jgi.p|Nanoce1779_2|611672, mRNA_10704 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611672
Unique NamemRNA_10704
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1686
Alignment locationscaffold_58:19482..21372 +

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Properties
Property NameValue
TranscriptId611758
TrackFilteredModels2
ProteinId611672
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:19482..21372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611672gene_10704Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611672mRNA_10704-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10704CDS_10704Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10704 ID=mRNA_10704|Name=jgi.p|Nanoce1779_2|611672|organism=Nannochloropsis oceanica|type=mRNA|length=1686bp
TGCGTGACTTGGAACGGATCTGGGCAGAAGACCCCCATATCTACTGCCGG
GCCAGTAAGGAGGAAGGGAAGGAGGGAGGGAAGGAACGGGTGATGATGCG
TTTGTTGTGGCTGCACGCCAACTCACCAAAAGAACGGACGGTTATAACGT
GGGTGCATCGCCGGTAGAGGATGCTGGATTCATAAAGAACCAACACTGAA
AGTACTCTCTATTTTATCTTTCGTTCATCACGACGCTTTCCATGGTGAAG
CTTCAAGTATATTGGTAATATTCAACTATTTGGTAGGATACTGACGGGTG
CGAGACTGATCATCATTATCTCTGGTAGAAGAGTCCATGATTGATAAATT
GTCTCATTTCACTCAACTCAACAAATTCCTCTTGCGAGTGCACCCTCCGG
AAGGGCTTTGTATGACGCGTGAGGAGCAGCAGACGGACATGCACCGTGCA
GAGCACCGCGGATCCATACACCCTGCACTTAGGTCTCTTACACATATTGC
AGCTTTGCTCGCCCTCGAGAATTGTCGTGCTTAGCCTGTAAATCTGCTCG
TCATCCTCTTTAGACAGAAAAATGGGCCCAACTTGGAGGAAATAACGTCA
ACTAGCTAACGGCCTCGCCAAATCTCGCTAATACCCTTATGGGACGCAAC
AAAAGGCGATGAGAGGGCACGCCAGCACACGCACCACACAGGGACATTTA
TTGACAACAATAAGAATGTAAAAGAAGCAAGGGCACGTGTGTAGGGATTG
CGTCGATGGTTGTTGGCTTTCCTTTCTCCTTTCAGCAGCGTCATCATCTC
TCCACTCTTATTTGCACACATACCACAAAAACCACAGCGCACAATGTGCA
CCTTCCTATCCCACCTCGTGCCCTTCCTCCTGCTCCAGAGCTTGAATGGT
CACCCCACTCTGCGGGGCGCGGACAAGTCTCTCACATTTAAGATTGACAA
CGACACCGAGACAGATCTGCGAGTCCATCGTCCCTCTGCCTCAAACATAC
CGCCACTGTCGTCTCTTCTTGCCAAAGCAGCTGCTGTATCAGAGACACCC
GCGGGAGCCGCTGCTGCAGCAGCTGCCGAGTCACAAATCGCAGAAGGGGA
GCACTGCAAGGTGCAATTTAAGTGGGTCGTCTCGCGGAATCAGCGGCCCT
CGTCGGACGGAGCTCTGGGCGTCATCATGATACTGGACCACGCCGGCAGA
GAAAGCGACGAATCCACGACTCCTGCCTTCCGGGAGTGGGTGGCCGGCGA
GACTTATGAGGACGAGCTTGAATTTGCGCATTGCCCGAATACCCGGATCC
AAGGTTTTCGAGTCGTCTTTTATCCGTACCAGGTGCCTGGCTCCGGTCCG
CCGGAGGAGGACGATCCGTCCTCCCTCTCATTCTCACACGTGGAGGCTCT
TGAGACGATTCCTATTCTACACGAGACATGGGCGTGGGCGGAGGAAGGGG
GAAGGGGAGGGAAACAGGGTCCGTTTGTTGTGTCAATGGACGACTATACC
GTGGCCTGGATTTTGAAGGAATGAAGGTGAGAGAGGGGAAGGGAAAAAGG
GGAAGAAGGATTGGATAGAGGCGGAGCATGTTTTATTAGGGTGATACAGG
GCAAGAAAGCAAGAAGACAAATAAACGCAATTAAGAGACCCCAAAAATGA
GGGGGATAGCAGGGAAAAGATAATGCTCCTTTCCCT
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protein sequence of jgi.p|Nanoce1779_2|611672

>mRNA_10704-protein ID=mRNA_10704-protein|Name=jgi.p|Nanoce1779_2|611672|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MCTFLSHLVPFLLLQSLNGHPTLRGADKSLTFKIDNDTETDLRVHRPSAS
NIPPLSSLLAKAAAVSETPAGAAAAAAAESQIAEGEHCKVQFKWVVSRNQ
RPSSDGALGVIMILDHAGRESDESTTPAFREWVAGETYEDELEFAHCPNT
RIQGFRVVFYPYQVPGSGPPEEDDPSSLSFSHVEALETIPILHETWAWAE
EGGRGGKQGPFVVSMDDYTVAWILKE*
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mRNA from alignment at scaffold_58:19482..21372+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10704 ID=mRNA_10704|Name=jgi.p|Nanoce1779_2|611672|organism=Nannochloropsis oceanica|type=mRNA|length=1891bp|location=Sequence derived from alignment at scaffold_58:19482..21372+ (Nannochloropsis oceanica)
TGCGTGACTTGGAACGGATCTGGGCAGAAGACCCCCATATCTACTGCCGG
GCCAGTAAGGAGGAAGGGAAGGAGGGAGGGAAGGAACGGGTGATGATGCG
TTTGTTGTGGCTGCACGCCAACTCACCAAAAGAACGGACGGTTATAACGT
GGGTGCATCGCCGGTAGAGGATGCTGGATTCATAAAGAACCAACACTGAA
AGTACTCTCTATTTTATCTTTCGTTCATCACGACGCTTTCCATGGTGAAG
CTTCAAGTATATTGGTAATATTCAACTATTTGGTAGGATACTGACGGGTG
CGAGACTGATCATCATTATCTCTGGTAGAAGAGTCCATGATTGATAAATT
GTCTCATTTCACTCAACTCAACAAATTCCTCTTGCGAGTGCACCCTCCGG
AAGGGCTTTGTATGACGCGTGAGGAGCAGCAGACGGACATGCACCGTGCA
GAGCACCGCGGATCCATACACCCTGCACTTAGGTCTCTTACACATATTGC
AGCTTTGCTCGCCCTCGAGAATTGTCGTGCTTAGCCTGTAAATCTGCTCG
TCATCCTCTTTAGACAGAAAAATGGGCCCAACTTGGAGGAAATAACGTCA
ACTAGCTAACGGCCTCGCCAAATCTCGCTAATACCCTTATGGGACGCAAC
AAAAGGCGATGAGAGGGCACGCCAGCACACGCACCACACAGGGACATTTA
TTGACAACAATAAGAATGTAAAAGAAGCAAGGGCACGTGTGTAGGGATTG
CGTCGATGGTTGTTGGCTTTCCTTTCTCCTTTCAGCAGCGTCATCATCTC
TCCACTCTTATTTGCACACATACCACAAAAACCACAGCGCACAATGTGCA
CCTTCCTATCCCACCTCGTGCCCTTCCTCCTGCTCCAGAGCTTGAATGGT
CACCCCACTCTGCGGGGCGCGGACAAGTCTCTCACATTTAAGATTGACAA
CGACACCGAGACAGATCTGCGAGTCCATCGTCCCTCTGCCTCAAACATAC
CGCCACTGTCGTCTCTTCTTGCCAAAGCAGCTGCTGTATCAGAGACACCC
GCGGGAGCCGCTGCTGCAGCAGCTGCCGAGTCACAAATCGCAGAAGGGGA
GCACTGCAAGGTGCAATTTAAGTGGGTCGTCTCGCGGAATCAGCGGCCCT
CGTCGGTAAGAAAGGAAGGAGGAATGGAGGGAGGGTAGGAGGGAGCTTGA
AAGAGCTGCACATGGTCACCCCTTCTATTTTATCTCTACAGGACGGAGCT
CTGGGCGTCATCATGATACTGGACCACGCCGGCAGAGAAAGCGACGAATC
CACGACTCCTGCCTTCCGGGAGTGGGTGGCCGGCGAGACTTATGAGGACG
AGCTTGAATTTGCGCATTGCCCGAATACCCGGATCCAAGGTTTTCGAGTC
GTCTTTTATCCGTACCAGGTAGGCAGCAGGTACCCTCTTCCTCTTTTTCT
ACTCCCTCGATATTTTCCTCCCTTCTCGTTCTCTTCCCTGGACGCCTTAC
CCCCCTGCACGCCTCCCTCCCTCCCTCCCTCGCCCAGGTGCCTGGCTCCG
GTCCGCCGGAGGAGGACGATCCGTCCTCCCTCTCATTCTCACACGTGGAG
GCTCTTGAGACGATTCCTATTCTACACGAGACATGGGCGTGGGCGGAGGA
AGGGGGAAGGGGAGGGAAACAGGGTCCGTTTGTTGTGTCAATGGACGACT
ATACCGTGGCCTGGATTTTGAAGGAATGAAGGTGAGAGAGGGGAAGGGAA
AAAGGGGAAGAAGGATTGGATAGAGGCGGAGCATGTTTTATTAGGGTGAT
ACAGGGCAAGAAAGCAAGAAGACAAATAAACGCAATTAAGAGACCCCAAA
AATGAGGGGGATAGCAGGGAAAAGATAATGCTCCTTTCCCT
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Coding sequence (CDS) from alignment at scaffold_58:19482..21372+

>mRNA_10704 ID=mRNA_10704|Name=jgi.p|Nanoce1779_2|611672|organism=Nannochloropsis oceanica|type=CDS|length=2043bp|location=Sequence derived from alignment at scaffold_58:19482..21372+ (Nannochloropsis oceanica)
ATGTGCACCTTCCTATCCCACCTCGTGCCCTTCCTCCTGCTCCAGAGCTT
GAATGGTCACCCCACTCTGCGGGGCGCGGACAAGTCTCTCACATTTAAGA
TTGACAACGACACCGAGACAGATCTGCGAGTCCATCGTCCCTCTGCCTCA
AACATACCGCCACTGTCGTCTCTTCTTGCCAAAGCAGCTGCTGTATCAGA
GACACCCGCGGGAGCCGCTGCTGCAGCAGCTGCCGAGTCACAAATCGCAG
AAGGGGAGCACTGCAAGGTGCAATTTAAGTGGGTCGTCTCGCGGAATCAG
CGGCCCTCGTCGGACGGAGCTCTGGGCGTCATCATGATACTGGACCACGC
CGGCAGAGAAAGCGACGAATCCACGACTCCTGCCTTCCGGGAGTGGGTGG
CCGGCGAGACTTATGAGGACGAGCTTGAATTTGCGCATTGCCCGAATACC
CGGATCCAAGGTTTTCGAGTCGTCTTTTATCCGTACCAGGTGCCTGGCTC
CGGTCCGCCGGAGGAGGACGATCCGTCCTCCCTCTCATTCTCACACGTGG
AGGCTCTTGAGACGATTCCTATTCTACACGAGACATGGGCGTGGGCGGAG
GAAGGGGGAAGGGGAGGGAAACAGGGTCCGTTTGTTGTGTCAATGGACGA
CTATACCGTGGCCTGGATTTTGAAGGAATGAATGTGCACCTTCCTATCCC
ACCTCGTGCCCTTCCTCCTGCTCCAGAGCTTGAATGGTCACCCCACTCTG
CGGGGCGCGGACAAGTCTCTCACATTTAAGATTGACAACGACACCGAGAC
AGATCTGCGAGTCCATCGTCCCTCTGCCTCAAACATACCGCCACTGTCGT
CTCTTCTTGCCAAAGCAGCTGCTGTATCAGAGACACCCGCGGGAGCCGCT
GCTGCAGCAGCTGCCGAGTCACAAATCGCAGAAGGGGAGCACTGCAAGGT
GCAATTTAAGTGGGTCGTCTCGCGGAATCAGCGGCCCTCGTCGGACGGAG
CTCTGGGCGTCATCATGATACTGGACCACGCCGGCAGAGAAAGCGACGAA
TCCACGACTCCTGCCTTCCGGGAGTGGGTGGCCGGCGAGACTTATGAGGA
CGAGCTTGAATTTGCGCATTGCCCGAATACCCGGATCCAAGGTTTTCGAG
TCGTCTTTTATCCGTACCAGGTGCCTGGCTCCGGTCCGCCGGAGGAGGAC
GATCCGTCCTCCCTCTCATTCTCACACGTGGAGGCTCTTGAGACGATTCC
TATTCTACACGAGACATGGGCGTGGGCGGAGGAAGGGGGAAGGGGAGGGA
AACAGGGTCCGTTTGTTGTGTCAATGGACGACTATACCGTGGCCTGGATT
TTGAAGGAATGAATGTGCACCTTCCTATCCCACCTCGTGCCCTTCCTCCT
GCTCCAGAGCTTGAATGGTCACCCCACTCTGCGGGGCGCGGACAAGTCTC
TCACATTTAAGATTGACAACGACACCGAGACAGATCTGCGAGTCCATCGT
CCCTCTGCCTCAAACATACCGCCACTGTCGTCTCTTCTTGCCAAAGCAGC
TGCTGTATCAGAGACACCCGCGGGAGCCGCTGCTGCAGCAGCTGCCGAGT
CACAAATCGCAGAAGGGGAGCACTGCAAGGTGCAATTTAAGTGGGTCGTC
TCGCGGAATCAGCGGCCCTCGTCGGACGGAGCTCTGGGCGTCATCATGAT
ACTGGACCACGCCGGCAGAGAAAGCGACGAATCCACGACTCCTGCCTTCC
GGGAGTGGGTGGCCGGCGAGACTTATGAGGACGAGCTTGAATTTGCGCAT
TGCCCGAATACCCGGATCCAAGGTTTTCGAGTCGTCTTTTATCCGTACCA
GGTGCCTGGCTCCGGTCCGCCGGAGGAGGACGATCCGTCCTCCCTCTCAT
TCTCACACGTGGAGGCTCTTGAGACGATTCCTATTCTACACGAGACATGG
GCGTGGGCGGAGGAAGGGGGAAGGGGAGGGAAACAGGGTCCGTTTGTTGT
GTCAATGGACGACTATACCGTGGCCTGGATTTTGAAGGAATGA
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Synonyms
Publications