jgi.p|Nanoce1779_2|354711, mRNA_10703 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|354711
Unique NamemRNA_10703
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length790
Alignment locationscaffold_58:17673..18678 +

Link to JBrowse

Properties
Property NameValue
TranscriptId354797
TrackFilteredModels2
ProteinId354711
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:17673..18678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|354711gene_10703Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|354711mRNA_10703-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10703CDS_10703Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10703 ID=mRNA_10703|Name=jgi.p|Nanoce1779_2|354711|organism=Nannochloropsis oceanica|type=mRNA|length=790bp
GGGGGACGGAAGGGGGAACGAAATGACTATCGTTTATCATCTCAGCCGAC
CTTTTAACCCACTCTCACACTACCCTCCTTTCCCCGTCGCCTTTGATACG
CCCCTTTCCCCGTCCCTCCCTCCAGTCATCTTTCTGCTTCTTCCGCCTCC
TCCTCCCCCTCCTCCTCTCCCTCCTTCTGCCTCAAAATCTCCGCCTTCCC
CAAAACAATGGAGCTTCAAATCGGTGAGGTGTTTCTCACAGCCTCAGCTT
CCTCTGGCTGTCGGCTCGAGGAAGGCGACCTTTCTCCTTCTGCATCCCAA
GCCACGCATATACTCCACGTTGTGCATTCGCCCGATTGGAGTCCCTTGTT
CTACTTCGGCCTGACCCAGAGCCACCCCTCGGCGATCTCCTCGTCCTCCC
TCCCTCCCTCCCGCCCGCCCTCCTTCCCTTCCTTCGCACCCCCCACATTC
GACAAGCTGCACTCCTCCTCCCTTCCTCCCGTCTCTCGCGCGTATTACAA
AATGAAGGAGGTTTGGGAGGAGTACCTGGATGAGGAAGGGAGGGAGGGCG
TGCGGTGGAAGGCCGAGAGGAAGGGTTTGGATGTGGGGGCATCGCCTGGG
GGATGGACGCAGTACTTGAGGTGAGGGAAGGAAGGAGGGAGGGACGGAGG
GAAAGCAAGAAGCGGGAAGATGACGTTAAAAAAAGTGGTTGGGCTGTAGT
AACTCAACTGCCTTGTCCCTCCCTCTCTCCCTCCCTTCCTACCTCACTCC
CTCCCTCCTTCCCTCCCCTTCAATAGCGACAAGCTATTTC
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protein sequence of jgi.p|Nanoce1779_2|354711

>mRNA_10703-protein ID=mRNA_10703-protein|Name=jgi.p|Nanoce1779_2|354711|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MELQIGEVFLTASASSGCRLEEGDLSPSASQATHILHVVHSPDWSPLFYF
GLTQSHPSAISSSSLPPSRPPSFPSFAPPTFDKLHSSSLPPVSRAYYKMK
EVWEEYLDEEGREGVRWKAERKGLDVGASPGGWTQYLR*
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mRNA from alignment at scaffold_58:17673..18678+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10703 ID=mRNA_10703|Name=jgi.p|Nanoce1779_2|354711|organism=Nannochloropsis oceanica|type=mRNA|length=1006bp|location=Sequence derived from alignment at scaffold_58:17673..18678+ (Nannochloropsis oceanica)
GGGGGACGGAAGGGGGAACGAAATGACTATCGTTTATCATCTCAGCCGAC
CTTTTAACCCACTCTCACACTACCCTCCTTTCCCCGTCGCCTTTGATACG
CCCCTTTCCCCGTCCCTCCCTCCAGTCATCTTTCTGCTTCTTCCGCCTCC
TCCTCCCCCTCCTCCTCTCCCTCCTTCTGCCTCAAAATCTCCGCCTTCCC
CAAAACAATGGAGCTTCAAATCGGTGAGGTGTTTCTCACAGCCTCAGCTT
CCTCTGGCTGTCGGCTCGAGGAAGGCGACCTTTCTCCTTCTGCATCCCAA
GCCACGCATATACTCCACGTTGTGCATTCGCCCGGTGAGGAGGAAGGAAG
GAAGGGAGGGAGGGGGCAGGGGTGGCTCAGCAACGAGTCGTATCGTCACA
TTTTCTGAATCACTCTTCTAATTGCGCTTTCTTCCCTTATATCCCTCCTG
GCCCCTGACCAATACACACAGATTGGAGTCCCTTGTTCTACTTCGGCCTG
ACCCAGAGCCACCCCTCGGCGATCTCCTCGTCCTCCCTCCCTCCCTCCCG
CCCGCCCTCCTTCCCTTCCTTCGCACCCCCCACATTCGACAAGCTGCACT
CCTCCTCCCTTCCTCCCGTCTCTCGCGCGTATTACAAAATGAAGGAGGTT
TGGGAGGAGTACCTGGATGAGGAAGGGAGGGAGGGCGTGCGGTGGAAGGC
CGAGAGGAAGGGTTTGGATGTGGGGGCATCGCCTGGGGGATGGACGCAGT
ACTTGAGGTGAGGGAAGGAAGGAGGGAGGGAGGGAGGGAGTGTGATAGAG
TGTCGTTGCTACCACAGAGAGGGAGAGACGGAGGGAGGGAGGGACGGAGG
GAGGGAGGGACGGAGGGAAAGCAAGAAGCGGGAAGATGACGTTAAAAAAA
GTGGTTGGGCTGTAGTAACTCAACTGCCTTGTCCCTCCCTCTCTCCCTCC
CTTCCTACCTCACTCCCTCCCTCCTTCCCTCCCCTTCAATAGCGACAAGC
TATTTC
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Coding sequence (CDS) from alignment at scaffold_58:17673..18678+

>mRNA_10703 ID=mRNA_10703|Name=jgi.p|Nanoce1779_2|354711|organism=Nannochloropsis oceanica|type=CDS|length=834bp|location=Sequence derived from alignment at scaffold_58:17673..18678+ (Nannochloropsis oceanica)
ATGGAGCTTCAAATCGGTGAGGTGTTTCTCACAGCCTCAGCTTCCTCTGG
CTGTCGGCTCGAGGAAGGCGACCTTTCTCCTTCTGCATCCCAAGCCACGC
ATATACTCCACGTTGTGCATTCGCCCGATTGGAGTCCCTTGTTCTACTTC
GGCCTGACCCAGAGCCACCCCTCGGCGATCTCCTCGTCCTCCCTCCCTCC
CTCCCGCCCGCCCTCCTTCCCTTCCTTCGCACCCCCCACATTCGACAAGC
TGCACTCCTCCTCCCTTCCTCCCGTCTCTCGCGCGTATTACAAAATGAAG
GAGGTTTGGGAGGAGTACCTGGATGAGGAAGGGAGGGAGGGCGTGCGGTG
GAAGGCCGAGAGGAAGGGTTTGGATGTGGGGGCATCGCCTGGGGGATGGA
CGCAGTACTTGAGGTGAATGGAGCTTCAAATCGGTGAGGTGTTTCTCACA
GCCTCAGCTTCCTCTGGCTGTCGGCTCGAGGAAGGCGACCTTTCTCCTTC
TGCATCCCAAGCCACGCATATACTCCACGTTGTGCATTCGCCCGATTGGA
GTCCCTTGTTCTACTTCGGCCTGACCCAGAGCCACCCCTCGGCGATCTCC
TCGTCCTCCCTCCCTCCCTCCCGCCCGCCCTCCTTCCCTTCCTTCGCACC
CCCCACATTCGACAAGCTGCACTCCTCCTCCCTTCCTCCCGTCTCTCGCG
CGTATTACAAAATGAAGGAGGTTTGGGAGGAGTACCTGGATGAGGAAGGG
AGGGAGGGCGTGCGGTGGAAGGCCGAGAGGAAGGGTTTGGATGTGGGGGC
ATCGCCTGGGGGATGGACGCAGTACTTGAGGTGA
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Synonyms
Publications