGGGAGAGATAGCCAAGTATCTGGTCGATAGAA
AAGGTGCCCGGGTGGAGGCAACGACGAGGACCGGCAAAACCTCCCTTCAC
TACGCCGCCATCAACGGCAGCGTCTCCCTAGCTTCCTTCCTCCTCTCCCG
CGGCGCGTCCCTCCTGGCCACCGACGACGAAGGATACACGCCGCTCATCT
GCGCCTGCTACTTCAAACGTGAACGCCTCATCGCACTCTTCCTCTCCTCC
ATCCCGCCCTCTCTTCCACCCTCTTGCCACGTCGACCTCCCCCTTGTGGC
CGATGTGCTGCACGTGGGAAAGACAGCGCTCCATATAGCATGTCTCAGGC
AATTTCCTCAGGGGGTGCAGCTGCTGCTTACCCAAGGTAAGCTCTTACTT
CCCTCCTTCCTTCCCTCCCACCCTCCTTTCCTTCCTTCCTTCCTTCCTTC
CTTCCAGTCTGCCTTCGTAGAGAGTGTCATTCTCATGCTCCCCTTCCGAC
ATGCCTCCCTTCCTCCATCCCTCCTTTTGTCTTGGCCGTCACCATGGTGC
AAGAGGAGGGTGTCATCCTCACCTCCCCTTCCCTCCCTCCTTCCCTCCCC
TCCTCCCTGCCTCCTTCAGGCTGCGCCGACCCCACACTGCAAGACGAGAG
AGGGAGAACTCCTCTTGATGTGCTCAAGTGGCTGCGATGGAAGGATGTTG
CTGCTGCTGCCTTTGCCCAAAAATGTCTGGAGGAGGCCATGCGCGAGGGA
GAGAGGGCATGGATGA

Synonyms

Publications