jgi.p|Nanoce1779_2|674838, mRNA_10699 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|674838
Unique NamemRNA_10699
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length939
Alignment locationscaffold_58:5893..7013 -

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Properties
Property NameValue
TranscriptId674924
TrackFilteredModels2
ProteinId674838
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:5893..7013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674838gene_10699Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10699CDS_10699Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674838mRNA_10699-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10699 ID=mRNA_10699|Name=jgi.p|Nanoce1779_2|674838|organism=Nannochloropsis oceanica|type=mRNA|length=939bp
CGCTGCCAGGTCAACTATGAAGAGGAATTTTTACGGGCCAAGGCGCAGTT
GATCTGCGAGAGTTGAGCAGGGCTTCTTCCTCGACAAAGAGGACCCTGTT
TGGTTCCCGCCTCGGATCTATTACATTTCCAAATTACCCCGCGCCGGCCG
TACGATCAATGGAGAAAGGGAGATAGGAAGGGATAAAGACGTGGGCGGGA
GCGACCTCGGCCTAGGGATATTTAGAGGATGGGGAGGGTAGGAATGGGTA
GTGTGGTAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGGAGTGAGGGAGTA
ATGGAGGTATATCAACATCTAAATTATCAGCAACAATCGATGAGAAAGTT
GCAGGGGGAGATAGACCGGCTCACGGCCCTCCAGGTGGAGAACAACAAGA
GGCAAGGCACGATGGACGACAAGCTCCAGGCTGCGCTCACCCTCCTTCAG
TCCGTACATCGACGGGAGGGCGGGAAGGTAGAGGACGGGAAGGAAGGAGG
AGGGATGGTGACGGCGCCCAGCGGGGCAGGGGAGAGCGGGAAGATGGGAG
GGGACGTGTTGACGCCAATGTCAGAGGCGATCTCATCTTTGTCGACAGAG
GACTCGTTTGGATTCCTCGAAAGATTACACCCAATGCGGCCACAGCCTTT
AATTTCGCCTCTTCATCCTGCGCTTCATTCTCAGAGAGTTCAGGAGCTGG
TGGAGGTGGTGGTGACGGAGGAGGAGGAGGGAGGGGCGGACGGAGAGGTT
TCCCCTGTGTGCAATACGCTCACCCCTTCATCCTCGTCATGGTCCCCGCT
GTCTGCTGCTGCTGCTACTGCTGCTGCGACTCCCAAGAGACGAGGGCTAC
CGGCGCGATCCTTGTCCTCCATTCTTTTTCGAAGCAAAAGCAAATCCTCC
CACACTGTCGTTGAGACTTTGAAGACGACGGAGGGAAGG
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protein sequence of jgi.p|Nanoce1779_2|674838

>mRNA_10699-protein ID=mRNA_10699-protein|Name=jgi.p|Nanoce1779_2|674838|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MGRVGMGSVVGGGGGGRGGGSEGVMEVYQHLNYQQQSMRKLQGEIDRLTA
LQVENNKRQGTMDDKLQAALTLLQSVHRREGGKVEDGKEGGGMVTAPSGA
GESGKMGGDVLTPMSEAISSLSTEDSFGFLERLHPMRPQPLISPLHPALH
SQRVQELVEVVVTEEEEGGADGEVSPVCNTLTPSSSSWSPLSAAAATAAA
TPKRRGLPARSLSSILFRSKSKSSHTVVETLKTTEGR
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mRNA from alignment at scaffold_58:5893..7013-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10699 ID=mRNA_10699|Name=jgi.p|Nanoce1779_2|674838|organism=Nannochloropsis oceanica|type=mRNA|length=1121bp|location=Sequence derived from alignment at scaffold_58:5893..7013- (Nannochloropsis oceanica)
CGCTGCCAGGTCAACTATGAAGAGGAATTTTTACGGGCCAAGGCGCAGTT
GATCTGCGAGAGTTGAGCAGGTTGGTAGAAAGGGATTGAACGAGCTTGGG
AGGCCGAAAAGGAGAGAGGGGTGTGAGTTCGAGTCTGCACGATGCCACTA
TTCCCTATATGTTTTTTACTACTATGCATGATTGCCAACCAACTCATCTT
CCCTTTCCTCCCTTTATCTCTCTTTGCCCCTCTCTTCCTTGCTCTTCTTC
AGGGCTTCTTCCTCGACAAAGAGGACCCTGTTTGGTTCCCGCCTCGGATC
TATTACATTTCCAAATTACCCCGCGCCGGCCGTACGATCAATGGAGAAAG
GGAGATAGGAAGGGATAAAGACGTGGGCGGGAGCGACCTCGGCCTAGGGA
TATTTAGAGGATGGGGAGGGTAGGAATGGGTAGTGTGGTAGGAGGAGGAG
GAGGAGGAAGAGGAGGAGGGAGTGAGGGAGTAATGGAGGTATATCAACAT
CTAAATTATCAGCAACAATCGATGAGAAAGTTGCAGGGGGAGATAGACCG
GCTCACGGCCCTCCAGGTGGAGAACAACAAGAGGCAAGGCACGATGGACG
ACAAGCTCCAGGCTGCGCTCACCCTCCTTCAGTCCGTACATCGACGGGAG
GGCGGGAAGGTAGAGGACGGGAAGGAAGGAGGAGGGATGGTGACGGCGCC
CAGCGGGGCAGGGGAGAGCGGGAAGATGGGAGGGGACGTGTTGACGCCAA
TGTCAGAGGCGATCTCATCTTTGTCGACAGAGGACTCGTTTGGATTCCTC
GAAAGATTACACCCAATGCGGCCACAGCCTTTAATTTCGCCTCTTCATCC
TGCGCTTCATTCTCAGAGAGTTCAGGAGCTGGTGGAGGTGGTGGTGACGG
AGGAGGAGGAGGGAGGGGCGGACGGAGAGGTTTCCCCTGTGTGCAATACG
CTCACCCCTTCATCCTCGTCATGGTCCCCGCTGTCTGCTGCTGCTGCTAC
TGCTGCTGCGACTCCCAAGAGACGAGGGCTACCGGCGCGATCCTTGTCCT
CCATTCTTTTTCGAAGCAAAAGCAAATCCTCCCACACTGTCGTTGAGACT
TTGAAGACGACGGAGGGAAGG
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Coding sequence (CDS) from alignment at scaffold_58:5893..7013-

>mRNA_10699 ID=mRNA_10699|Name=jgi.p|Nanoce1779_2|674838|organism=Nannochloropsis oceanica|type=CDS|length=711bp|location=Sequence derived from alignment at scaffold_58:5893..7013- (Nannochloropsis oceanica)
ATGGGGAGGGTAGGAATGGGTAGTGTGGTAGGAGGAGGAGGAGGAGGAAG
AGGAGGAGGGAGTGAGGGAGTAATGGAGGTATATCAACATCTAAATTATC
AGCAACAATCGATGAGAAAGTTGCAGGGGGAGATAGACCGGCTCACGGCC
CTCCAGGTGGAGAACAACAAGAGGCAAGGCACGATGGACGACAAGCTCCA
GGCTGCGCTCACCCTCCTTCAGTCCGTACATCGACGGGAGGGCGGGAAGG
TAGAGGACGGGAAGGAAGGAGGAGGGATGGTGACGGCGCCCAGCGGGGCA
GGGGAGAGCGGGAAGATGGGAGGGGACGTGTTGACGCCAATGTCAGAGGC
GATCTCATCTTTGTCGACAGAGGACTCGTTTGGATTCCTCGAAAGATTAC
ACCCAATGCGGCCACAGCCTTTAATTTCGCCTCTTCATCCTGCGCTTCAT
TCTCAGAGAGTTCAGGAGCTGGTGGAGGTGGTGGTGACGGAGGAGGAGGA
GGGAGGGGCGGACGGAGAGGTTTCCCCTGTGTGCAATACGCTCACCCCTT
CATCCTCGTCATGGTCCCCGCTGTCTGCTGCTGCTGCTACTGCTGCTGCG
ACTCCCAAGAGACGAGGGCTACCGGCGCGATCCTTGTCCTCCATTCTTTT
TCGAAGCAAAAGCAAATCCTCCCACACTGTCGTTGAGACTTTGAAGACGA
CGGAGGGAAGG
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Synonyms
Publications