jgi.p|Nanoce1779_2|354398, mRNA_10698 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|354398
Unique NamemRNA_10698
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length402
Alignment locationscaffold_58:4947..5348 +

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Properties
Property NameValue
TranscriptId354484
TrackFilteredModels2
ProteinId354398
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:4947..5348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|354398gene_10698Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|354398mRNA_10698-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10698CDS_10698Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10698 ID=mRNA_10698|Name=jgi.p|Nanoce1779_2|354398|organism=Nannochloropsis oceanica|type=mRNA|length=402bp
AGAAGAAGAAGAAGAAAAGGCGGGAAACGAAGGAAATGGCGGAGGGGGGA
TCGAGAAACATCGCGCGACGTAAATATGTGGGATTGTGGTCTTCTTCGCT
TCCGTTCTCATCAGTTTCGCACGGCGTGGCTTTTTCTACAGTGCTCGTCG
TTGTTCCCTTCCTCCCTCGCGATGACCATCATCATTCACTGCCATCCCGT
AATAAGCCAGAATGCAGCGTATCCTCTCCCAATTATTGGTGGTGATGAAT
CCTTGTTATCCCACTCTTTTCTTCGGATAAATACGCCGTGGGGAGGGGAG
GTCTGTGGTAGTAGTGGTAGTTAGTTAGTCACGGATTGGAATTCCTTGTA
AAACTGCTGCTGTCCTTGTCTGAGACAGGCGAAGAAATAGGAGAGAAAGG
AA
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protein sequence of jgi.p|Nanoce1779_2|354398

>mRNA_10698-protein ID=mRNA_10698-protein|Name=jgi.p|Nanoce1779_2|354398|organism=Nannochloropsis oceanica|type=polypeptide|length=83bp
MWDCGLLRFRSHQFRTAWLFLQCSSLFPSSLAMTIIIHCHPVISQNAAYP
LPIIGGDESLLSHSFLRINTPWGGEVCGSSGS*
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mRNA from alignment at scaffold_58:4947..5348+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10698 ID=mRNA_10698|Name=jgi.p|Nanoce1779_2|354398|organism=Nannochloropsis oceanica|type=mRNA|length=402bp|location=Sequence derived from alignment at scaffold_58:4947..5348+ (Nannochloropsis oceanica)
AGAAGAAGAAGAAGAAAAGGCGGGAAACGAAGGAAATGGCGGAGGGGGGA
TCGAGAAACATCGCGCGACGTAAATATGTGGGATTGTGGTCTTCTTCGCT
TCCGTTCTCATCAGTTTCGCACGGCGTGGCTTTTTCTACAGTGCTCGTCG
TTGTTCCCTTCCTCCCTCGCGATGACCATCATCATTCACTGCCATCCCGT
AATAAGCCAGAATGCAGCGTATCCTCTCCCAATTATTGGTGGTGATGAAT
CCTTGTTATCCCACTCTTTTCTTCGGATAAATACGCCGTGGGGAGGGGAG
GTCTGTGGTAGTAGTGGTAGTTAGTTAGTCACGGATTGGAATTCCTTGTA
AAACTGCTGCTGTCCTTGTCTGAGACAGGCGAAGAAATAGGAGAGAAAGG
AA
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Coding sequence (CDS) from alignment at scaffold_58:4947..5348+

>mRNA_10698 ID=mRNA_10698|Name=jgi.p|Nanoce1779_2|354398|organism=Nannochloropsis oceanica|type=CDS|length=249bp|location=Sequence derived from alignment at scaffold_58:4947..5348+ (Nannochloropsis oceanica)
ATGTGGGATTGTGGTCTTCTTCGCTTCCGTTCTCATCAGTTTCGCACGGC
GTGGCTTTTTCTACAGTGCTCGTCGTTGTTCCCTTCCTCCCTCGCGATGA
CCATCATCATTCACTGCCATCCCGTAATAAGCCAGAATGCAGCGTATCCT
CTCCCAATTATTGGTGGTGATGAATCCTTGTTATCCCACTCTTTTCTTCG
GATAAATACGCCGTGGGGAGGGGAGGTCTGTGGTAGTAGTGGTAGTTAG
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Synonyms
Publications