jgi.p|Nanoce1779_2|627628, mRNA_107 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|627628
Unique NamemRNA_107
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1096
Alignment locationscaffold_3:286357..287452 +

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Properties
Property NameValue
TranscriptId627714
TrackFilteredModels2
ProteinId627628
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:286357..287452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627628gene_107Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627628mRNA_107-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_107CDS_107Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_107 ID=mRNA_107|Name=jgi.p|Nanoce1779_2|627628|organism=Nannochloropsis oceanica|type=mRNA|length=1096bp
GGAGGAGGAGGAGGAGGGCGGACGAGGGGTGAGGAAGAAGGACAAGGAGG
GGTAGGAAGAAGAGGAGGAAGTGTGCTGAAGGAGGAGGGAATGGGAGAGG
GTCAGAAGAAGGGAAGAAATGACGCAGTGCTGAAGCAAGTAAAACGGCAA
GAGGGAGTGGAGAAGGAGAAACAGGTCCTTCCGTCCGTGGAGATGAAGGA
GGAAGGAGGAAAGAAGAGGAGATACGGGGAAGAGGATTTGTTGGCAGTCG
CATGTAAATCGCTTAAAGCCCCCGAAAATGAGAAAAATCTGAAGAAGAAG
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGGAGGA
GGAGGAGAAGAAGGAGAAGGAGAAGGAGAAGGAGAAGAAGAAGGAGAAGC
CCAAGAAGGAGAAGAAACACAAATAGGAGAATAGCAATAAACGCAAGGGC
AGCTCTATAGCTCCTCTGTCATCACTTCCTCCTCCTCCTCCTCCGACCAA
AGTGGAGACACCGAGAAAAACATTCAAGACAAAGTACACCGAGATCAACA
GACCATACCTTACAAAGCATGCAATCGACGCATTCATAAACTATACAATG
TGAGCATGAAACTTTCCTCGCTTTAAATCCCCACATTTTGCCTACTATCG
TAGTAGAACGCGTGAATCGCGAGTGGTGAGTCACGAATGTTCGAGTGGTG
AGGTGATGTATACATAGGTGAGTCTACACACGAGAGAAATAAATTATGTG
AAACCAGTCATTCATGTCTTCATCCCTGCCGTGGTTGAAGTCACTGCATT
TCACGACCTCAGAGCTGATTCTCTTCGATCTTTGCTCCTTTTCTTTCACA
TTTCTTGTTAGGGGTGTTTGTTTCACCTTTCCCAGCAATTACAAATATTG
ACGACCTGCTTTAAAACTGCATCCATCTCGCGCGTGCACACATTCCAATC
CTTATCACACGTATTCAAAAGGTGTTTGTCGTGCCAGTTTAAGGGAAGGC
GAAAGGAGACCCAGCAGCAGCTGCAGCACGACTGGCAGGACGAGGTTTAA
GGGCCGCCGTCTCTGTACCGCTGCTGATGCCCCACCCTCAGTGCTC
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protein sequence of jgi.p|Nanoce1779_2|627628

>mRNA_107-protein ID=mRNA_107-protein|Name=jgi.p|Nanoce1779_2|627628|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MGEGQKKGRNDAVLKQVKRQEGVEKEKQVLPSVEMKEEGGKKRRYGEEDL
LAVACKSLKAPENEKNLKKKKKKKKKKKKKKKKKKEEEEKKEKEKEKEKK
KEKPKKEKKHK*
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mRNA from alignment at scaffold_3:286357..287452+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_107 ID=mRNA_107|Name=jgi.p|Nanoce1779_2|627628|organism=Nannochloropsis oceanica|type=mRNA|length=1096bp|location=Sequence derived from alignment at scaffold_3:286357..287452+ (Nannochloropsis oceanica)
GGAGGAGGAGGAGGAGGGCGGACGAGGGGTGAGGAAGAAGGACAAGGAGG
GGTAGGAAGAAGAGGAGGAAGTGTGCTGAAGGAGGAGGGAATGGGAGAGG
GTCAGAAGAAGGGAAGAAATGACGCAGTGCTGAAGCAAGTAAAACGGCAA
GAGGGAGTGGAGAAGGAGAAACAGGTCCTTCCGTCCGTGGAGATGAAGGA
GGAAGGAGGAAAGAAGAGGAGATACGGGGAAGAGGATTTGTTGGCAGTCG
CATGTAAATCGCTTAAAGCCCCCGAAAATGAGAAAAATCTGAAGAAGAAG
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGGAGGA
GGAGGAGAAGAAGGAGAAGGAGAAGGAGAAGGAGAAGAAGAAGGAGAAGC
CCAAGAAGGAGAAGAAACACAAATAGGAGAATAGCAATAAACGCAAGGGC
AGCTCTATAGCTCCTCTGTCATCACTTCCTCCTCCTCCTCCTCCGACCAA
AGTGGAGACACCGAGAAAAACATTCAAGACAAAGTACACCGAGATCAACA
GACCATACCTTACAAAGCATGCAATCGACGCATTCATAAACTATACAATG
TGAGCATGAAACTTTCCTCGCTTTAAATCCCCACATTTTGCCTACTATCG
TAGTAGAACGCGTGAATCGCGAGTGGTGAGTCACGAATGTTCGAGTGGTG
AGGTGATGTATACATAGGTGAGTCTACACACGAGAGAAATAAATTATGTG
AAACCAGTCATTCATGTCTTCATCCCTGCCGTGGTTGAAGTCACTGCATT
TCACGACCTCAGAGCTGATTCTCTTCGATCTTTGCTCCTTTTCTTTCACA
TTTCTTGTTAGGGGTGTTTGTTTCACCTTTCCCAGCAATTACAAATATTG
ACGACCTGCTTTAAAACTGCATCCATCTCGCGCGTGCACACATTCCAATC
CTTATCACACGTATTCAAAAGGTGTTTGTCGTGCCAGTTTAAGGGAAGGC
GAAAGGAGACCCAGCAGCAGCTGCAGCACGACTGGCAGGACGAGGTTTAA
GGGCCGCCGTCTCTGTACCGCTGCTGATGCCCCACCCTCAGTGCTC
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Coding sequence (CDS) from alignment at scaffold_3:286357..287452+

>mRNA_107 ID=mRNA_107|Name=jgi.p|Nanoce1779_2|627628|organism=Nannochloropsis oceanica|type=CDS|length=336bp|location=Sequence derived from alignment at scaffold_3:286357..287452+ (Nannochloropsis oceanica)
ATGGGAGAGGGTCAGAAGAAGGGAAGAAATGACGCAGTGCTGAAGCAAGT
AAAACGGCAAGAGGGAGTGGAGAAGGAGAAACAGGTCCTTCCGTCCGTGG
AGATGAAGGAGGAAGGAGGAAAGAAGAGGAGATACGGGGAAGAGGATTTG
TTGGCAGTCGCATGTAAATCGCTTAAAGCCCCCGAAAATGAGAAAAATCT
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
AAAAGGAGGAGGAGGAGAAGAAGGAGAAGGAGAAGGAGAAGGAGAAGAAG
AAGGAGAAGCCCAAGAAGGAGAAGAAACACAAATAG
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Synonyms
Publications