jgi.p|Nanoce1779_2|643355, mRNA_10702 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|643355
Unique NamemRNA_10702
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length537
Alignment locationscaffold_58:17075..17611 +

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Properties
Property NameValue
TranscriptId643441
TrackFilteredModels2
ProteinId643355
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:17075..17611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|643355gene_10702Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|643355mRNA_10702-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10702CDS_10702Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10702 ID=mRNA_10702|Name=jgi.p|Nanoce1779_2|643355|organism=Nannochloropsis oceanica|type=mRNA|length=537bp
ATGTTCAAACCGCAACCCCAGCACCATCTCAAGCATGCTAACGACGACGA
CGATTGTGATGCCTTTGCTACTTTCAGCACACGTCCTATCACCTTGGCCC
CGATCTTTCCCTTAATTTGGGCGATTGAGGTGGAACCAACGCAGCTATGT
CGCATCTCCTCCTACCTGCCGTCTGCTCCTTTCCCCTCCTCCTCCTCCTC
CTCCTCCTCCTTCTCCTCCTCCTCCTCCCCCTCCTCCTCCTCCCACTCAT
CTACCACCAAAATCACGGATAGCAGCAATCATGCCCCCTCCTCCTCACCT
TTGCCACTACCAAGCACTCTTCCTCTGGCTGGATGCATTGCCAACCGCGC
GAAAGCCCACTCCAGCTGCCTGTTGGGGGCCACCTACCGCATGGATGATC
AAAGCCACCTCATCCCTCCCTCGCACCAACGACACATCAGTCGGGTGTTT
TACGTACCGAATGCCTGTGGAGATATTGGCTGGTTGGCCTTCAGTCCCGA
GCTACGGGAGGCGCTTAAGAAGGCGAAGACGAGGTAG
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protein sequence of jgi.p|Nanoce1779_2|643355

>mRNA_10702-protein ID=mRNA_10702-protein|Name=jgi.p|Nanoce1779_2|643355|organism=Nannochloropsis oceanica|type=polypeptide|length=179bp
MFKPQPQHHLKHANDDDDCDAFATFSTRPITLAPIFPLIWAIEVEPTQLC
RISSYLPSAPFPSSSSSSSSFSSSSSPSSSSHSSTTKITDSSNHAPSSSP
LPLPSTLPLAGCIANRAKAHSSCLLGATYRMDDQSHLIPPSHQRHISRVF
YVPNACGDIGWLAFSPELREALKKAKTR*
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mRNA from alignment at scaffold_58:17075..17611+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10702 ID=mRNA_10702|Name=jgi.p|Nanoce1779_2|643355|organism=Nannochloropsis oceanica|type=mRNA|length=537bp|location=Sequence derived from alignment at scaffold_58:17075..17611+ (Nannochloropsis oceanica)
ATGTTCAAACCGCAACCCCAGCACCATCTCAAGCATGCTAACGACGACGA
CGATTGTGATGCCTTTGCTACTTTCAGCACACGTCCTATCACCTTGGCCC
CGATCTTTCCCTTAATTTGGGCGATTGAGGTGGAACCAACGCAGCTATGT
CGCATCTCCTCCTACCTGCCGTCTGCTCCTTTCCCCTCCTCCTCCTCCTC
CTCCTCCTCCTTCTCCTCCTCCTCCTCCCCCTCCTCCTCCTCCCACTCAT
CTACCACCAAAATCACGGATAGCAGCAATCATGCCCCCTCCTCCTCACCT
TTGCCACTACCAAGCACTCTTCCTCTGGCTGGATGCATTGCCAACCGCGC
GAAAGCCCACTCCAGCTGCCTGTTGGGGGCCACCTACCGCATGGATGATC
AAAGCCACCTCATCCCTCCCTCGCACCAACGACACATCAGTCGGGTGTTT
TACGTACCGAATGCCTGTGGAGATATTGGCTGGTTGGCCTTCAGTCCCGA
GCTACGGGAGGCGCTTAAGAAGGCGAAGACGAGGTAG
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Coding sequence (CDS) from alignment at scaffold_58:17075..17611+

>mRNA_10702 ID=mRNA_10702|Name=jgi.p|Nanoce1779_2|643355|organism=Nannochloropsis oceanica|type=CDS|length=537bp|location=Sequence derived from alignment at scaffold_58:17075..17611+ (Nannochloropsis oceanica)
ATGTTCAAACCGCAACCCCAGCACCATCTCAAGCATGCTAACGACGACGA
CGATTGTGATGCCTTTGCTACTTTCAGCACACGTCCTATCACCTTGGCCC
CGATCTTTCCCTTAATTTGGGCGATTGAGGTGGAACCAACGCAGCTATGT
CGCATCTCCTCCTACCTGCCGTCTGCTCCTTTCCCCTCCTCCTCCTCCTC
CTCCTCCTCCTTCTCCTCCTCCTCCTCCCCCTCCTCCTCCTCCCACTCAT
CTACCACCAAAATCACGGATAGCAGCAATCATGCCCCCTCCTCCTCACCT
TTGCCACTACCAAGCACTCTTCCTCTGGCTGGATGCATTGCCAACCGCGC
GAAAGCCCACTCCAGCTGCCTGTTGGGGGCCACCTACCGCATGGATGATC
AAAGCCACCTCATCCCTCCCTCGCACCAACGACACATCAGTCGGGTGTTT
TACGTACCGAATGCCTGTGGAGATATTGGCTGGTTGGCCTTCAGTCCCGA
GCTACGGGAGGCGCTTAAGAAGGCGAAGACGAGGTAG
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Synonyms
Publications